Wall clock time and date at job start Mon Mar 30 2020 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31788 * 119.12157 * 2 1 4 4 C 1.32338 * 120.81728 * 179.97438 * 3 2 1 5 5 C 1.38593 * 119.10271 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.79916 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47047 * 89.99887 * 6 5 4 8 8 C 1.39685 * 120.00341 * 180.02562 * 7 6 5 9 9 C 1.39337 * 119.94932 * 359.97438 * 8 7 6 10 10 C 1.38478 * 120.42823 * 180.02562 * 9 8 7 11 11 C 1.37688 * 120.32117 * 359.97438 * 10 9 8 12 12 C 1.40752 * 119.89434 * 0.03305 * 11 10 9 13 13 C 1.41411 * 120.20601 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00317 * 24.35956 * 13 12 11 15 15 C 1.39935 * 119.99624 * 204.36087 * 13 12 11 16 16 N 1.30827 * 120.00201 * 17.84631 * 15 13 12 17 17 Si 1.86796 * 119.99610 * 197.84653 * 15 13 12 18 18 H 1.48501 * 109.47546 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47184 * 119.99998 * 17 15 13 20 20 H 1.48498 * 109.47199 * 240.00043 * 17 15 13 21 21 C 1.38275 * 119.95691 * 179.97438 * 8 7 6 22 22 C 1.38592 * 118.40208 * 0.27177 * 5 4 3 23 23 N 1.31797 * 119.12080 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47056 * 89.99601 * 1 2 3 25 25 H 1.08998 * 109.47400 * 210.00050 * 1 2 3 26 26 H 1.09006 * 109.47153 * 330.00060 * 1 2 3 27 27 H 1.08005 * 120.44838 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46971 * 330.00359 * 6 5 4 29 29 H 1.09002 * 109.47340 * 209.99736 * 6 5 4 30 30 H 0.97003 * 120.00136 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.78413 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.84142 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.05363 * 179.97438 * 11 10 9 34 34 H 0.97003 * 119.99955 * 179.97438 * 16 15 13 35 35 H 1.08008 * 120.15896 * 359.70358 * 21 8 7 36 36 H 1.08006 * 120.44910 * 179.73286 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 0.0005 5 6 4.1808 0.0000 0.0005 6 6 5.6878 -0.0001 0.0005 7 7 6.1762 0.0000 1.3817 8 6 7.5495 0.0005 1.6370 9 6 8.4541 0.0005 0.5772 10 6 9.8176 0.0004 0.8190 11 6 10.2945 0.0010 2.1106 12 6 9.3928 0.0009 3.1914 13 6 9.8755 0.0009 4.5206 14 1 10.8606 0.3867 4.7374 15 6 9.0766 -0.4991 5.5549 16 7 8.0573 -1.2716 5.2793 17 14 9.4655 -0.0635 7.3293 18 1 10.6601 0.8175 7.3724 19 1 8.3064 0.6436 7.9309 20 1 9.7395 -1.3058 8.0953 21 6 8.0093 0.0010 2.9411 22 6 3.4712 -1.1905 -0.0058 23 7 2.1484 -1.1514 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 3.9907 2.1373 0.0009 28 1 6.0512 0.8900 -0.5133 29 1 6.0512 -0.8901 -0.5133 30 1 5.5458 0.0004 2.1190 31 1 8.0894 0.0004 -0.4393 32 1 10.5102 0.0000 -0.0096 33 1 11.3588 0.0006 2.2942 34 1 7.5038 -1.6185 5.9964 35 1 7.3091 0.0059 3.7634 36 1 3.9907 -2.1374 -0.0104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656262071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:27 Heat of formation + Delta-G solvation = 46.540402 kcal Electronic energy + Delta-G solvation = -18905.836839 eV Core-core repulsion = 15967.608401 eV Total energy + Delta-G solvation = -2938.228439 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16186 -39.61271 -37.03293 -35.36031 -34.78706 -34.04140 -31.32958 -31.01339 -28.81218 -27.13101 -25.81611 -25.72493 -23.30215 -22.57404 -21.65419 -19.08916 -18.81708 -17.96617 -17.56671 -16.69153 -16.53692 -16.30498 -15.86077 -15.04962 -14.90232 -14.52118 -14.50577 -14.39227 -14.18291 -13.90392 -13.48939 -13.37643 -13.23222 -12.89235 -12.73108 -12.47836 -12.11225 -11.91474 -11.90301 -11.54423 -11.31516 -11.09780 -10.56272 -10.39957 -10.26199 -9.23547 -8.62447 -7.92456 -6.31265 -0.26871 0.00829 1.08529 1.34502 1.38366 1.52600 1.57518 2.22741 2.52101 2.81697 2.96120 3.02453 3.11432 3.57974 3.64813 3.79935 3.90320 4.24875 4.53601 4.53837 4.64941 4.69117 4.73920 4.82448 4.99912 5.00074 5.01319 5.20608 5.31029 5.40540 5.44979 5.58797 5.88138 5.95533 6.12355 6.22517 6.26281 6.58585 6.93368 7.00225 7.00580 7.06890 7.22833 8.37883 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.004110 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.785386 B = 6810.364124 C = 7776.042627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.301 3.699 3 N -0.537 5.537 4 C 0.166 3.834 5 C -0.208 4.208 6 C 0.190 3.810 7 N -0.752 5.752 8 C 0.221 3.779 9 C -0.297 4.297 10 C -0.063 4.063 11 C -0.285 4.285 12 C 0.107 3.893 13 C -0.504 4.504 14 H 0.071 0.929 15 C 0.038 3.962 16 N -0.823 5.823 17 Si 0.977 3.023 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.258 4.258 22 C 0.164 3.836 23 N -0.537 5.537 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.389 0.611 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.284 0.716 35 H 0.096 0.904 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 1.990 -8.867 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.035 3.965 3 N -0.251 5.251 4 C -0.001 4.001 5 C -0.213 4.213 6 C 0.065 3.935 7 N -0.384 5.384 8 C 0.121 3.879 9 C -0.319 4.319 10 C -0.081 4.081 11 C -0.306 4.306 12 C 0.104 3.896 13 C -0.534 4.534 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.798 3.202 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.282 4.282 22 C -0.002 4.002 23 N -0.252 5.252 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.204 0.796 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.222 0.778 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.199 1.842 -8.989 16.075 hybrid contribution 1.146 -0.052 1.239 1.689 sum -12.053 1.790 -7.751 14.441 Atomic orbital electron populations 1.20688 0.83473 1.04926 1.05019 1.24021 0.99840 0.83386 0.89293 1.68393 1.10339 1.30759 1.15604 1.23574 0.89332 0.99230 0.87916 1.21643 0.98124 0.95830 1.05668 1.19884 0.86622 1.02768 0.84205 1.44493 1.02805 1.84886 1.06212 1.17694 0.83613 0.93423 0.93214 1.20248 0.92526 1.22569 0.96584 1.20673 0.95149 0.96761 0.95547 1.21038 0.97566 1.18557 0.93395 1.17707 0.91883 0.86755 0.93208 1.19827 1.02467 1.38368 0.92699 0.91130 1.26676 0.93633 0.91873 1.05486 1.69925 1.15423 1.23241 1.36292 0.85246 0.79449 0.79137 0.76376 1.18286 1.19062 1.19116 1.20636 0.95743 1.18134 0.93700 1.23548 0.89384 0.99265 0.88002 1.68394 1.10321 1.30863 1.15612 0.88045 0.88910 0.88821 0.79648 0.90523 0.90954 0.77817 0.86205 0.86227 0.89347 0.90579 0.88562 0.80007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.32 71.24 0.74 -0.56 16 2 C 0.30 7.11 7.64 138.75 1.06 8.17 16 3 N -0.54 -13.26 10.33 -187.84 -1.94 -15.20 16 4 C 0.17 3.80 11.01 84.70 0.93 4.73 16 5 C -0.21 -4.86 5.28 -19.69 -0.10 -4.96 16 6 C 0.19 4.85 5.08 85.63 0.44 5.28 16 7 N -0.75 -26.03 5.72 -343.29 -1.96 -28.00 16 8 C 0.22 9.76 6.64 38.16 0.25 10.01 16 9 C -0.30 -12.25 9.32 22.59 0.21 -12.04 16 10 C -0.06 -2.73 10.02 22.20 0.22 -2.50 16 11 C -0.28 -14.37 9.79 22.75 0.22 -14.15 16 12 C 0.11 5.95 5.57 -21.31 -0.12 5.83 16 13 C -0.50 -28.06 9.05 23.46 0.21 -27.84 16 14 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 15 C 0.04 1.96 5.14 85.25 0.44 2.40 16 16 N -0.82 -43.86 10.95 21.82 0.24 -43.62 16 17 Si 0.98 39.26 29.59 68.60 2.03 41.29 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 C -0.26 -13.55 8.53 22.85 0.19 -13.36 16 22 C 0.16 3.89 11.01 84.70 0.93 4.82 16 23 N -0.54 -13.55 10.34 -187.85 -1.94 -15.49 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 27 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.08 1.81 7.90 -2.39 -0.02 1.79 16 29 H 0.07 1.77 7.90 -2.39 -0.02 1.75 16 30 H 0.39 13.68 8.47 -92.71 -0.79 12.89 16 31 H 0.12 4.10 6.70 -2.91 -0.02 4.08 16 32 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 35 H 0.10 5.35 6.16 -2.91 -0.02 5.33 16 36 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -64.12 312.67 2.37 -61.75 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.32 Total: 33.44 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 5.63 Total: -34.17 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -5.61 Total: -102.31 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -64.12 2.37 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656262071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.292 kcal (2) G-P(sol) polarization free energy of solvation -64.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds