Wall clock time and date at job start Mon Mar 30 2020 00:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.53002 * 109.47125 * 119.99747 * 2 1 3 5 5 C 1.50699 * 109.46978 * 181.42187 * 4 2 1 6 6 C 1.33383 * 125.20118 * 84.64164 * 5 4 2 7 7 C 1.38426 * 114.92272 * 180.02562 * 6 5 4 8 8 C 1.33388 * 114.91902 * 0.25057 * 7 6 5 9 9 S 1.75887 * 125.20324 * 264.68278 * 5 4 2 10 10 N 1.46894 * 109.47074 * 239.99829 * 2 1 3 11 11 C 1.46910 * 111.00142 * 73.11388 * 10 2 1 12 12 C 1.46899 * 111.00246 * 309.16303 * 10 2 1 13 13 C 1.52996 * 109.47521 * 197.01134 * 12 10 2 14 14 H 1.09000 * 109.47414 * 53.44098 * 13 12 10 15 15 O 1.42899 * 109.47036 * 293.44216 * 13 12 10 16 16 C 1.50703 * 109.47620 * 173.44422 * 13 12 10 17 17 H 1.07997 * 119.99682 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00010 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00188 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99774 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47430 * 119.99441 * 20 18 16 23 23 H 1.48498 * 109.47061 * 239.99519 * 20 18 16 24 24 H 1.08995 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46643 * 299.99992 * 1 2 3 26 26 H 1.08996 * 109.47416 * 59.99994 * 1 2 3 27 27 H 1.09004 * 109.47134 * 61.42390 * 4 2 1 28 28 H 1.09001 * 109.47170 * 301.42474 * 4 2 1 29 29 H 1.08001 * 122.54638 * 0.02562 * 6 5 4 30 30 H 1.07996 * 122.54294 * 179.97438 * 7 6 5 31 31 H 1.07999 * 125.20702 * 179.75520 * 8 7 6 32 32 H 1.09000 * 109.46653 * 51.99809 * 11 10 2 33 33 H 1.09000 * 109.46780 * 172.00220 * 11 10 2 34 34 H 1.09000 * 109.46667 * 292.00311 * 11 10 2 35 35 H 1.09005 * 109.46713 * 317.00633 * 12 10 2 36 36 H 1.08996 * 109.47521 * 77.00685 * 12 10 2 37 37 H 0.96704 * 114.00140 * 300.00052 * 15 13 12 38 38 H 0.96996 * 120.00145 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5466 -0.6907 1.2670 6 6 4.2899 0.3115 1.7385 7 6 5.6574 0.1157 1.6492 8 6 6.0245 -1.0433 1.1004 9 16 4.5938 -1.9708 0.6682 10 7 2.0197 -0.6925 -1.1994 11 6 1.8196 0.1294 -2.4005 12 6 1.3786 -2.0059 -1.3476 13 6 2.1881 -2.8613 -2.3242 14 1 3.2285 -2.8956 -2.0011 15 8 2.1141 -2.2901 -3.6320 16 6 1.6250 -4.2589 -2.3540 17 1 0.7750 -4.5118 -1.7376 18 6 2.1956 -5.2148 -3.1674 19 7 3.2309 -4.9069 -3.9176 20 14 1.4971 -6.9469 -3.2048 21 1 0.3411 -7.0346 -2.2767 22 1 1.0511 -7.2712 -4.5836 23 1 2.5441 -7.9120 -2.7834 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6977 -1.7560 1.2367 28 1 1.6560 -0.2223 2.1391 29 1 3.8577 1.2079 2.1581 30 1 6.3728 0.8478 1.9935 31 1 7.0442 -1.3642 0.9467 32 1 2.2417 1.1209 -2.2366 33 1 2.3157 -0.3411 -3.2494 34 1 0.7529 0.2181 -2.6064 35 1 1.3381 -2.5019 -0.3777 36 1 0.3669 -1.8752 -1.7314 37 1 1.2155 -2.2282 -3.9839 38 1 3.6321 -5.5793 -4.4901 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657519031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:07 Heat of formation + Delta-G solvation = -15.486531 kcal Electronic energy + Delta-G solvation = -19212.875108 eV Core-core repulsion = 16375.108180 eV Total energy + Delta-G solvation = -2837.766928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.62392 -37.18195 -35.23449 -32.25084 -31.88605 -29.51103 -28.59469 -26.19959 -25.32447 -23.86728 -22.62292 -21.10300 -19.24749 -18.63322 -16.93156 -16.64103 -15.57150 -15.00836 -14.77647 -14.53872 -14.29096 -13.60250 -13.47150 -13.21227 -12.78677 -12.45737 -12.35795 -12.28072 -12.06456 -11.74868 -11.36810 -11.30576 -11.01333 -10.95965 -10.83188 -10.75081 -10.58277 -10.31662 -10.09404 -9.91270 -8.96463 -8.52836 -8.23615 -8.08667 -7.91450 -7.45197 -5.96449 -4.14299 1.46108 2.17129 2.56194 3.11664 3.28103 3.36646 3.39312 4.36891 4.57873 5.00997 5.20263 5.30239 5.36515 5.41192 5.58378 5.62338 5.75978 5.84094 5.87557 5.96006 6.03663 6.06071 6.14610 6.20715 6.29983 6.43784 6.51273 6.51992 6.68115 6.80979 6.88986 7.03872 7.61715 7.79046 7.81259 8.05289 8.26682 8.89433 9.43421 9.62960 11.07424 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.006579 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.194184 B = 4254.784711 C = 4996.774475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.044 4.044 5 C -0.145 4.145 6 C -0.165 4.165 7 C -0.139 4.139 8 C -0.242 4.242 9 S 0.164 5.836 10 N -0.523 5.523 11 C 0.020 3.980 12 C 0.031 3.969 13 C 0.236 3.764 14 H 0.068 0.932 15 O -0.560 6.560 16 C -0.571 4.571 17 H 0.053 0.947 18 C 0.081 3.919 19 N -0.856 5.856 20 Si 0.884 3.116 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.012 0.988 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.339 0.661 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 10.018 9.935 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.093 0.907 4 C -0.084 4.084 5 C -0.263 4.263 6 C -0.195 4.195 7 C -0.170 4.170 8 C -0.378 4.378 9 S 0.430 5.570 10 N -0.246 5.246 11 C -0.128 4.128 12 C -0.097 4.097 13 C 0.178 3.822 14 H 0.086 0.914 15 O -0.362 6.362 16 C -0.610 4.610 17 H 0.071 0.929 18 C -0.125 4.125 19 N -0.492 5.492 20 Si 0.712 3.288 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.172 0.828 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.182 0.818 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.401 8.479 9.280 12.577 hybrid contribution -1.576 0.515 0.446 1.717 sum -1.175 8.994 9.726 13.299 Atomic orbital electron populations 1.22465 0.97789 1.02483 1.01526 1.21755 0.92022 0.97788 0.91296 0.90676 1.20274 0.88519 1.01971 0.97610 1.24305 0.99258 0.98644 1.04097 1.19887 0.93105 1.00030 1.06479 1.19953 0.95738 0.97881 1.03433 1.25686 1.02816 1.00664 1.08658 1.84971 0.94837 1.18862 1.58355 1.62280 1.57276 1.03540 1.01548 1.22656 0.98554 0.96679 0.94905 1.23117 0.96124 0.89028 1.01402 1.19422 0.96331 0.88022 0.78382 0.91395 1.86563 1.30353 1.84024 1.35266 1.21667 1.16452 0.96106 1.26734 0.92916 1.24997 0.94363 0.98230 0.94895 1.70089 1.21054 1.33390 1.24658 0.86693 0.79175 0.85134 0.77819 1.19811 1.20972 1.20889 0.91964 0.92780 0.92616 0.90518 0.90419 0.85469 0.85494 0.82767 0.93594 0.87946 0.96965 0.91805 0.95965 0.81823 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.45 37.16 0.31 -2.08 16 2 C 0.08 1.18 2.32 -67.71 -0.16 1.02 16 3 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 4 C -0.04 -0.62 5.14 -27.88 -0.14 -0.76 16 5 C -0.14 -2.21 5.40 -36.01 -0.19 -2.40 16 6 C -0.16 -2.30 10.05 -41.21 -0.41 -2.71 16 7 C -0.14 -1.90 10.18 -41.21 -0.42 -2.32 16 8 C -0.24 -3.55 11.23 29.04 0.33 -3.23 16 9 S 0.16 2.79 23.33 -107.50 -2.51 0.28 16 10 N -0.52 -9.23 4.25 -234.88 -1.00 -10.23 16 11 C 0.02 0.34 8.78 60.07 0.53 0.87 16 12 C 0.03 0.61 3.31 -3.83 -0.01 0.60 16 13 C 0.24 5.83 3.02 -27.88 -0.08 5.75 16 14 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 15 O -0.56 -13.92 9.79 -35.23 -0.35 -14.27 16 16 C -0.57 -15.43 8.76 -34.44 -0.30 -15.73 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 19 N -0.86 -25.15 12.84 55.43 0.71 -24.43 16 20 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.06 0.88 6.66 -51.93 -0.35 0.53 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.73 6.99 -51.93 -0.36 0.37 16 27 H 0.08 1.16 6.36 -51.93 -0.33 0.82 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 32 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.10 2.00 5.62 -51.93 -0.29 1.71 16 34 H 0.01 0.19 6.97 -51.93 -0.36 -0.17 16 35 H 0.06 1.28 6.04 -51.93 -0.31 0.96 16 36 H 0.02 0.44 7.12 -51.93 -0.37 0.07 16 37 H 0.34 7.60 9.04 45.56 0.41 8.01 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -29.56 318.38 -8.88 -38.45 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.86 Total: 8.19 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -0.66 Total: -18.84 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.29 Total: -34.67 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.35 Total: -14.27 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.51 Total: 0.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.56 -8.88 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657519031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.960 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds