Wall clock time and date at job start Mon Mar 30 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35733 * 117.00128 * 2 1 4 4 C 1.41852 * 126.79015 * 179.70739 * 3 2 1 5 5 C 1.36658 * 103.81624 * 180.26165 * 4 3 2 6 6 C 1.47539 * 126.88463 * 180.02562 * 5 4 3 7 7 O 1.21583 * 119.99375 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00387 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00222 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47350 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.46852 * 295.00480 * 10 9 8 12 12 C 1.52997 * 109.47262 * 175.00009 * 10 9 8 13 13 N 1.46507 * 109.47074 * 54.99713 * 10 9 8 14 14 C 1.36931 * 119.99875 * 204.99978 * 13 10 9 15 15 H 1.08001 * 120.00177 * 0.02562 * 14 13 10 16 16 C 1.38810 * 119.99856 * 180.02562 * 14 13 10 17 17 N 1.31620 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00154 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46858 * 60.00019 * 18 16 14 20 20 H 1.48495 * 109.47285 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47237 * 300.00491 * 18 16 14 22 22 O 1.34661 * 106.23870 * 0.02562 * 5 4 3 23 23 N 1.20874 * 111.63599 * 359.97438 * 22 5 4 24 24 H 1.09002 * 109.47239 * 299.99875 * 1 2 3 25 25 H 1.08996 * 109.47102 * 59.99953 * 1 2 3 26 26 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 27 27 H 1.08005 * 128.08708 * 0.26669 * 4 3 2 28 28 H 0.97003 * 120.00369 * 0.02562 * 8 6 5 29 29 H 1.09000 * 109.47194 * 300.00291 * 9 8 6 30 30 H 1.08996 * 109.46996 * 59.99998 * 9 8 6 31 31 H 1.08999 * 109.47075 * 299.99955 * 12 10 9 32 32 H 1.09004 * 109.47201 * 59.99787 * 12 10 9 33 33 H 1.09002 * 109.46829 * 179.97438 * 12 10 9 34 34 H 0.96995 * 119.99919 * 25.00538 * 13 10 9 35 35 H 0.97000 * 120.00431 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4506 0.0058 5 6 3.5390 2.8138 0.0091 6 6 4.7784 3.6142 0.0150 7 8 5.8603 3.0595 0.0169 8 7 4.7113 4.9602 0.0173 9 6 5.9419 5.7551 0.0237 10 6 5.5878 7.2435 0.0257 11 1 5.0846 7.4985 -0.9070 12 6 6.8672 8.0720 0.1581 13 7 4.6997 7.5327 1.1544 14 6 3.8529 8.6075 1.1014 15 1 3.8394 9.2417 0.2274 16 6 3.0118 8.8817 2.1711 17 7 3.0286 8.1091 3.2365 18 14 1.8571 10.3484 2.0992 19 1 0.9333 10.1949 0.9466 20 1 1.0717 10.4222 3.3573 21 1 2.6487 11.5942 1.9365 22 8 2.2758 3.2802 0.0060 23 7 1.4685 2.3805 0.0008 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.2442 0.7261 0.0072 28 1 3.8481 5.4029 0.0154 29 1 6.5224 5.5189 0.9155 30 1 6.5295 5.5222 -0.8643 31 1 7.3703 7.8170 1.0908 32 1 7.5280 7.8568 -0.6817 33 1 6.6149 9.1324 0.1590 34 1 4.7116 6.9629 1.9393 35 1 2.4406 8.3005 3.9838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713305646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:10 Heat of formation + Delta-G solvation = -17.054385 kcal Electronic energy + Delta-G solvation = -20227.616831 eV Core-core repulsion = 16843.488701 eV Total energy + Delta-G solvation = -3384.128130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.11797 -40.80077 -39.95029 -37.96076 -35.34347 -34.33757 -33.79952 -32.81271 -30.53149 -28.66007 -27.62251 -25.73042 -24.58509 -24.30670 -21.85689 -21.71669 -20.05790 -19.22252 -19.09195 -17.95179 -17.42551 -17.11091 -16.86554 -16.59239 -16.17753 -15.95500 -15.43944 -15.36317 -14.80630 -14.64969 -13.90338 -13.63560 -13.42910 -13.18305 -13.04854 -12.93147 -12.72383 -12.58914 -12.44994 -12.20730 -11.69496 -11.64227 -11.49882 -11.04265 -10.92603 -10.50119 -10.15713 -8.99169 -7.88802 -5.17291 -0.39835 0.93942 1.46253 1.52437 1.53325 1.55390 1.59165 1.84669 2.31506 2.60638 2.96338 3.46117 3.62611 3.75751 3.93657 3.99589 4.00760 4.23025 4.28076 4.44041 4.56165 4.62864 4.67900 4.77444 4.86874 5.12225 5.24229 5.32921 5.59461 5.61372 5.79738 6.26765 6.32158 6.81968 6.93311 7.40046 8.13020 8.36153 9.33780 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.004912 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.968639 B = 5699.076010 C = 7073.726089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.286 6.286 3 C 0.202 3.798 4 C -0.149 4.149 5 C -0.059 4.059 6 C 0.605 3.395 7 O -0.542 6.542 8 N -0.692 5.692 9 C 0.120 3.880 10 C 0.157 3.843 11 H 0.062 0.938 12 C -0.155 4.155 13 N -0.734 5.734 14 C -0.234 4.234 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.967 5.967 18 Si 0.964 3.036 19 H -0.278 1.278 20 H -0.303 1.303 21 H -0.281 1.281 22 O 0.110 5.890 23 N -0.403 5.403 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.211 0.789 28 H 0.415 0.585 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.373 0.627 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -13.312 -9.173 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.193 6.193 3 C 0.004 3.996 4 C -0.172 4.172 5 C -0.125 4.125 6 C 0.389 3.611 7 O -0.421 6.421 8 N -0.341 5.341 9 C -0.004 4.004 10 C 0.048 3.952 11 H 0.080 0.920 12 C -0.215 4.215 13 N -0.375 5.375 14 C -0.366 4.366 15 H 0.097 0.903 16 C -0.262 4.262 17 N -0.618 5.618 18 Si 0.794 3.206 19 H -0.204 1.204 20 H -0.229 1.229 21 H -0.207 1.207 22 O 0.045 5.955 23 N -0.128 5.128 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.228 0.772 28 H 0.252 0.748 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.205 0.795 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.596 -13.413 -9.256 16.308 hybrid contribution -0.790 0.580 0.756 1.238 sum -1.386 -12.833 -8.500 15.455 Atomic orbital electron populations 1.23395 0.74894 1.06398 1.02411 1.86219 1.24449 1.19417 1.89182 1.22079 0.90974 0.86103 1.00415 1.22424 0.94735 0.94642 1.05361 1.24034 0.86795 0.94229 1.07418 1.16483 0.84998 0.82158 0.77495 1.90835 1.27153 1.71769 1.52309 1.45943 1.12269 1.04830 1.71102 1.21827 0.85362 0.90170 1.03028 1.20736 0.91599 0.91257 0.91592 0.91969 1.22233 0.97721 1.00074 1.01499 1.42629 1.44555 1.32520 1.17798 1.19540 1.12477 1.03963 1.00629 0.90296 1.25419 1.02413 1.01697 0.96662 1.69797 1.43001 1.41599 1.07383 0.85352 0.79038 0.79983 0.76199 1.20422 1.22930 1.20727 1.85007 1.12034 1.29771 1.68691 1.74010 1.16341 0.97158 1.25337 0.92489 0.92053 0.84116 0.77239 0.74765 0.91730 0.88468 0.93718 0.90472 0.93815 0.79461 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.73 113.37 1.22 1.59 16 2 O -0.29 -6.51 10.57 -90.56 -0.96 -7.46 16 3 C 0.20 5.39 8.00 85.78 0.69 6.08 16 4 C -0.15 -3.80 10.97 22.79 0.25 -3.55 16 5 C -0.06 -1.71 7.29 24.36 0.18 -1.53 16 6 C 0.61 18.86 7.82 86.70 0.68 19.53 16 7 O -0.54 -18.62 16.91 -3.98 -0.07 -18.68 16 8 N -0.69 -21.56 5.38 -466.28 -2.51 -24.07 16 9 C 0.12 3.56 5.23 86.38 0.45 4.01 16 10 C 0.16 5.31 3.05 44.99 0.14 5.44 16 11 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 12 C -0.16 -4.74 9.49 71.98 0.68 -4.06 16 13 N -0.73 -33.18 4.56 -322.93 -1.47 -34.65 16 14 C -0.23 -11.98 9.93 84.03 0.83 -11.14 16 15 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 16 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 17 N -0.97 -57.11 13.06 21.65 0.28 -56.83 16 18 Si 0.96 44.62 29.55 68.60 2.03 46.64 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 O 0.11 3.43 11.03 65.66 0.72 4.16 16 23 N -0.40 -12.17 11.50 -172.01 -1.98 -14.15 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.21 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.42 13.75 7.96 -92.71 -0.74 13.02 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.37 18.65 7.80 -92.71 -0.72 17.93 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -63.63 315.06 1.30 -62.33 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.33 Total: 29.66 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.58 Total: 13.05 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.68 Total: -129.70 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.30 Total: -21.99 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.63 1.30 -62.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713305646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.276 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds