Wall clock time and date at job start Mon Mar 30 2020 00:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47318 * 2 1 4 4 C 1.53000 * 109.46881 * 239.99878 * 2 1 3 5 5 C 1.50706 * 109.47213 * 175.00160 * 4 2 1 6 6 C 1.33385 * 125.20333 * 89.71524 * 5 4 2 7 7 C 1.38424 * 114.92471 * 179.86428 * 6 5 4 8 8 C 1.33398 * 114.91502 * 0.42825 * 7 6 5 9 9 S 1.75883 * 125.20091 * 270.02684 * 5 4 2 10 10 N 1.46902 * 109.47150 * 120.00334 * 2 1 3 11 11 C 1.46897 * 111.00232 * 58.94612 * 10 2 1 12 12 C 1.46900 * 110.99736 * 294.99799 * 10 2 1 13 13 C 1.53005 * 109.46905 * 288.17314 * 12 10 2 14 14 H 1.09000 * 109.47473 * 58.54804 * 13 12 10 15 15 O 1.42894 * 109.47144 * 298.54370 * 13 12 10 16 16 C 1.50703 * 109.47012 * 178.54403 * 13 12 10 17 17 H 1.08001 * 120.00184 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99923 * 179.72266 * 16 13 12 19 19 N 1.31507 * 120.00152 * 0.27694 * 18 16 13 20 20 Si 1.86806 * 119.99792 * 180.27864 * 18 16 13 21 21 H 1.48497 * 109.47384 * 60.00097 * 20 18 16 22 22 H 1.48499 * 109.46945 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47150 * 299.99964 * 20 18 16 24 24 H 1.09001 * 109.47245 * 59.99999 * 1 2 3 25 25 H 1.08999 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47296 * 300.00032 * 1 2 3 27 27 H 1.08998 * 109.47396 * 295.00003 * 4 2 1 28 28 H 1.08997 * 109.47423 * 55.00066 * 4 2 1 29 29 H 1.08001 * 122.54262 * 0.02562 * 6 5 4 30 30 H 1.08000 * 122.54765 * 180.20517 * 7 6 5 31 31 H 1.07991 * 125.20189 * 179.79062 * 8 7 6 32 32 H 1.08995 * 109.47806 * 300.40797 * 11 10 2 33 33 H 1.09008 * 109.46696 * 60.41019 * 11 10 2 34 34 H 1.08997 * 109.47140 * 180.40137 * 11 10 2 35 35 H 1.08991 * 109.47325 * 168.17348 * 12 10 2 36 36 H 1.08999 * 109.47395 * 48.16903 * 12 10 2 37 37 H 0.96711 * 114.00032 * 300.00362 * 15 13 12 38 38 H 0.97002 * 120.00272 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 6 4.3977 -1.4824 -0.7703 7 6 5.7349 -1.1791 -0.9605 8 6 5.9648 -0.0604 -1.6499 9 16 4.4343 0.6759 -2.1070 10 7 2.0196 -0.6926 1.1994 11 6 1.5282 -2.0761 1.2460 12 6 1.6487 0.0391 2.4180 13 6 2.4868 1.3149 2.5219 14 1 2.3216 1.9312 1.6382 15 8 3.8707 0.9699 2.6100 16 6 2.0813 2.0835 3.7532 17 1 1.3039 1.7001 4.3974 18 6 2.7071 3.2730 4.0606 19 7 3.6541 3.7396 3.2764 20 14 2.2098 4.2217 5.5910 21 1 2.4346 3.3774 6.7917 22 1 3.0274 5.4570 5.6951 23 1 0.7726 4.5847 5.5031 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2618 -2.1370 29 1 4.0722 -2.3567 -0.2261 30 1 6.5316 -1.7990 -0.5767 31 1 6.9413 0.3328 -1.8908 32 1 0.4383 -2.0745 1.2567 33 1 1.8821 -2.6171 0.3683 34 1 1.8997 -2.5635 2.1474 35 1 1.8336 -0.5890 3.2894 36 1 0.5915 0.3013 2.3768 37 1 4.0912 0.4205 3.3748 38 1 4.0947 4.5763 3.4929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657519030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:05 Heat of formation + Delta-G solvation = -32.827123 kcal Electronic energy + Delta-G solvation = -19262.744356 eV Core-core repulsion = 16424.225484 eV Total energy + Delta-G solvation = -2838.518873 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02828 -38.31353 -36.99629 -34.19305 -33.40834 -30.66888 -30.33926 -27.42553 -27.16986 -25.32017 -23.91828 -22.76361 -20.26713 -19.98216 -18.98237 -17.92155 -16.95009 -16.65160 -16.39701 -16.25771 -15.87106 -15.23754 -14.89632 -14.47289 -14.32772 -13.98573 -13.59379 -13.41344 -13.27629 -13.01973 -12.96399 -12.85579 -12.76006 -12.47319 -12.43089 -12.14421 -12.08936 -11.94516 -11.58423 -11.41473 -10.90907 -10.65155 -10.02440 -9.30235 -9.20177 -8.86105 -8.09922 -6.36215 0.31092 0.93291 1.27954 1.39496 1.41125 1.49190 2.09802 2.39103 3.14476 3.18750 3.88425 4.05763 4.23078 4.33951 4.36281 4.41487 4.49160 4.55546 4.62271 4.69318 4.74062 4.83731 4.87998 4.91480 4.94541 5.05702 5.17144 5.26245 5.35982 5.44195 5.60576 5.63247 5.82026 5.83233 6.08415 6.31537 6.46831 6.78417 7.37895 7.69045 8.93601 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.006261 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.207846 B = 4471.344720 C = 5191.057285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.034 4.034 5 C -0.154 4.154 6 C -0.130 4.130 7 C -0.137 4.137 8 C -0.227 4.227 9 S 0.044 5.956 10 N -0.526 5.526 11 C 0.018 3.982 12 C 0.046 3.954 13 C 0.246 3.754 14 H 0.011 0.989 15 O -0.566 6.566 16 C -0.590 4.590 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.897 5.897 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.269 1.269 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.174 0.826 32 H 0.032 0.968 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.347 0.653 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 -11.989 -9.415 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.074 4.074 5 C -0.272 4.272 6 C -0.159 4.159 7 C -0.168 4.168 8 C -0.362 4.362 9 S 0.307 5.693 10 N -0.249 5.249 11 C -0.129 4.129 12 C -0.083 4.083 13 C 0.188 3.812 14 H 0.029 0.971 15 O -0.369 6.369 16 C -0.628 4.628 17 H 0.075 0.925 18 C -0.176 4.176 19 N -0.534 5.534 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.194 1.194 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.103 0.897 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.050 0.950 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.191 0.809 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.091 -10.216 -10.847 15.047 hybrid contribution -0.482 -0.378 2.289 2.370 sum -2.573 -10.594 -8.558 13.860 Atomic orbital electron populations 1.22386 0.96263 1.02988 1.02260 1.21604 0.93065 0.97265 0.90443 0.93730 1.20288 0.87594 1.02663 0.96840 1.24390 0.99817 0.97708 1.05238 1.20124 0.92147 1.02115 1.01523 1.20414 0.97680 0.98106 1.00585 1.25692 1.01035 1.00743 1.08748 1.84169 0.99548 1.29412 1.56175 1.62106 1.59392 1.02335 1.01091 1.22535 0.98081 0.89404 1.02902 1.22704 0.97314 0.96403 0.91833 1.19032 0.79049 0.89359 0.93780 0.97103 1.86543 1.28403 1.73080 1.48833 1.22076 1.21762 1.07603 1.11380 0.92511 1.25873 0.94271 0.98030 0.99396 1.70233 1.24243 1.20319 1.38629 0.85676 0.78367 0.77900 0.79994 1.19177 1.21114 1.19393 0.90970 0.90385 0.93767 0.87852 0.89655 0.83723 0.82964 0.80849 0.94971 0.89969 0.91820 0.91805 0.95161 0.80934 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 8.53 71.98 0.61 -4.25 16 2 C 0.09 2.76 2.23 44.91 0.10 2.86 16 3 H 0.04 1.86 6.50 -2.39 -0.02 1.84 16 4 C -0.03 -0.90 5.00 29.85 0.15 -0.75 16 5 C -0.15 -4.70 5.53 24.59 0.14 -4.56 16 6 C -0.13 -3.82 9.88 21.22 0.21 -3.61 16 7 C -0.14 -3.94 10.18 21.22 0.22 -3.72 16 8 C -0.23 -6.69 11.23 66.72 0.75 -5.94 16 9 S 0.04 1.41 23.33 -56.49 -1.32 0.09 16 10 N -0.53 -17.82 4.17 -897.06 -3.74 -21.57 16 11 C 0.02 0.47 8.80 127.69 1.12 1.59 16 12 C 0.05 1.85 4.45 86.30 0.38 2.24 16 13 C 0.25 12.82 2.84 29.85 0.08 12.90 16 14 H 0.01 0.67 6.62 -2.39 -0.02 0.65 16 15 O -0.57 -30.70 12.61 -148.98 -1.88 -32.57 16 16 C -0.59 -32.95 8.76 25.60 0.22 -32.73 16 17 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 18 C 0.03 1.53 5.40 84.66 0.46 1.98 16 19 N -0.90 -55.03 12.83 21.45 0.28 -54.75 16 20 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.08 1.73 6.38 -2.39 -0.02 1.72 16 26 H 0.04 1.37 6.30 -2.39 -0.02 1.36 16 27 H 0.10 2.19 6.18 -2.39 -0.01 2.18 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.15 3.81 7.62 -2.91 -0.02 3.79 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.17 4.26 8.06 -2.92 -0.02 4.24 16 32 H 0.03 0.75 6.26 -2.39 -0.01 0.73 16 33 H 0.08 1.74 5.81 -2.38 -0.01 1.73 16 34 H 0.06 1.59 7.99 -2.39 -0.02 1.57 16 35 H 0.06 2.52 7.90 -2.39 -0.02 2.50 16 36 H 0.03 1.23 5.98 -2.39 -0.01 1.21 16 37 H 0.35 17.01 9.04 -74.05 -0.67 16.34 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -67.12 317.64 0.20 -66.92 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.39 Total: 29.82 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 4.45 Total: -34.00 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -3.47 Total: -76.32 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.88 Total: -32.57 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -67.12 0.20 -66.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657519030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds