Wall clock time and date at job start Mon Mar 30 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35351 * 117.00065 * 2 1 4 4 N 1.30552 * 125.44629 * 180.29623 * 3 2 1 5 5 C 1.36333 * 108.38291 * 180.16231 * 4 3 2 6 6 C 1.47365 * 126.41709 * 179.82778 * 5 4 3 7 7 O 1.21618 * 120.00306 * 179.68955 * 6 5 4 8 8 N 1.34779 * 119.99644 * 359.68121 * 6 5 4 9 9 C 1.46496 * 119.99965 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.52999 * 109.47487 * 205.00106 * 9 8 6 13 13 N 1.46504 * 109.46795 * 55.00145 * 12 9 8 14 14 C 1.36940 * 120.00178 * 179.97438 * 13 12 9 15 15 H 1.07997 * 119.99711 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00136 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00144 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47337 * 89.99637 * 18 16 14 20 20 H 1.48496 * 109.47220 * 209.99834 * 18 16 14 21 21 H 1.48503 * 109.46753 * 329.99410 * 18 16 14 22 22 C 1.35920 * 107.17261 * 359.55839 * 5 4 3 23 23 O 1.34200 * 125.44438 * 359.96895 * 3 2 1 24 24 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47611 * 300.00532 * 1 2 3 26 26 H 1.09005 * 109.46813 * 60.00501 * 1 2 3 27 27 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 29 29 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 30 30 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.47756 * 174.99813 * 12 9 8 32 32 H 1.09001 * 109.47317 * 295.00696 * 12 9 8 33 33 H 0.97002 * 120.00414 * 359.97438 * 13 12 9 34 34 H 0.97000 * 120.00036 * 180.02562 * 17 16 14 35 35 H 1.08005 * 126.45742 * 180.29750 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3348 1.3977 -0.0055 5 6 3.5701 2.7406 0.0002 6 6 4.8892 3.3976 0.0006 7 8 4.9639 4.6115 0.0003 8 7 6.0127 2.6533 0.0013 9 6 7.3241 3.3064 0.0022 10 1 7.2744 4.2220 -0.5871 11 6 7.7236 3.6461 1.4395 12 6 8.3639 2.3636 -0.6068 13 7 7.9214 1.9436 -1.9387 14 6 8.6963 1.0928 -2.6810 15 1 9.6334 0.7312 -2.2843 16 6 8.2769 0.6944 -3.9427 17 7 9.0214 -0.1237 -4.6560 18 14 6.6556 1.3193 -4.6286 19 1 6.8880 2.5810 -5.3765 20 1 6.0795 0.3009 -5.5430 21 1 5.7105 1.5728 -3.5116 22 6 2.3602 3.3600 -0.0005 23 8 1.4226 2.3958 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 5.9531 1.6851 0.0012 28 1 6.9829 4.3178 1.8734 29 1 7.7733 2.7306 2.0288 30 1 8.6995 4.1317 1.4403 31 1 9.3199 2.8807 -0.6879 32 1 8.4777 1.4873 0.0313 33 1 7.0795 2.2681 -2.2950 34 1 8.7285 -0.4018 -5.5378 35 1 2.1848 4.4257 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699413341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:07 Heat of formation + Delta-G solvation = -57.311763 kcal Electronic energy + Delta-G solvation = -20486.304387 eV Core-core repulsion = 17100.430566 eV Total energy + Delta-G solvation = -3385.873821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.57841 -40.85413 -39.80972 -37.85974 -36.11803 -35.53593 -33.33106 -31.96794 -30.99073 -28.33294 -27.64632 -25.71424 -24.10495 -23.58221 -22.34086 -21.57616 -20.28421 -19.62302 -18.62328 -18.44621 -17.44913 -17.25504 -16.72846 -16.41387 -16.25408 -15.84027 -15.80102 -15.14836 -14.85985 -14.64996 -14.19758 -13.90192 -13.71739 -13.24523 -13.12331 -12.98755 -12.91572 -12.64372 -12.24397 -12.11811 -11.94570 -11.89737 -11.75653 -11.38378 -11.03807 -10.21634 -9.78806 -9.33298 -8.05706 -5.38156 -0.01595 0.82458 0.88020 1.32956 1.33894 1.40883 1.69172 2.06965 2.16689 2.43440 3.25926 3.31315 3.57786 3.71792 3.89755 4.09988 4.18673 4.22806 4.26375 4.37532 4.41528 4.61915 4.64844 4.80107 4.83896 4.92888 5.08207 5.30823 5.45740 5.57040 5.73989 6.18419 6.26773 6.53784 7.01611 7.04499 7.80338 7.97713 9.15753 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.006139 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.224087 B = 4559.638948 C = 5799.989756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.258 6.258 3 C 0.381 3.619 4 N -0.490 5.490 5 C -0.082 4.082 6 C 0.602 3.398 7 O -0.560 6.560 8 N -0.699 5.699 9 C 0.135 3.865 10 H 0.079 0.921 11 C -0.147 4.147 12 C 0.146 3.854 13 N -0.759 5.759 14 C -0.230 4.230 15 H 0.066 0.934 16 C -0.055 4.055 17 N -0.979 5.979 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.265 1.265 22 C 0.032 3.968 23 O -0.213 6.213 24 H 0.145 0.855 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.411 0.589 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.363 0.637 34 H 0.258 0.742 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.091 6.130 14.287 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.167 6.167 3 C 0.134 3.866 4 N -0.236 5.236 5 C -0.200 4.200 6 C 0.388 3.612 7 O -0.440 6.440 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.097 0.903 11 C -0.205 4.205 12 C 0.020 3.980 13 N -0.405 5.405 14 C -0.361 4.361 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.630 5.630 18 Si 0.774 3.226 19 H -0.207 1.207 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.041 4.041 23 O -0.103 6.103 24 H 0.163 0.837 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.247 0.753 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.195 0.805 34 H 0.067 0.933 35 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -19.390 6.105 14.257 24.829 hybrid contribution -1.328 -0.033 -0.948 1.632 sum -20.718 6.071 13.309 25.362 Atomic orbital electron populations 1.23719 0.72498 1.07783 1.04000 1.86433 1.26311 1.14923 1.88989 1.23420 0.85427 0.80421 0.97289 1.71045 1.11451 1.16487 1.24631 1.21642 0.96261 0.88674 1.13456 1.16848 0.82596 0.85803 0.75982 1.90780 1.87205 1.13200 1.52865 1.45978 1.05377 1.11202 1.72305 1.21334 0.80991 0.95952 0.98673 0.90267 1.22014 1.02642 1.02398 0.93474 1.21167 0.95829 0.96103 0.84877 1.42740 1.23777 1.56964 1.17000 1.19073 1.01607 1.18487 0.96950 0.91577 1.25338 1.01512 1.00284 0.97599 1.69851 1.40399 1.39887 1.12841 0.85546 0.81191 0.77557 0.78297 1.20650 1.21946 1.19052 1.25618 0.83739 0.94822 0.99873 1.84419 1.38993 1.15394 1.71540 0.83725 0.90030 0.90639 0.75281 0.92252 0.91372 0.89458 0.92900 0.94114 0.80453 0.93299 0.71230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 10.73 113.37 1.22 1.34 16 2 O -0.26 -5.50 10.55 -64.20 -0.68 -6.18 16 3 C 0.38 9.65 8.98 130.43 1.17 10.82 16 4 N -0.49 -15.39 11.10 -419.39 -4.65 -20.04 16 5 C -0.08 -2.40 6.99 40.31 0.28 -2.12 16 6 C 0.60 19.69 7.78 86.65 0.67 20.36 16 7 O -0.56 -19.59 16.55 -4.09 -0.07 -19.66 16 8 N -0.70 -23.13 4.51 -445.85 -2.01 -25.14 16 9 C 0.13 4.26 2.73 44.99 0.12 4.38 16 10 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 11 C -0.15 -3.57 9.48 71.98 0.68 -2.89 16 12 C 0.15 5.47 5.82 86.38 0.50 5.97 16 13 N -0.76 -36.41 5.24 -343.46 -1.80 -38.20 16 14 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 15 H 0.07 4.11 8.06 -2.91 -0.02 4.08 16 16 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 17 N -0.98 -63.68 13.97 21.65 0.30 -63.37 16 18 Si 0.95 48.09 27.74 68.60 1.90 49.99 16 19 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 21 H -0.27 -12.84 6.52 99.48 0.65 -12.19 16 22 C 0.03 0.67 11.93 67.28 0.80 1.47 16 23 O -0.21 -4.30 10.20 18.86 0.19 -4.11 16 24 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.41 14.18 8.33 -92.71 -0.77 13.41 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.36 17.42 5.20 -92.71 -0.48 16.94 16 34 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.27 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -76.63 311.67 -0.19 -76.82 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.18 Total: 25.89 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 6.80 Total: 24.00 kcal Atomic # 7 Polarization: -138.59 SS G_CDS: -8.16 Total: -146.76 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.55 Total: -29.95 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.90 Total: 49.99 kcal Total: -76.63 -0.19 -76.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699413341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.512 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds