Wall clock time and date at job start Mon Mar 30 2020 00:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00291 * 2 1 4 4 H 1.09004 * 109.47138 * 29.99347 * 3 2 1 5 5 C 1.53005 * 109.47122 * 270.00006 * 3 2 1 6 6 C 1.52999 * 109.47519 * 149.99859 * 3 2 1 7 7 N 1.46504 * 109.46945 * 300.00145 * 6 3 2 8 8 C 1.39929 * 119.99882 * 180.02562 * 7 6 3 9 9 C 1.38709 * 120.07812 * 359.71984 * 8 7 6 10 10 C 1.38218 * 120.01475 * 179.70430 * 9 8 7 11 11 C 1.38525 * 120.17396 * 0.59623 * 10 9 8 12 12 F 1.35100 * 119.92076 * 179.70347 * 11 10 9 13 13 C 1.38358 * 120.15972 * 359.68042 * 11 10 9 14 14 C 1.38716 * 119.98127 * 0.02562 * 13 11 10 15 15 O 1.35791 * 120.08934 * 180.02562 * 14 13 11 16 16 C 1.34809 * 117.00125 * 354.39820 * 15 14 13 17 17 H 1.08005 * 119.99135 * 5.06344 * 16 15 14 18 18 C 1.38618 * 120.00205 * 185.06691 * 16 15 14 19 19 N 1.31582 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47321 * 89.99797 * 20 18 16 22 22 H 1.48501 * 109.47203 * 209.99765 * 20 18 16 23 23 H 1.48503 * 109.47136 * 329.99948 * 20 18 16 24 24 H 1.08999 * 109.47085 * 300.00307 * 1 2 3 25 25 H 1.09001 * 109.46901 * 60.00173 * 1 2 3 26 26 H 1.09004 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46861 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46728 * 299.99967 * 5 3 2 29 29 H 1.09001 * 109.47048 * 59.99540 * 5 3 2 30 30 H 1.08991 * 109.47382 * 59.99918 * 6 3 2 31 31 H 1.08998 * 109.47146 * 180.02562 * 6 3 2 32 32 H 0.96999 * 119.99830 * 359.97438 * 7 6 3 33 33 H 1.08004 * 119.99426 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.91531 * 180.28449 * 10 9 8 35 35 H 1.08003 * 120.00596 * 180.02562 * 13 11 10 36 36 H 0.96999 * 119.99925 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 7 3.1602 0.8172 2.1025 8 6 4.2564 0.6997 2.9643 9 6 5.5325 0.9996 2.5108 10 6 6.6135 0.8889 3.3649 11 6 6.4284 0.4670 4.6713 12 9 7.4895 0.3549 5.5000 13 6 5.1595 0.1604 5.1296 14 6 4.0691 0.2750 4.2798 15 8 2.8226 -0.0248 4.7274 16 6 2.7256 -0.5382 5.9701 17 1 3.6053 -0.6176 6.5916 18 6 1.4970 -0.9643 6.4501 19 7 0.4252 -0.8671 5.6929 20 14 1.3627 -1.6764 8.1718 21 1 1.0826 -0.5845 9.1387 22 1 0.2588 -2.6688 8.2124 23 1 2.6402 -2.3419 8.5332 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.6607 2.7673 -1.4425 28 1 2.8829 1.0774 -1.9563 29 1 1.2569 1.8014 -1.9564 30 1 4.0242 0.5694 0.2075 31 1 3.8020 2.2591 0.7216 32 1 2.2688 0.6040 2.4198 33 1 5.6809 1.3238 1.4913 34 1 7.6058 1.1273 3.0115 35 1 5.0179 -0.1679 6.1487 36 1 -0.4345 -1.1656 6.0287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658792262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:58 Heat of formation + Delta-G solvation = -93.472925 kcal Electronic energy + Delta-G solvation = -20476.275393 eV Core-core repulsion = 17068.913545 eV Total energy + Delta-G solvation = -3407.361848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.01416 -39.23808 -38.30047 -36.47252 -34.57986 -32.29403 -31.72809 -29.22900 -28.15718 -26.57869 -25.36523 -24.97849 -22.15941 -21.06655 -20.82982 -18.14672 -17.53715 -16.77541 -16.21518 -16.01829 -15.12678 -14.91665 -14.83206 -14.79870 -14.18400 -13.95444 -13.75897 -13.39888 -13.27631 -13.05130 -12.70801 -12.53349 -12.18641 -12.05460 -11.78591 -11.34489 -11.32968 -11.25955 -10.87407 -10.64698 -10.52023 -10.36806 -9.61722 -9.51260 -9.19910 -8.83267 -7.70681 -6.46465 -6.39016 -4.00988 2.16123 2.27697 3.13436 3.15211 3.19740 3.80715 3.94476 4.04088 4.50878 4.84348 5.00269 5.09138 5.12592 5.15115 5.32321 5.35526 5.53040 5.54006 5.62784 5.66191 5.76177 5.86185 5.88056 5.92953 6.06615 6.15399 6.47671 6.62237 6.84957 7.06001 7.13808 7.26492 7.28383 7.65772 7.95082 8.08127 8.47544 9.00507 9.67348 10.71739 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.007059 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.535024 B = 3965.691629 C = 6160.735598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.066 0.934 5 C -0.170 4.170 6 C 0.136 3.864 7 N -0.740 5.740 8 C 0.156 3.844 9 C -0.148 4.148 10 C -0.194 4.194 11 C 0.084 3.916 12 F -0.158 7.158 13 C -0.241 4.241 14 C 0.121 3.879 15 O -0.176 6.176 16 C -0.386 4.386 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 4.435 -10.319 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.015 3.985 4 H 0.084 0.916 5 C -0.228 4.228 6 C 0.011 3.989 7 N -0.374 5.374 8 C 0.054 3.946 9 C -0.173 4.173 10 C -0.214 4.214 11 C 0.063 3.937 12 F -0.137 7.137 13 C -0.262 4.262 14 C 0.066 3.934 15 O -0.080 6.080 16 C -0.462 4.462 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.246 0.754 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.842 4.280 -10.542 11.525 hybrid contribution -0.374 -0.258 1.148 1.235 sum 1.467 4.021 -9.393 10.323 Atomic orbital electron populations 1.22792 0.81086 1.02912 0.99722 1.87992 1.19620 1.26940 1.94962 1.22350 0.95077 0.85553 0.95521 0.91596 1.22208 1.02489 1.01715 0.96419 1.21286 0.95366 0.99190 0.83060 1.44203 1.08098 1.76065 1.09048 1.17112 0.88171 1.01744 0.87553 1.19915 0.89929 1.08058 0.99355 1.20283 0.98876 1.09628 0.92651 1.17222 0.82971 1.05066 0.88436 1.91374 1.55746 1.94465 1.72130 1.20782 0.90752 1.12595 1.02105 1.18592 0.86328 0.97657 0.90825 1.83895 1.20683 1.70720 1.32746 1.21291 0.96023 1.40573 0.88293 0.89131 1.25231 0.94293 0.96946 0.99940 1.70029 0.99206 1.44244 1.36424 0.85723 0.78573 0.78800 0.80442 1.19930 1.20310 1.19160 0.93522 0.94611 0.89631 0.91418 0.91543 0.92277 0.92223 0.91790 0.75374 0.86205 0.86576 0.84484 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.49 16 2 O -0.38 -5.71 10.09 -35.23 -0.36 -6.07 16 3 C 0.07 0.94 2.81 -26.73 -0.08 0.86 16 4 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 5 C -0.17 -1.65 9.53 37.16 0.35 -1.30 16 6 C 0.14 1.95 4.61 -4.04 -0.02 1.93 16 7 N -0.74 -13.99 5.62 -58.46 -0.33 -14.32 16 8 C 0.16 3.25 6.67 -83.52 -0.56 2.69 16 9 C -0.15 -2.70 9.31 -39.41 -0.37 -3.06 16 10 C -0.19 -3.59 10.02 -39.48 -0.40 -3.98 16 11 C 0.08 1.75 7.29 -39.43 -0.29 1.46 16 12 F -0.16 -3.19 17.26 2.25 0.04 -3.15 16 13 C -0.24 -5.53 9.14 -39.36 -0.36 -5.89 16 14 C 0.12 2.92 6.66 -38.94 -0.26 2.66 16 15 O -0.18 -4.85 9.00 -0.02 0.00 -4.85 16 16 C -0.39 -10.67 9.49 30.87 0.29 -10.37 16 17 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.57 13.67 55.48 0.76 -23.82 16 20 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 31 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 32 H 0.41 8.61 7.71 -40.82 -0.31 8.30 16 33 H 0.12 1.80 6.73 -52.48 -0.35 1.45 16 34 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.14 3.18 5.64 -52.48 -0.30 2.88 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 311.97 15.07 4.70 4.70 Total: -1.00 -30.06 311.97 -5.42 -35.47 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.53 Total: 9.03 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.68 Total: -12.53 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.43 Total: -38.14 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.36 Total: -10.92 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.06 -5.42 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658792262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.999 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds