Wall clock time and date at job start Mon Mar 30 2020 00:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.53002 * 109.47125 * 119.99747 * 2 1 3 5 5 C 1.50699 * 109.46978 * 181.42187 * 4 2 1 6 6 C 1.33383 * 125.20118 * 84.64164 * 5 4 2 7 7 C 1.38426 * 114.92272 * 180.02562 * 6 5 4 8 8 C 1.33388 * 114.91902 * 0.25057 * 7 6 5 9 9 S 1.75887 * 125.20324 * 264.68278 * 5 4 2 10 10 N 1.46894 * 109.47074 * 239.99829 * 2 1 3 11 11 C 1.46910 * 111.00142 * 73.11388 * 10 2 1 12 12 C 1.46899 * 111.00246 * 309.16303 * 10 2 1 13 13 C 1.52996 * 109.47521 * 197.01134 * 12 10 2 14 14 H 1.09000 * 109.47414 * 53.44098 * 13 12 10 15 15 O 1.42899 * 109.47036 * 293.44216 * 13 12 10 16 16 C 1.50703 * 109.47620 * 173.44422 * 13 12 10 17 17 H 1.07997 * 119.99682 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00010 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00188 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 119.99774 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47430 * 119.99441 * 20 18 16 23 23 H 1.48498 * 109.47061 * 239.99519 * 20 18 16 24 24 H 1.08995 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46643 * 299.99992 * 1 2 3 26 26 H 1.08996 * 109.47416 * 59.99994 * 1 2 3 27 27 H 1.09004 * 109.47134 * 61.42390 * 4 2 1 28 28 H 1.09001 * 109.47170 * 301.42474 * 4 2 1 29 29 H 1.08001 * 122.54638 * 0.02562 * 6 5 4 30 30 H 1.07996 * 122.54294 * 179.97438 * 7 6 5 31 31 H 1.07999 * 125.20702 * 179.75520 * 8 7 6 32 32 H 1.09000 * 109.46653 * 51.99809 * 11 10 2 33 33 H 1.09000 * 109.46780 * 172.00220 * 11 10 2 34 34 H 1.09000 * 109.46667 * 292.00311 * 11 10 2 35 35 H 1.09005 * 109.46713 * 317.00633 * 12 10 2 36 36 H 1.08996 * 109.47521 * 77.00685 * 12 10 2 37 37 H 0.96704 * 114.00140 * 300.00052 * 15 13 12 38 38 H 0.96996 * 120.00145 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5466 -0.6907 1.2670 6 6 4.2899 0.3115 1.7385 7 6 5.6574 0.1157 1.6492 8 6 6.0245 -1.0433 1.1004 9 16 4.5938 -1.9708 0.6682 10 7 2.0197 -0.6925 -1.1994 11 6 1.8196 0.1294 -2.4005 12 6 1.3786 -2.0059 -1.3476 13 6 2.1881 -2.8613 -2.3242 14 1 3.2285 -2.8956 -2.0011 15 8 2.1141 -2.2901 -3.6320 16 6 1.6250 -4.2589 -2.3540 17 1 0.7750 -4.5118 -1.7376 18 6 2.1956 -5.2148 -3.1674 19 7 3.2309 -4.9069 -3.9176 20 14 1.4971 -6.9469 -3.2048 21 1 0.3411 -7.0346 -2.2767 22 1 1.0511 -7.2712 -4.5836 23 1 2.5441 -7.9120 -2.7834 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6977 -1.7560 1.2367 28 1 1.6560 -0.2223 2.1391 29 1 3.8577 1.2079 2.1581 30 1 6.3728 0.8478 1.9935 31 1 7.0442 -1.3642 0.9467 32 1 2.2417 1.1209 -2.2366 33 1 2.3157 -0.3411 -3.2494 34 1 0.7529 0.2181 -2.6064 35 1 1.3381 -2.5019 -0.3777 36 1 0.3669 -1.8752 -1.7314 37 1 1.2155 -2.2282 -3.9839 38 1 3.6321 -5.5793 -4.4901 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657519031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:07 Heat of formation + Delta-G solvation = -35.034341 kcal Electronic energy + Delta-G solvation = -19213.722765 eV Core-core repulsion = 16375.108180 eV Total energy + Delta-G solvation = -2838.614585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96287 -38.42072 -36.99869 -34.24281 -33.30005 -30.86062 -30.19216 -27.43629 -27.01822 -25.29768 -23.83873 -22.81898 -20.60787 -19.81155 -18.83364 -17.92421 -16.96880 -16.58756 -16.37295 -16.23771 -15.86095 -15.12001 -14.88607 -14.40538 -14.36011 -13.79082 -13.73633 -13.51595 -13.31602 -13.10852 -12.97396 -12.85415 -12.63870 -12.43560 -12.39950 -12.18714 -12.01183 -11.91462 -11.53492 -11.29303 -10.92420 -10.64893 -9.98998 -9.34205 -9.21008 -8.86969 -8.08629 -6.33519 0.32265 0.99002 1.38872 1.40698 1.41324 1.51818 2.03455 2.40115 3.16965 3.21262 3.89219 4.06669 4.25034 4.30297 4.35516 4.46834 4.50360 4.55514 4.62780 4.76141 4.79972 4.83691 4.87114 4.93317 4.99386 5.07341 5.21621 5.30869 5.40089 5.44896 5.55461 5.67494 5.82594 5.87944 6.10672 6.40023 6.47830 6.80506 7.38591 7.61956 8.95314 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.006579 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.194184 B = 4254.784711 C = 4996.774475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 H 0.089 0.911 4 C -0.043 4.043 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.134 4.134 8 C -0.243 4.243 9 S 0.065 5.935 10 N -0.536 5.536 11 C 0.026 3.974 12 C 0.057 3.943 13 C 0.239 3.761 14 H 0.030 0.970 15 O -0.571 6.571 16 C -0.582 4.582 17 H 0.054 0.946 18 C 0.029 3.971 19 N -0.897 5.897 20 Si 0.952 3.048 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.281 1.281 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.024 0.976 37 H 0.348 0.652 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 11.686 11.499 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.026 4.026 3 H 0.107 0.893 4 C -0.082 4.082 5 C -0.263 4.263 6 C -0.189 4.189 7 C -0.165 4.165 8 C -0.378 4.378 9 S 0.329 5.671 10 N -0.259 5.259 11 C -0.122 4.122 12 C -0.071 4.071 13 C 0.181 3.819 14 H 0.047 0.953 15 O -0.375 6.375 16 C -0.621 4.621 17 H 0.072 0.928 18 C -0.173 4.173 19 N -0.534 5.534 20 Si 0.777 3.223 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.207 1.207 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.129 0.871 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.192 0.808 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.650 10.162 10.860 14.887 hybrid contribution -1.197 0.110 0.008 1.202 sum -1.847 10.272 10.868 15.068 Atomic orbital electron populations 1.22386 0.96303 1.01952 1.02912 1.21841 0.93174 0.97899 0.89710 0.89308 1.20338 0.87766 1.01355 0.98718 1.24427 0.99621 0.97847 1.04434 1.20278 0.93141 1.00350 1.05155 1.20374 0.96454 0.97712 1.01934 1.25846 1.02254 1.00648 1.09073 1.85349 0.98471 1.22328 1.60909 1.62141 1.57800 1.02966 1.03039 1.22518 0.98986 0.96953 0.93735 1.22602 0.95090 0.89866 0.99578 1.19207 0.94858 0.88449 0.79346 0.95265 1.86529 1.31219 1.83990 1.35716 1.22057 1.16234 0.97529 1.26260 0.92782 1.25811 0.94613 1.02334 0.94591 1.70228 1.22607 1.34777 1.25769 0.85629 0.78593 0.80080 0.77977 1.18826 1.20520 1.20692 0.93425 0.89959 0.92669 0.92256 0.87068 0.82378 0.82339 0.81338 0.91712 0.90993 0.95865 0.92159 0.95807 0.80805 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 8.45 71.98 0.61 -3.49 16 2 C 0.08 2.20 2.32 44.92 0.10 2.31 16 3 H 0.09 2.17 7.90 -2.39 -0.02 2.15 16 4 C -0.04 -1.10 5.14 29.85 0.15 -0.95 16 5 C -0.15 -4.24 5.40 24.59 0.13 -4.11 16 6 C -0.16 -3.96 10.05 21.22 0.21 -3.74 16 7 C -0.13 -3.31 10.18 21.22 0.22 -3.10 16 8 C -0.24 -6.97 11.23 66.72 0.75 -6.22 16 9 S 0.06 2.28 23.33 -56.49 -1.32 0.96 16 10 N -0.54 -18.61 4.25 -897.03 -3.82 -22.43 16 11 C 0.03 0.86 8.78 127.69 1.12 1.98 16 12 C 0.06 2.29 3.31 86.30 0.29 2.57 16 13 C 0.24 12.22 3.02 29.85 0.09 12.31 16 14 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 15 O -0.57 -29.34 9.79 -148.98 -1.46 -30.80 16 16 C -0.58 -32.14 8.76 25.60 0.22 -31.92 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.03 1.63 5.40 84.65 0.46 2.09 16 19 N -0.90 -54.21 12.84 21.45 0.28 -53.94 16 20 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 21 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H 0.05 1.25 6.66 -2.39 -0.02 1.23 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.29 6.99 -2.39 -0.02 1.27 16 27 H 0.06 1.75 6.36 -2.39 -0.02 1.74 16 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 31 H 0.17 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 33 H 0.07 2.85 5.62 -2.39 -0.01 2.84 16 34 H 0.02 0.71 6.97 -2.39 -0.02 0.69 16 35 H 0.06 2.46 6.04 -2.38 -0.01 2.44 16 36 H 0.02 0.94 7.12 -2.39 -0.02 0.93 16 37 H 0.35 16.01 9.04 -74.05 -0.67 15.34 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -65.27 318.38 0.45 -64.82 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.38 Total: 27.75 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.36 Total: -32.26 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -3.54 Total: -76.37 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -1.46 Total: -30.80 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.32 Total: 0.96 kcal Total: -65.27 0.45 -64.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657519031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.784 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds