Wall clock time and date at job start Mon Mar 30 2020 00:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00291 * 2 1 4 4 H 1.09004 * 109.47138 * 29.99347 * 3 2 1 5 5 C 1.53005 * 109.47122 * 270.00006 * 3 2 1 6 6 C 1.52999 * 109.47519 * 149.99859 * 3 2 1 7 7 N 1.46504 * 109.46945 * 300.00145 * 6 3 2 8 8 C 1.39929 * 119.99882 * 180.02562 * 7 6 3 9 9 C 1.38709 * 120.07812 * 359.71984 * 8 7 6 10 10 C 1.38218 * 120.01475 * 179.70430 * 9 8 7 11 11 C 1.38525 * 120.17396 * 0.59623 * 10 9 8 12 12 F 1.35100 * 119.92076 * 179.70347 * 11 10 9 13 13 C 1.38358 * 120.15972 * 359.68042 * 11 10 9 14 14 C 1.38716 * 119.98127 * 0.02562 * 13 11 10 15 15 O 1.35791 * 120.08934 * 180.02562 * 14 13 11 16 16 C 1.34809 * 117.00125 * 354.39820 * 15 14 13 17 17 H 1.08005 * 119.99135 * 5.06344 * 16 15 14 18 18 C 1.38618 * 120.00205 * 185.06691 * 16 15 14 19 19 N 1.31582 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99983 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47321 * 89.99797 * 20 18 16 22 22 H 1.48501 * 109.47203 * 209.99765 * 20 18 16 23 23 H 1.48503 * 109.47136 * 329.99948 * 20 18 16 24 24 H 1.08999 * 109.47085 * 300.00307 * 1 2 3 25 25 H 1.09001 * 109.46901 * 60.00173 * 1 2 3 26 26 H 1.09004 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46861 * 179.97438 * 5 3 2 28 28 H 1.08996 * 109.46728 * 299.99967 * 5 3 2 29 29 H 1.09001 * 109.47048 * 59.99540 * 5 3 2 30 30 H 1.08991 * 109.47382 * 59.99918 * 6 3 2 31 31 H 1.08998 * 109.47146 * 180.02562 * 6 3 2 32 32 H 0.96999 * 119.99830 * 359.97438 * 7 6 3 33 33 H 1.08004 * 119.99426 * 359.97438 * 9 8 7 34 34 H 1.07998 * 119.91531 * 180.28449 * 10 9 8 35 35 H 1.08003 * 120.00596 * 180.02562 * 13 11 10 36 36 H 0.96999 * 119.99925 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 7 3.1602 0.8172 2.1025 8 6 4.2564 0.6997 2.9643 9 6 5.5325 0.9996 2.5108 10 6 6.6135 0.8889 3.3649 11 6 6.4284 0.4670 4.6713 12 9 7.4895 0.3549 5.5000 13 6 5.1595 0.1604 5.1296 14 6 4.0691 0.2750 4.2798 15 8 2.8226 -0.0248 4.7274 16 6 2.7256 -0.5382 5.9701 17 1 3.6053 -0.6176 6.5916 18 6 1.4970 -0.9643 6.4501 19 7 0.4252 -0.8671 5.6929 20 14 1.3627 -1.6764 8.1718 21 1 1.0826 -0.5845 9.1387 22 1 0.2588 -2.6688 8.2124 23 1 2.6402 -2.3419 8.5332 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 2.6607 2.7673 -1.4425 28 1 2.8829 1.0774 -1.9563 29 1 1.2569 1.8014 -1.9564 30 1 4.0242 0.5694 0.2075 31 1 3.8020 2.2591 0.7216 32 1 2.2688 0.6040 2.4198 33 1 5.6809 1.3238 1.4913 34 1 7.6058 1.1273 3.0115 35 1 5.0179 -0.1679 6.1487 36 1 -0.4345 -1.1656 6.0287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658792262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:58 Heat of formation + Delta-G solvation = -113.370925 kcal Electronic energy + Delta-G solvation = -20477.138235 eV Core-core repulsion = 17068.913545 eV Total energy + Delta-G solvation = -3408.224690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.62784 -40.89916 -39.46356 -38.16635 -35.99221 -34.26328 -32.85486 -30.91579 -29.56993 -27.62370 -27.30617 -26.23143 -23.68083 -22.61591 -22.09705 -19.99634 -19.27102 -17.87983 -17.67689 -17.47969 -16.92615 -16.44819 -16.22146 -16.00018 -15.89081 -15.48953 -15.24603 -15.08737 -14.74921 -14.51124 -13.86230 -13.63995 -13.59108 -13.33846 -13.22696 -12.91954 -12.80976 -12.44773 -12.33615 -12.18567 -12.02517 -11.66144 -11.49227 -10.79404 -10.71358 -10.57638 -9.42282 -8.46120 -8.00308 -6.08506 0.50126 0.63142 1.34981 1.42541 1.50816 2.16589 2.59423 2.78526 2.84500 3.11475 3.35784 3.65760 3.84419 4.02542 4.12449 4.20476 4.28734 4.43636 4.52008 4.53829 4.63573 4.72060 4.80323 4.85375 4.89987 4.99358 5.03773 5.12436 5.30595 5.34701 5.45185 5.48034 5.97431 6.06080 6.26597 6.57827 6.82400 6.99441 7.76797 8.75802 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.007059 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.535024 B = 3965.691629 C = 6160.735598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.070 3.930 4 H 0.063 0.937 5 C -0.161 4.161 6 C 0.130 3.870 7 N -0.744 5.744 8 C 0.152 3.848 9 C -0.137 4.137 10 C -0.162 4.162 11 C 0.063 3.937 12 F -0.155 7.155 13 C -0.247 4.247 14 C 0.078 3.922 15 O -0.217 6.217 16 C -0.410 4.410 17 H 0.092 0.908 18 C -0.016 4.016 19 N -0.911 5.911 20 Si 1.011 2.989 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.260 1.260 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.395 0.605 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 5.378 -11.996 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.012 3.988 4 H 0.081 0.919 5 C -0.219 4.219 6 C 0.007 3.993 7 N -0.375 5.375 8 C 0.049 3.951 9 C -0.161 4.161 10 C -0.182 4.182 11 C 0.042 3.958 12 F -0.134 7.134 13 C -0.268 4.268 14 C 0.025 3.975 15 O -0.123 6.123 16 C -0.486 4.486 17 H 0.110 0.890 18 C -0.214 4.214 19 N -0.549 5.549 20 Si 0.831 3.169 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.184 1.184 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.229 0.771 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.139 0.861 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.661 5.251 -12.266 13.836 hybrid contribution -0.714 -0.452 1.477 1.701 sum 2.947 4.800 -10.789 12.171 Atomic orbital electron populations 1.22862 0.80164 1.03249 1.00375 1.87937 1.20823 1.28592 1.95234 1.22500 0.94129 0.84694 0.97477 0.91922 1.22147 1.03253 1.02682 0.93809 1.21642 0.96731 1.00449 0.80517 1.44477 1.06926 1.75520 1.10614 1.17481 0.89939 1.00882 0.86779 1.20404 0.88257 1.06234 1.01165 1.20805 1.00861 1.05530 0.91017 1.17329 0.82210 1.06596 0.89714 1.91378 1.55200 1.94570 1.72293 1.20844 0.91960 1.12507 1.01503 1.19091 0.85799 0.99836 0.92726 1.83863 1.22580 1.73012 1.32879 1.21666 0.96595 1.41309 0.89018 0.89028 1.26371 0.93622 0.97136 1.04262 1.70153 0.99798 1.46320 1.38667 0.84686 0.78845 0.78251 0.75084 1.18884 1.19419 1.18401 0.94917 0.91817 0.89597 0.89314 0.91391 0.91446 0.91522 0.89086 0.77125 0.81870 0.82401 0.86088 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.82 113.37 1.23 1.97 16 2 O -0.41 -12.17 10.09 -148.98 -1.50 -13.67 16 3 C 0.07 1.68 2.81 30.60 0.09 1.76 16 4 H 0.06 1.53 7.79 -2.38 -0.02 1.51 16 5 C -0.16 -2.63 9.53 71.98 0.69 -1.94 16 6 C 0.13 3.41 4.61 86.38 0.40 3.81 16 7 N -0.74 -27.91 5.62 -338.87 -1.91 -29.81 16 8 C 0.15 6.25 6.67 38.26 0.26 6.50 16 9 C -0.14 -4.47 9.31 22.38 0.21 -4.26 16 10 C -0.16 -5.36 10.02 22.33 0.22 -5.14 16 11 C 0.06 2.52 7.29 22.37 0.16 2.68 16 12 F -0.16 -6.02 17.26 44.97 0.78 -5.24 16 13 C -0.25 -11.59 9.14 22.41 0.20 -11.39 16 14 C 0.08 3.89 6.66 22.69 0.15 4.04 16 15 O -0.22 -12.63 9.00 -22.98 -0.21 -12.84 16 16 C -0.41 -23.90 9.49 67.91 0.64 -23.26 16 17 H 0.09 5.09 5.21 -2.91 -0.02 5.07 16 18 C -0.02 -0.89 5.49 84.82 0.47 -0.42 16 19 N -0.91 -54.39 13.67 21.61 0.30 -54.10 16 20 Si 1.01 43.41 29.55 68.60 2.03 45.43 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 25 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 30 H 0.07 1.68 7.94 -2.39 -0.02 1.66 16 31 H 0.09 1.92 7.96 -2.39 -0.02 1.90 16 32 H 0.40 17.27 7.71 -92.71 -0.72 16.55 16 33 H 0.16 3.94 6.73 -2.91 -0.02 3.92 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.12 5.92 5.64 -2.91 -0.02 5.91 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -68.99 311.97 4.58 -64.41 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.39 Total: 31.46 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.71 Total: -25.64 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.61 Total: -83.91 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.71 Total: -26.51 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.99 4.58 -64.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658792262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.963 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds