Wall clock time and date at job start Mon Mar 30 2020 00:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47318 * 2 1 4 4 C 1.53000 * 109.46881 * 239.99878 * 2 1 3 5 5 C 1.50706 * 109.47213 * 175.00160 * 4 2 1 6 6 C 1.33385 * 125.20333 * 89.71524 * 5 4 2 7 7 C 1.38424 * 114.92471 * 179.86428 * 6 5 4 8 8 C 1.33398 * 114.91502 * 0.42825 * 7 6 5 9 9 S 1.75883 * 125.20091 * 270.02684 * 5 4 2 10 10 N 1.46902 * 109.47150 * 120.00334 * 2 1 3 11 11 C 1.46897 * 111.00232 * 58.94612 * 10 2 1 12 12 C 1.46900 * 110.99736 * 294.99799 * 10 2 1 13 13 C 1.53005 * 109.46905 * 288.17314 * 12 10 2 14 14 H 1.09000 * 109.47473 * 58.54804 * 13 12 10 15 15 O 1.42894 * 109.47144 * 298.54370 * 13 12 10 16 16 C 1.50703 * 109.47012 * 178.54403 * 13 12 10 17 17 H 1.08001 * 120.00184 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99923 * 179.72266 * 16 13 12 19 19 N 1.31507 * 120.00152 * 0.27694 * 18 16 13 20 20 Si 1.86806 * 119.99792 * 180.27864 * 18 16 13 21 21 H 1.48497 * 109.47384 * 60.00097 * 20 18 16 22 22 H 1.48499 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47150 * 299.99964 * 20 18 16 24 24 H 1.09001 * 109.47245 * 59.99999 * 1 2 3 25 25 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47296 * 300.00032 * 1 2 3 27 27 H 1.08998 * 109.47396 * 295.00003 * 4 2 1 28 28 H 1.08997 * 109.47423 * 55.00066 * 4 2 1 29 29 H 1.08001 * 122.54262 * 0.02562 * 6 5 4 30 30 H 1.08000 * 122.54765 * 180.20517 * 7 6 5 31 31 H 1.07991 * 125.20189 * 179.79062 * 8 7 6 32 32 H 1.08995 * 109.47806 * 300.40797 * 11 10 2 33 33 H 1.09008 * 109.46696 * 60.41019 * 11 10 2 34 34 H 1.08997 * 109.47140 * 180.40137 * 11 10 2 35 35 H 1.08991 * 109.47325 * 168.17348 * 12 10 2 36 36 H 1.08999 * 109.47395 * 48.16903 * 12 10 2 37 37 H 0.96711 * 114.00032 * 300.00362 * 15 13 12 38 38 H 0.97002 * 120.00272 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 6 4.3977 -1.4824 -0.7703 7 6 5.7349 -1.1791 -0.9605 8 6 5.9648 -0.0604 -1.6499 9 16 4.4343 0.6759 -2.1070 10 7 2.0196 -0.6926 1.1994 11 6 1.5282 -2.0761 1.2460 12 6 1.6487 0.0391 2.4180 13 6 2.4868 1.3149 2.5219 14 1 2.3216 1.9312 1.6382 15 8 3.8707 0.9699 2.6100 16 6 2.0813 2.0835 3.7532 17 1 1.3039 1.7001 4.3974 18 6 2.7071 3.2730 4.0606 19 7 3.6541 3.7396 3.2764 20 14 2.2098 4.2217 5.5910 21 1 2.4346 3.3774 6.7917 22 1 3.0274 5.4570 5.6951 23 1 0.7726 4.5847 5.5031 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2618 -2.1370 29 1 4.0722 -2.3567 -0.2261 30 1 6.5316 -1.7990 -0.5767 31 1 6.9413 0.3328 -1.8908 32 1 0.4383 -2.0745 1.2567 33 1 1.8821 -2.6171 0.3683 34 1 1.8997 -2.5635 2.1474 35 1 1.8336 -0.5890 3.2894 36 1 0.5915 0.3013 2.3768 37 1 4.0912 0.4205 3.3748 38 1 4.0947 4.5763 3.4929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657519030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:05 Heat of formation + Delta-G solvation = -11.843212 kcal Electronic energy + Delta-G solvation = -19261.834426 eV Core-core repulsion = 16424.225484 eV Total energy + Delta-G solvation = -2837.608942 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.68521 -37.02694 -35.11258 -32.15816 -31.94260 -29.46604 -28.56711 -26.04859 -25.67316 -23.81408 -22.61968 -21.02143 -18.85042 -18.80029 -16.91679 -16.71176 -15.60314 -15.10391 -14.69223 -14.50064 -14.29398 -13.59734 -13.44478 -13.17766 -12.81348 -12.59309 -12.23730 -12.10030 -12.05056 -11.81719 -11.29358 -11.19122 -11.04617 -10.97515 -10.85582 -10.80057 -10.57495 -10.31004 -10.17213 -9.93180 -8.90921 -8.50229 -8.12301 -8.00628 -7.96621 -7.45838 -5.93932 -4.12488 1.49893 2.11330 2.46117 3.27628 3.31061 3.36636 3.37973 4.37312 4.56226 5.05995 5.26117 5.33302 5.45027 5.50052 5.56402 5.62398 5.66695 5.85181 5.86873 6.00847 6.01429 6.03120 6.13115 6.20656 6.26338 6.48871 6.55803 6.61717 6.71322 6.78794 6.92343 6.98515 7.63544 7.70936 7.84348 7.98418 8.28066 8.91462 9.53864 9.71766 11.09655 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.006261 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.207846 B = 4471.344720 C = 5191.057285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.091 0.909 4 C -0.041 4.041 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.220 4.220 9 S 0.079 5.921 10 N -0.514 5.514 11 C 0.017 3.983 12 C 0.027 3.973 13 C 0.242 3.758 14 H 0.051 0.949 15 O -0.550 6.550 16 C -0.576 4.576 17 H 0.052 0.948 18 C 0.081 3.919 19 N -0.856 5.856 20 Si 0.886 3.114 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.339 0.661 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -10.352 -9.828 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.025 4.025 3 H 0.109 0.891 4 C -0.081 4.081 5 C -0.261 4.261 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.355 4.355 9 S 0.342 5.658 10 N -0.237 5.237 11 C -0.131 4.131 12 C -0.101 4.101 13 C 0.184 3.816 14 H 0.069 0.931 15 O -0.351 6.351 16 C -0.614 4.614 17 H 0.070 0.930 18 C -0.125 4.125 19 N -0.491 5.491 20 Si 0.713 3.287 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.173 0.827 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.181 0.819 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.179 -8.556 -11.260 14.191 hybrid contribution -0.795 -0.861 2.453 2.719 sum -1.975 -9.418 -8.807 13.044 Atomic orbital electron populations 1.22475 0.98082 1.01604 1.02547 1.21702 0.91661 0.99424 0.89746 0.89067 1.20271 0.88642 1.01477 0.97706 1.24125 0.98868 0.98078 1.05078 1.19862 0.91875 1.01723 1.01651 1.20077 0.97062 0.97893 1.00840 1.25380 1.00738 1.00709 1.08691 1.84079 0.98109 1.28231 1.55428 1.62233 1.58461 1.00920 1.02127 1.22469 0.97250 0.91763 1.01634 1.23149 0.98600 0.98358 0.89946 1.19222 0.78745 0.87446 0.96181 0.93124 1.86596 1.27508 1.72650 1.48321 1.21647 1.21922 1.07144 1.10722 0.93006 1.25004 0.94370 0.96940 0.96202 1.70077 1.22733 1.19794 1.36540 0.86793 0.78528 0.79448 0.83896 1.20225 1.21221 1.20286 0.92486 0.92749 0.91633 0.90332 0.91117 0.85001 0.85113 0.82708 0.96229 0.92124 0.92143 0.92234 0.95115 0.81879 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.53 37.16 0.32 -2.37 16 2 C 0.08 1.38 2.23 -67.71 -0.15 1.23 16 3 H 0.09 1.82 6.50 -51.93 -0.34 1.48 16 4 C -0.04 -0.58 5.00 -27.88 -0.14 -0.72 16 5 C -0.14 -2.25 5.53 -36.00 -0.20 -2.45 16 6 C -0.12 -1.88 9.88 -41.21 -0.41 -2.29 16 7 C -0.13 -1.91 10.18 -41.20 -0.42 -2.33 16 8 C -0.22 -3.29 11.23 29.04 0.33 -2.97 16 9 S 0.08 1.23 23.33 -107.50 -2.51 -1.28 16 10 N -0.51 -9.01 4.17 -234.89 -0.98 -9.99 16 11 C 0.02 0.25 8.80 60.06 0.53 0.77 16 12 C 0.03 0.55 4.45 -3.82 -0.02 0.53 16 13 C 0.24 6.16 2.84 -27.88 -0.08 6.08 16 14 H 0.05 1.44 6.62 -51.93 -0.34 1.10 16 15 O -0.55 -14.59 12.61 -35.23 -0.44 -15.03 16 16 C -0.58 -15.92 8.76 -34.44 -0.30 -16.23 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.08 2.30 5.40 -17.82 -0.10 2.20 16 19 N -0.86 -25.64 12.83 55.43 0.71 -24.93 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 26 H 0.06 1.04 6.30 -51.93 -0.33 0.72 16 27 H 0.08 0.97 6.18 -51.93 -0.32 0.65 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.02 0.26 6.26 -51.93 -0.33 -0.06 16 33 H 0.06 0.76 5.81 -51.92 -0.30 0.46 16 34 H 0.06 0.84 7.99 -51.93 -0.42 0.43 16 35 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 36 H 0.03 0.63 5.98 -51.93 -0.31 0.32 16 37 H 0.34 8.20 9.04 45.56 0.41 8.61 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -30.76 317.64 -8.74 -39.49 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.64 Total: 9.12 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.64 Total: -18.53 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.27 Total: -34.92 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.44 Total: -15.03 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.51 Total: -1.28 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.76 -8.74 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657519030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.649 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds