Wall clock time and date at job start Mon Mar 30 2020 00:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00189 * 2 1 4 4 H 1.09004 * 109.47303 * 330.00240 * 3 2 1 5 5 C 1.52996 * 109.47070 * 90.00027 * 3 2 1 6 6 C 1.53001 * 109.47322 * 210.00024 * 3 2 1 7 7 N 1.46504 * 109.47132 * 64.99880 * 6 3 2 8 8 C 1.39923 * 120.00334 * 180.27294 * 7 6 3 9 9 C 1.38723 * 120.07488 * 359.45227 * 8 7 6 10 10 C 1.38217 * 120.01188 * 179.74609 * 9 8 7 11 11 C 1.38529 * 120.17410 * 0.54956 * 10 9 8 12 12 F 1.35106 * 119.91697 * 179.72582 * 11 10 9 13 13 C 1.38348 * 120.16484 * 359.70457 * 11 10 9 14 14 C 1.38727 * 119.98040 * 0.02562 * 13 11 10 15 15 O 1.35790 * 120.09112 * 179.97438 * 14 13 11 16 16 C 1.34804 * 116.99743 * 354.39797 * 15 14 13 17 17 H 1.08000 * 120.00078 * 5.06493 * 16 15 14 18 18 C 1.38627 * 119.99810 * 185.06426 * 16 15 14 19 19 N 1.31586 * 119.99922 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00341 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47183 * 90.00243 * 20 18 16 22 22 H 1.48494 * 109.47436 * 210.00261 * 20 18 16 23 23 H 1.48505 * 109.46821 * 330.00160 * 20 18 16 24 24 H 1.08997 * 109.47330 * 59.99697 * 1 2 3 25 25 H 1.08995 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47123 * 299.99986 * 1 2 3 27 27 H 1.09003 * 109.47557 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47648 * 300.00046 * 5 3 2 29 29 H 1.08996 * 109.47075 * 60.00250 * 5 3 2 30 30 H 1.09000 * 109.47074 * 304.99967 * 6 3 2 31 31 H 1.08996 * 109.47194 * 184.99892 * 6 3 2 32 32 H 0.97001 * 119.99676 * 0.02562 * 7 6 3 33 33 H 1.07997 * 119.99329 * 359.97438 * 9 8 7 34 34 H 1.08001 * 119.90637 * 180.27963 * 10 9 8 35 35 H 1.07993 * 120.01179 * 180.02562 * 13 11 10 36 36 H 0.96994 * 119.99836 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7213 7 7 3.1477 0.9330 -2.1329 8 6 4.2420 0.8308 -2.9989 9 6 5.5267 1.0530 -2.5250 10 6 6.6071 0.9466 -3.3804 11 6 6.4104 0.6293 -4.7144 12 9 7.4699 0.5321 -5.5472 13 6 5.1319 0.4114 -5.1960 14 6 4.0432 0.5110 -4.3420 15 8 2.7872 0.2981 -4.8124 16 6 2.6552 0.1083 -6.1405 17 1 3.5326 0.0481 -6.7673 18 6 1.3931 -0.0096 -6.7016 19 7 1.2641 -0.1954 -7.9979 20 14 -0.1246 0.0938 -5.6175 21 1 -0.5704 1.5072 -5.5234 22 1 -1.2108 -0.7297 -6.2066 23 1 0.2010 -0.4140 -4.2605 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.6615 2.7669 1.4426 28 1 1.2569 1.8014 1.9564 29 1 2.8829 1.0774 1.9562 30 1 3.9931 0.5051 -0.2617 31 1 3.8427 2.2369 -0.6443 32 1 2.2495 0.7817 -2.4664 33 1 5.6830 1.3056 -1.4867 34 1 7.6070 1.1155 -3.0086 35 1 4.9814 0.1638 -6.2363 36 1 0.3811 -0.2782 -8.3905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658792265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:00 Heat of formation + Delta-G solvation = -111.240626 kcal Electronic energy + Delta-G solvation = -20557.080772 eV Core-core repulsion = 17148.948459 eV Total energy + Delta-G solvation = -3408.132313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.66160 -41.03823 -39.49886 -38.30044 -36.06629 -34.44915 -32.87916 -31.09134 -29.67104 -27.64978 -27.24303 -26.28222 -23.58756 -22.73616 -22.09978 -20.01037 -19.46796 -17.95621 -17.69413 -17.53318 -17.07036 -16.51048 -16.20621 -16.03667 -15.82229 -15.63333 -15.27945 -15.15405 -14.77725 -14.55329 -14.16816 -13.75103 -13.64831 -13.36260 -13.32527 -12.97388 -12.83607 -12.47511 -12.35277 -12.15190 -12.12590 -11.66696 -11.55242 -10.91877 -10.76317 -10.60022 -9.51035 -8.49718 -8.08244 -6.19177 0.44404 0.56066 1.28988 1.34013 1.49615 2.26360 2.52043 2.71550 2.81418 2.95615 3.06996 3.57975 3.82710 3.97784 4.11765 4.19387 4.26477 4.43359 4.45667 4.51595 4.60924 4.70840 4.76490 4.81298 4.89167 4.99634 5.02045 5.20636 5.31281 5.33426 5.41427 5.59792 5.86651 6.04806 6.24964 6.50709 6.76612 6.84001 7.55372 8.62387 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.008328 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.449315 B = 3361.398597 C = 5701.090928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.068 3.932 4 H 0.066 0.934 5 C -0.162 4.162 6 C 0.128 3.872 7 N -0.746 5.746 8 C 0.162 3.838 9 C -0.133 4.133 10 C -0.153 4.153 11 C 0.059 3.941 12 F -0.157 7.157 13 C -0.238 4.238 14 C 0.084 3.916 15 O -0.234 6.234 16 C -0.394 4.394 17 H 0.074 0.926 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.973 3.027 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.255 1.255 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.395 0.605 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.112 0.888 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 5.054 20.410 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.011 3.989 4 H 0.084 0.916 5 C -0.220 4.220 6 C 0.005 3.995 7 N -0.377 5.377 8 C 0.059 3.941 9 C -0.156 4.156 10 C -0.172 4.172 11 C 0.038 3.962 12 F -0.136 7.136 13 C -0.259 4.259 14 C 0.033 3.967 15 O -0.142 6.142 16 C -0.470 4.470 17 H 0.091 0.909 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.179 1.179 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.228 0.772 33 H 0.187 0.813 34 H 0.179 0.821 35 H 0.130 0.870 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.123 4.894 20.524 21.129 hybrid contribution -0.912 -0.189 -1.237 1.548 sum 0.212 4.705 19.286 19.853 Atomic orbital electron populations 1.22918 0.80190 1.03462 1.00546 1.87943 1.20804 1.28535 1.95263 1.22510 0.94223 0.84735 0.97465 0.91635 1.22145 1.03244 1.02686 0.93937 1.21672 0.96762 1.01690 0.79356 1.44478 1.06086 1.79157 1.07974 1.17365 0.90037 1.00560 0.86169 1.20466 0.87918 1.06058 1.01182 1.20880 1.01185 1.05037 0.90113 1.17388 0.82017 1.07438 0.89349 1.91386 1.55365 1.94552 1.72281 1.20905 0.92118 1.11810 1.01046 1.18766 0.84600 1.00907 0.92471 1.83427 1.24083 1.82104 1.24550 1.20615 0.95521 1.50851 0.80057 0.90879 1.25301 1.01130 0.95663 0.96939 1.69757 1.26054 1.49402 1.11480 0.85190 0.77126 0.79032 0.79222 1.18910 1.19655 1.17926 0.94607 0.89268 0.91988 0.89446 0.91512 0.91340 0.91220 0.88785 0.77154 0.81274 0.82108 0.86990 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 113.37 1.23 1.73 16 2 O -0.41 -10.13 10.29 -148.98 -1.53 -11.66 16 3 C 0.07 1.36 2.75 30.59 0.08 1.44 16 4 H 0.07 1.30 7.79 -2.38 -0.02 1.28 16 5 C -0.16 -2.14 9.53 71.98 0.69 -1.46 16 6 C 0.13 2.81 4.58 86.38 0.40 3.21 16 7 N -0.75 -24.04 5.68 -338.85 -1.92 -25.97 16 8 C 0.16 5.98 6.67 38.27 0.26 6.23 16 9 C -0.13 -3.92 9.31 22.38 0.21 -3.71 16 10 C -0.15 -4.75 10.02 22.33 0.22 -4.53 16 11 C 0.06 2.36 7.29 22.37 0.16 2.52 16 12 F -0.16 -6.21 17.26 44.97 0.78 -5.43 16 13 C -0.24 -11.20 9.14 22.41 0.20 -11.00 16 14 C 0.08 3.94 6.67 22.69 0.15 4.09 16 15 O -0.23 -12.41 7.83 -22.92 -0.18 -12.59 16 16 C -0.39 -23.37 9.94 67.91 0.68 -22.70 16 17 H 0.07 4.66 5.44 -2.91 -0.02 4.65 16 18 C 0.01 0.44 5.49 84.82 0.47 0.90 16 19 N -0.93 -55.96 13.96 21.61 0.30 -55.66 16 20 Si 0.97 44.55 28.62 68.60 1.96 46.51 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H 0.04 0.75 8.08 -2.39 -0.02 0.73 16 25 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 0.92 7.87 -2.39 -0.02 0.90 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.80 7.87 -2.39 -0.02 0.79 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.48 7.96 -2.39 -0.02 1.46 16 31 H 0.09 1.60 7.94 -2.39 -0.02 1.58 16 32 H 0.40 14.30 7.84 -92.71 -0.73 13.57 16 33 H 0.17 3.47 6.73 -2.91 -0.02 3.45 16 34 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.11 5.91 5.64 -2.91 -0.02 5.89 16 36 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -68.79 311.15 4.52 -64.27 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.38 Total: 23.77 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.74 Total: -23.26 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.62 Total: -81.63 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.71 Total: -24.25 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.78 Total: -5.43 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.96 Total: 46.51 kcal Total: -68.79 4.52 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658792265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.968 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds