Wall clock time and date at job start Mon Mar 30 2020 00:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35733 * 117.00128 * 2 1 4 4 C 1.41852 * 126.79015 * 179.70739 * 3 2 1 5 5 C 1.36658 * 103.81624 * 180.26165 * 4 3 2 6 6 C 1.47539 * 126.88463 * 180.02562 * 5 4 3 7 7 O 1.21583 * 119.99375 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00387 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47350 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46852 * 295.00480 * 10 9 8 12 12 C 1.52997 * 109.47262 * 175.00009 * 10 9 8 13 13 N 1.46507 * 109.47074 * 54.99713 * 10 9 8 14 14 C 1.36931 * 119.99875 * 204.99978 * 13 10 9 15 15 H 1.08001 * 120.00177 * 0.02562 * 14 13 10 16 16 C 1.38810 * 119.99856 * 180.02562 * 14 13 10 17 17 N 1.31620 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00154 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46858 * 60.00019 * 18 16 14 20 20 H 1.48495 * 109.47285 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00491 * 18 16 14 22 22 O 1.34661 * 106.23870 * 0.02562 * 5 4 3 23 23 N 1.20874 * 111.63599 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.47239 * 299.99875 * 1 2 3 25 25 H 1.08996 * 109.47102 * 59.99953 * 1 2 3 26 26 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.08005 * 128.08708 * 0.26669 * 4 3 2 28 28 H 0.97003 * 120.00369 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47194 * 300.00291 * 9 8 6 30 30 H 1.08996 * 109.46996 * 59.99998 * 9 8 6 31 31 H 1.08999 * 109.47075 * 299.99955 * 12 10 9 32 32 H 1.09004 * 109.47201 * 59.99787 * 12 10 9 33 33 H 1.09002 * 109.46829 * 179.97438 * 12 10 9 34 34 H 0.96995 * 119.99919 * 25.00538 * 13 10 9 35 35 H 0.97000 * 120.00431 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4506 0.0058 5 6 3.5390 2.8138 0.0091 6 6 4.7784 3.6142 0.0150 7 8 5.8603 3.0595 0.0169 8 7 4.7113 4.9602 0.0173 9 6 5.9419 5.7551 0.0237 10 6 5.5878 7.2435 0.0257 11 1 5.0846 7.4985 -0.9070 12 6 6.8672 8.0720 0.1581 13 7 4.6997 7.5327 1.1544 14 6 3.8529 8.6075 1.1014 15 1 3.8394 9.2417 0.2274 16 6 3.0118 8.8817 2.1711 17 7 3.0286 8.1091 3.2365 18 14 1.8571 10.3484 2.0992 19 1 0.9333 10.1949 0.9466 20 1 1.0717 10.4222 3.3573 21 1 2.6487 11.5942 1.9365 22 8 2.2758 3.2802 0.0060 23 7 1.4685 2.3805 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.2442 0.7261 0.0072 28 1 3.8481 5.4029 0.0154 29 1 6.5224 5.5189 0.9155 30 1 6.5295 5.5222 -0.8643 31 1 7.3703 7.8170 1.0908 32 1 7.5280 7.8568 -0.6817 33 1 6.6149 9.1324 0.1590 34 1 4.7116 6.9629 1.9393 35 1 2.4406 8.3005 3.9838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713305646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:11 Heat of formation + Delta-G solvation = 6.444522 kcal Electronic energy + Delta-G solvation = -20226.597842 eV Core-core repulsion = 16843.488701 eV Total energy + Delta-G solvation = -3383.109141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.99438 -39.50314 -39.00312 -36.45337 -33.80683 -33.22110 -32.20730 -31.49874 -28.77921 -27.85198 -26.35964 -23.89866 -23.41340 -23.08263 -20.73360 -20.27148 -18.78881 -17.96919 -17.35135 -16.92183 -16.16722 -15.87878 -15.72115 -15.27455 -14.97996 -14.54770 -13.99700 -13.81858 -13.58831 -13.10067 -12.44458 -12.34875 -12.16047 -12.09380 -12.06117 -11.55053 -11.37559 -10.86747 -10.78561 -10.42362 -10.23330 -10.05151 -9.90601 -9.73846 -9.44650 -9.00704 -8.86397 -7.07356 -5.82662 -3.13661 0.76839 2.02895 2.51754 2.64503 3.08339 3.40979 3.46010 3.46986 3.50499 4.02445 4.53659 4.68195 4.87427 4.93090 4.95806 5.12806 5.25480 5.36090 5.43269 5.52788 5.58432 5.86334 6.00276 6.12481 6.20480 6.49782 6.57537 6.72768 6.75004 6.97140 7.55765 7.64469 8.01900 8.17243 8.34453 9.46512 9.99822 10.35143 11.39098 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.004912 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.968639 B = 5699.076010 C = 7073.726089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.283 6.283 3 C 0.199 3.801 4 C -0.162 4.162 5 C -0.047 4.047 6 C 0.600 3.400 7 O -0.523 6.523 8 N -0.691 5.691 9 C 0.112 3.888 10 C 0.159 3.841 11 H 0.056 0.944 12 C -0.162 4.162 13 N -0.724 5.724 14 C -0.246 4.246 15 H 0.071 0.929 16 C -0.007 4.007 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.286 1.286 22 O 0.126 5.874 23 N -0.388 5.388 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.189 0.811 28 H 0.419 0.581 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.059 0.941 34 H 0.385 0.615 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 -12.659 -7.826 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.189 6.189 3 C 0.002 3.998 4 C -0.184 4.184 5 C -0.114 4.114 6 C 0.382 3.618 7 O -0.401 6.401 8 N -0.341 5.341 9 C -0.011 4.011 10 C 0.048 3.952 11 H 0.074 0.926 12 C -0.223 4.223 13 N -0.367 5.367 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 O 0.059 5.941 23 N -0.111 5.111 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.206 0.794 28 H 0.257 0.743 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.220 0.780 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.923 -12.774 -7.854 15.024 hybrid contribution -0.717 0.467 0.419 0.952 sum -1.640 -12.307 -7.436 14.473 Atomic orbital electron populations 1.23092 0.76679 1.04093 1.02593 1.86196 1.22689 1.20487 1.89544 1.21892 0.90649 0.85840 1.01415 1.22111 0.94304 0.94904 1.07130 1.24168 0.87220 0.93790 1.06194 1.16476 0.84892 0.82331 0.78132 1.90849 1.26419 1.71515 1.51292 1.45937 1.12369 1.04658 1.71175 1.21878 0.85367 0.91773 1.02132 1.20526 0.91757 0.89603 0.93279 0.92596 1.22364 0.98139 1.01627 1.00191 1.42476 1.43976 1.33415 1.16842 1.19160 1.13445 1.04005 1.01126 0.91086 1.24738 1.00167 0.99061 0.96448 1.69646 1.41699 1.39655 1.06680 0.86292 0.80756 0.82483 0.76755 1.21173 1.21746 1.21290 1.85027 1.11776 1.29381 1.67899 1.74029 1.16054 0.96615 1.24374 0.92041 0.92143 0.87615 0.79392 0.74337 0.91075 0.91035 0.93122 0.94108 0.92199 0.78042 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.73 101.05 1.08 1.35 16 2 O -0.28 -3.45 10.57 -18.91 -0.20 -3.65 16 3 C 0.20 2.78 8.00 -16.72 -0.13 2.64 16 4 C -0.16 -2.17 10.97 -38.77 -0.43 -2.59 16 5 C -0.05 -0.70 7.29 -36.36 -0.26 -0.97 16 6 C 0.60 9.58 7.82 -12.47 -0.10 9.48 16 7 O -0.52 -9.32 16.91 5.29 0.09 -9.23 16 8 N -0.69 -11.02 5.38 -61.35 -0.33 -11.35 16 9 C 0.11 1.76 5.23 -4.04 -0.02 1.74 16 10 C 0.16 2.81 3.05 -67.93 -0.21 2.60 16 11 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.16 -2.66 9.49 37.16 0.35 -2.30 16 13 N -0.72 -16.50 4.56 -53.42 -0.24 -16.74 16 14 C -0.25 -6.36 9.93 -15.06 -0.15 -6.51 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 18 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 O 0.13 1.97 11.03 15.50 0.17 2.14 16 23 N -0.39 -5.94 11.50 30.47 0.35 -5.59 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.19 2.11 8.06 -52.48 -0.42 1.69 16 28 H 0.42 6.97 7.96 -40.82 -0.32 6.65 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 9.53 7.80 -40.82 -0.32 9.22 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -30.03 315.06 -4.09 -34.11 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -4.41 Total: 10.05 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.04 Total: 5.15 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.50 Total: -59.89 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.06 Total: -10.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.03 -4.09 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713305646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.557 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds