Wall clock time and date at job start Mon Mar 30 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 117.00065 * 2 1 4 4 N 1.30552 * 125.44629 * 180.29623 * 3 2 1 5 5 C 1.36333 * 108.38291 * 180.16231 * 4 3 2 6 6 C 1.47365 * 126.41709 * 179.82778 * 5 4 3 7 7 O 1.21618 * 120.00306 * 179.68955 * 6 5 4 8 8 N 1.34779 * 119.99644 * 359.68121 * 6 5 4 9 9 C 1.46496 * 119.99965 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.52999 * 109.47487 * 205.00106 * 9 8 6 13 13 N 1.46504 * 109.46795 * 55.00145 * 12 9 8 14 14 C 1.36940 * 120.00178 * 179.97438 * 13 12 9 15 15 H 1.07997 * 119.99711 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00136 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00144 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47337 * 89.99637 * 18 16 14 20 20 H 1.48496 * 109.47220 * 209.99834 * 18 16 14 21 21 H 1.48503 * 109.46753 * 329.99410 * 18 16 14 22 22 C 1.35920 * 107.17261 * 359.55839 * 5 4 3 23 23 O 1.34200 * 125.44438 * 359.96895 * 3 2 1 24 24 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47611 * 300.00532 * 1 2 3 26 26 H 1.09005 * 109.46813 * 60.00501 * 1 2 3 27 27 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 29 29 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 30 30 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.47756 * 174.99813 * 12 9 8 32 32 H 1.09001 * 109.47317 * 295.00696 * 12 9 8 33 33 H 0.97002 * 120.00414 * 359.97438 * 13 12 9 34 34 H 0.97000 * 120.00036 * 180.02562 * 17 16 14 35 35 H 1.08005 * 126.45742 * 180.29750 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 -0.0055 5 6 3.5701 2.7406 0.0002 6 6 4.8892 3.3976 0.0006 7 8 4.9639 4.6115 0.0003 8 7 6.0127 2.6533 0.0013 9 6 7.3241 3.3064 0.0022 10 1 7.2744 4.2220 -0.5871 11 6 7.7236 3.6461 1.4395 12 6 8.3639 2.3636 -0.6068 13 7 7.9214 1.9436 -1.9387 14 6 8.6963 1.0928 -2.6810 15 1 9.6334 0.7312 -2.2843 16 6 8.2769 0.6944 -3.9427 17 7 9.0214 -0.1237 -4.6560 18 14 6.6556 1.3193 -4.6286 19 1 6.8880 2.5810 -5.3765 20 1 6.0795 0.3009 -5.5430 21 1 5.7105 1.5728 -3.5116 22 6 2.3602 3.3600 -0.0005 23 8 1.4226 2.3958 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 5.9531 1.6851 0.0012 28 1 6.9829 4.3178 1.8734 29 1 7.7733 2.7306 2.0288 30 1 8.6995 4.1317 1.4403 31 1 9.3199 2.8807 -0.6879 32 1 8.4777 1.4873 0.0313 33 1 7.0795 2.2681 -2.2950 34 1 8.7285 -0.4018 -5.5378 35 1 2.1848 4.4257 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699413341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:07 Heat of formation + Delta-G solvation = -26.393188 kcal Electronic energy + Delta-G solvation = -20484.963657 eV Core-core repulsion = 17100.430566 eV Total energy + Delta-G solvation = -3384.533091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.60912 -39.60343 -38.99098 -36.34198 -35.08491 -33.69254 -31.46241 -30.53141 -29.92244 -27.74639 -25.96993 -24.55803 -22.70014 -22.11638 -21.09331 -20.29409 -19.15732 -17.73335 -17.70158 -17.23458 -16.57890 -15.90394 -15.56786 -15.45887 -14.82314 -14.49695 -14.11730 -13.83162 -13.67850 -12.83725 -12.66311 -12.58759 -12.36725 -12.28513 -12.21150 -11.83461 -11.22987 -11.05144 -10.89563 -10.84570 -10.48534 -10.13546 -10.05424 -9.57673 -8.98829 -8.89107 -8.74863 -7.22493 -5.74735 -3.10470 0.97337 1.70522 1.94126 2.53897 3.24188 3.35709 3.41803 3.46998 3.48599 4.38554 4.52924 4.62164 4.62759 4.72251 4.90537 5.06384 5.13061 5.31899 5.35723 5.52387 5.60199 5.62650 5.86269 5.94344 6.06015 6.32608 6.38222 6.41195 6.61356 6.80401 7.31987 7.75077 8.00515 8.29728 8.44089 9.22860 9.95462 10.14565 11.43491 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.006139 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.224087 B = 4559.638948 C = 5799.989756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.243 6.243 3 C 0.379 3.621 4 N -0.449 5.449 5 C -0.042 4.042 6 C 0.601 3.399 7 O -0.542 6.542 8 N -0.693 5.693 9 C 0.127 3.873 10 H 0.090 0.910 11 C -0.157 4.157 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.245 4.245 15 H 0.092 0.908 16 C 0.008 3.992 17 N -0.933 5.933 18 Si 0.881 3.119 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.276 1.276 22 C -0.002 4.002 23 O -0.227 6.227 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.415 0.585 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.363 0.637 34 H 0.259 0.741 35 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 4.999 13.256 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.150 6.150 3 C 0.133 3.867 4 N -0.194 5.194 5 C -0.161 4.161 6 C 0.386 3.614 7 O -0.420 6.420 8 N -0.344 5.344 9 C 0.023 3.977 10 H 0.108 0.892 11 C -0.216 4.216 12 C 0.021 3.979 13 N -0.402 5.402 14 C -0.375 4.375 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.581 5.581 18 Si 0.711 3.289 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.202 1.202 22 C -0.075 4.075 23 O -0.118 6.118 24 H 0.137 0.863 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.251 0.749 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.124 4.955 13.177 22.168 hybrid contribution -2.001 0.347 -0.717 2.153 sum -19.125 5.302 12.460 23.434 Atomic orbital electron populations 1.23296 0.75233 1.05657 1.02902 1.86413 1.23551 1.15794 1.89275 1.23388 0.85633 0.79526 0.98180 1.71174 1.09673 1.15695 1.22878 1.21781 0.96046 0.88384 1.09914 1.16654 0.82064 0.85979 0.76692 1.90805 1.86784 1.12628 1.51816 1.45926 1.05045 1.11374 1.72024 1.21423 0.81724 0.97512 0.97019 0.89184 1.22092 1.01778 1.01810 0.95899 1.20976 0.94577 0.95231 0.87099 1.42711 1.24285 1.57670 1.15489 1.19044 1.02393 1.19148 0.96872 0.89057 1.24630 0.97960 0.99309 0.96886 1.69699 1.38287 1.37776 1.12325 0.86595 0.85096 0.78286 0.78939 1.21132 1.21712 1.20221 1.24933 0.84934 0.93726 1.03879 1.84372 1.39562 1.15883 1.72011 0.86291 0.91476 0.91418 0.74859 0.92317 0.92264 0.91263 0.93742 0.94790 0.80414 0.93069 0.74768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.73 101.05 1.08 1.23 16 2 O -0.24 -2.77 10.55 -40.98 -0.43 -3.20 16 3 C 0.38 5.09 8.98 52.22 0.47 5.56 16 4 N -0.45 -7.24 11.10 -11.71 -0.13 -7.37 16 5 C -0.04 -0.64 6.99 -82.98 -0.58 -1.22 16 6 C 0.60 10.18 7.78 -12.55 -0.10 10.08 16 7 O -0.54 -9.86 16.55 5.26 0.09 -9.77 16 8 N -0.69 -11.77 4.51 -54.90 -0.25 -12.02 16 9 C 0.13 2.10 2.73 -67.93 -0.19 1.91 16 10 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 11 C -0.16 -2.08 9.48 37.16 0.35 -1.72 16 12 C 0.15 2.85 5.82 -4.04 -0.02 2.83 16 13 N -0.76 -18.33 5.24 -59.91 -0.31 -18.64 16 14 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 15 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 18 Si 0.88 23.11 27.74 -169.99 -4.71 18.40 16 19 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 22 C 0.00 -0.03 11.93 29.90 0.36 0.33 16 23 O -0.23 -2.59 10.20 -17.76 -0.18 -2.77 16 24 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.41 7.23 8.33 -40.82 -0.34 6.89 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.36 8.90 5.20 -40.82 -0.21 8.68 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.24 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -35.35 311.67 -3.68 -39.03 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.34 Total: 8.72 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 1.12 Total: 11.93 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: 0.08 Total: -67.03 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.53 Total: -15.75 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.35 -3.68 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699413341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.640 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds