Wall clock time and date at job start Mon Mar 30 2020 01:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31788 * 119.12157 * 2 1 4 4 C 1.32338 * 120.81728 * 179.97438 * 3 2 1 5 5 C 1.38593 * 119.10271 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.79916 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47047 * 89.99887 * 6 5 4 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 5 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 C 1.38592 * 118.40208 * 0.27177 * 5 4 3 23 23 N 1.31797 * 119.12080 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47056 * 89.99601 * 1 2 3 25 25 H 1.08998 * 109.47400 * 210.00050 * 1 2 3 26 26 H 1.09006 * 109.47153 * 330.00060 * 1 2 3 27 27 H 1.08005 * 120.44838 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46971 * 330.00359 * 6 5 4 29 29 H 1.09002 * 109.47340 * 209.99736 * 6 5 4 30 30 H 0.97003 * 120.00136 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 35 35 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 36 36 H 1.08006 * 120.44910 * 179.73286 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 0.0005 5 6 4.1808 0.0000 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1762 0.0000 1.3817 8 6 7.5495 0.0005 1.6370 9 6 8.4541 0.0005 0.5772 10 6 9.8176 0.0004 0.8190 11 6 10.2945 0.0010 2.1106 12 6 9.3928 0.0009 3.1914 13 6 9.8755 0.0009 4.5206 14 1 10.8606 0.3867 4.7374 15 6 9.0766 -0.4991 5.5549 16 7 8.0573 -1.2716 5.2793 17 14 9.4655 -0.0635 7.3293 18 1 10.6601 0.8175 7.3724 19 1 8.3064 0.6436 7.9309 20 1 9.7395 -1.3058 8.0953 21 6 8.0093 0.0010 2.9411 22 6 3.4712 -1.1905 -0.0058 23 7 2.1484 -1.1514 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.9907 2.1373 0.0009 28 1 6.0512 0.8900 -0.5133 29 1 6.0512 -0.8901 -0.5133 30 1 5.5458 0.0004 2.1190 31 1 8.0894 0.0004 -0.4393 32 1 10.5102 0.0000 -0.0096 33 1 11.3588 0.0006 2.2942 34 1 7.5038 -1.6185 5.9964 35 1 7.3091 0.0059 3.7634 36 1 3.9907 -2.1374 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656262071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:28 Heat of formation + Delta-G solvation = 63.245724 kcal Electronic energy + Delta-G solvation = -18905.112442 eV Core-core repulsion = 15967.608401 eV Total energy + Delta-G solvation = -2937.504042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19568 -37.89182 -35.59709 -33.81515 -33.67163 -32.72517 -29.84965 -29.45952 -27.42348 -25.28276 -24.75920 -24.58572 -22.09726 -20.90779 -19.91682 -17.83935 -17.26092 -16.87240 -16.11454 -15.39341 -15.00611 -14.77246 -14.26266 -13.84064 -13.73339 -13.36239 -13.33927 -12.90011 -12.68776 -12.59865 -12.56776 -12.19838 -11.60452 -11.18596 -11.03198 -10.92176 -10.89133 -10.61209 -10.43019 -9.77241 -9.52900 -9.38944 -9.32034 -9.23984 -8.81497 -7.34060 -6.75427 -6.23837 -4.33212 0.70725 0.97581 2.83925 3.09508 3.14951 3.19668 3.30652 3.55084 3.81729 3.96620 4.02529 4.36948 4.53799 4.69237 4.71065 4.81858 5.12529 5.30150 5.32088 5.63612 5.67628 5.80220 5.80879 6.01303 6.23475 6.30152 6.53552 6.83976 6.84425 7.05423 7.11743 7.34010 7.39330 7.75209 7.92485 7.95934 8.06567 8.14850 8.45725 8.60817 8.80151 8.99019 9.08170 10.23453 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.004110 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.785386 B = 6810.364124 C = 7776.042627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.310 3.690 3 N -0.522 5.522 4 C 0.167 3.833 5 C -0.206 4.206 6 C 0.187 3.813 7 N -0.758 5.758 8 C 0.214 3.786 9 C -0.300 4.300 10 C -0.066 4.066 11 C -0.256 4.256 12 C 0.139 3.861 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.078 3.922 16 N -0.792 5.792 17 Si 0.903 3.097 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.229 4.229 22 C 0.168 3.832 23 N -0.521 5.521 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.170 0.830 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.390 0.610 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.277 0.723 35 H 0.116 0.884 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 1.733 -7.859 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.236 5.236 4 C 0.000 4.000 5 C -0.210 4.210 6 C 0.061 3.939 7 N -0.392 5.392 8 C 0.116 3.884 9 C -0.322 4.322 10 C -0.085 4.085 11 C -0.277 4.277 12 C 0.135 3.865 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.140 4.140 16 N -0.417 5.417 17 Si 0.728 3.272 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.253 4.253 22 C 0.002 3.998 23 N -0.235 5.235 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.187 0.813 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -12.156 1.588 -7.947 14.609 hybrid contribution 0.931 0.035 1.091 1.435 sum -11.225 1.623 -6.855 13.252 Atomic orbital electron populations 1.20552 0.85827 1.04142 1.03733 1.23302 0.98260 0.83678 0.90474 1.68300 1.10028 1.30444 1.14803 1.23242 0.89273 0.98546 0.88900 1.21854 0.99082 0.95627 1.04458 1.19766 0.85752 1.01806 0.86609 1.44399 1.04473 1.86128 1.04246 1.17616 0.81456 0.95221 0.94112 1.19863 0.92895 1.24216 0.95257 1.20286 0.93987 0.98591 0.95591 1.20879 0.97614 1.16689 0.92471 1.17327 0.90784 0.85951 0.92400 1.19595 1.01923 1.36391 0.91440 0.90496 1.25881 0.94028 0.92602 1.01458 1.69870 1.14526 1.22610 1.34733 0.86344 0.79625 0.79247 0.81973 1.18412 1.19844 1.20090 1.20714 0.96308 1.15585 0.92669 1.23262 0.89257 0.98604 0.88714 1.68311 1.10042 1.30420 1.14734 0.89727 0.89658 0.89680 0.81308 0.91864 0.91845 0.77705 0.89614 0.89566 0.89341 0.91228 0.86590 0.81257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.32 36.01 0.37 -0.37 16 2 C 0.31 3.91 7.64 -157.20 -1.20 2.71 16 3 N -0.52 -6.89 10.33 -10.72 -0.11 -7.00 16 4 C 0.17 2.07 11.01 -17.20 -0.19 1.88 16 5 C -0.21 -2.61 5.28 -104.36 -0.55 -3.16 16 6 C 0.19 2.63 5.08 -5.19 -0.03 2.60 16 7 N -0.76 -13.64 5.72 -59.86 -0.34 -13.99 16 8 C 0.21 4.80 6.64 -83.86 -0.56 4.24 16 9 C -0.30 -6.53 9.32 -39.08 -0.36 -6.90 16 10 C -0.07 -1.48 10.02 -39.69 -0.40 -1.88 16 11 C -0.26 -6.37 9.79 -38.83 -0.38 -6.75 16 12 C 0.14 3.72 5.57 -106.85 -0.60 3.12 16 13 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 14 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 15 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 16 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 17 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.23 -5.87 8.53 -38.68 -0.33 -6.20 16 22 C 0.17 2.13 11.01 -17.20 -0.19 1.94 16 23 N -0.52 -6.96 10.34 -10.73 -0.11 -7.08 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 29 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 30 H 0.39 6.97 8.47 -40.82 -0.35 6.62 16 31 H 0.09 1.65 6.70 -52.49 -0.35 1.29 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 34 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 35 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 36 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.26 312.67 -9.47 -38.73 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.35 Total: 10.40 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -4.84 Total: -19.62 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.04 Total: -47.99 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.26 -9.47 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656262071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.972 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds