Wall clock time and date at job start Mon Mar 30 2020 00:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35356 * 116.99886 * 2 1 4 4 N 1.30539 * 125.44594 * 180.02562 * 3 2 1 5 5 C 1.36329 * 108.38636 * 180.02562 * 4 3 2 6 6 C 1.47372 * 126.41856 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00299 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99647 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47354 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.46880 * 294.99622 * 10 9 8 12 12 C 1.52996 * 109.47500 * 174.99786 * 10 9 8 13 13 N 1.46502 * 109.47399 * 54.99186 * 10 9 8 14 14 C 1.36932 * 120.00209 * 205.00185 * 13 10 9 15 15 H 1.08005 * 120.00125 * 0.02562 * 14 13 10 16 16 C 1.38816 * 119.99969 * 180.02562 * 14 13 10 17 17 N 1.31616 * 120.00013 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46871 * 89.99864 * 18 16 14 20 20 H 1.48496 * 109.47026 * 210.00256 * 18 16 14 21 21 H 1.48497 * 109.47113 * 330.00097 * 18 16 14 22 22 C 1.35915 * 107.17384 * 359.97438 * 5 4 3 23 23 O 1.34208 * 125.44405 * 0.05107 * 3 2 1 24 24 H 1.08997 * 109.47061 * 60.00356 * 1 2 3 25 25 H 1.08997 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46939 * 299.99849 * 1 2 3 27 27 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 28 28 H 1.09001 * 109.46715 * 299.99220 * 9 8 6 29 29 H 1.08992 * 109.47698 * 59.99282 * 9 8 6 30 30 H 1.08994 * 109.47380 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.46920 * 299.99812 * 12 10 9 32 32 H 1.08999 * 109.47288 * 59.99294 * 12 10 9 33 33 H 0.97002 * 119.99410 * 25.00216 * 13 10 9 34 34 H 0.97001 * 120.00218 * 180.02562 * 17 16 14 35 35 H 1.07996 * 126.46239 * 179.74077 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5701 2.7406 0.0003 6 6 4.8892 3.3977 0.0006 7 8 4.9640 4.6116 0.0008 8 7 6.0128 2.6534 -0.0003 9 6 7.3241 3.3065 0.0006 10 6 8.4238 2.2427 -0.0002 11 1 8.3827 1.6771 0.9307 12 6 9.7895 2.9209 -0.1250 13 7 8.2241 1.3347 -1.1324 14 6 8.7164 0.0579 -1.0812 15 1 9.2515 -0.2799 -0.2060 16 6 8.5276 -0.8023 -2.1543 17 7 7.8759 -0.3905 -3.2211 18 14 9.1986 -2.5442 -2.0842 19 1 8.1734 -3.4464 -1.5008 20 1 9.5361 -3.0002 -3.4565 21 1 10.4196 -2.5707 -1.2395 22 6 2.3603 3.3601 0.0007 23 8 1.4227 2.3959 0.0010 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.9532 1.6852 -0.0009 28 1 7.4203 3.9295 -0.8887 29 1 7.4203 3.9273 0.8912 30 1 10.5729 2.1631 -0.1251 31 1 9.8305 3.4865 -1.0559 32 1 9.9380 3.5965 0.7173 33 1 7.7431 1.6380 -1.9183 34 1 7.7437 -0.9917 -3.9708 35 1 2.1849 4.4257 0.0052 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713328730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:14 Heat of formation + Delta-G solvation = -30.995509 kcal Electronic energy + Delta-G solvation = -20272.084235 eV Core-core repulsion = 16887.351573 eV Total energy + Delta-G solvation = -3384.732662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.46273 -39.31357 -38.81641 -36.27478 -34.93138 -33.45157 -31.75923 -30.16248 -28.67133 -27.63126 -26.27407 -23.89504 -23.29205 -22.33976 -20.42270 -20.11052 -18.83924 -17.57704 -17.38747 -16.96905 -16.43769 -15.65167 -15.39572 -15.37613 -15.05464 -14.43545 -13.84554 -13.72143 -13.47696 -12.94593 -12.52482 -12.24727 -12.12421 -12.05273 -11.96503 -11.33161 -11.02945 -10.81255 -10.71708 -10.69953 -10.30799 -10.01936 -9.89914 -9.65135 -8.91755 -8.81151 -8.54102 -6.96939 -5.73615 -3.03744 1.11560 1.84219 2.10531 2.68118 3.44460 3.47089 3.51634 3.53004 3.53823 4.56276 4.61798 4.65541 4.72164 4.86249 5.02935 5.22163 5.46507 5.49494 5.54146 5.63266 5.78159 5.98790 6.11446 6.22816 6.34813 6.54348 6.60592 6.77747 6.84941 7.07224 7.48870 7.72999 7.98136 8.43267 8.49838 9.55415 10.10043 10.45443 11.48469 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.005520 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.395541 B = 5071.508992 C = 6678.120474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.242 6.242 3 C 0.377 3.623 4 N -0.443 5.443 5 C -0.038 4.038 6 C 0.597 3.403 7 O -0.551 6.551 8 N -0.689 5.689 9 C 0.113 3.887 10 C 0.159 3.841 11 H 0.054 0.946 12 C -0.162 4.162 13 N -0.723 5.723 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.289 1.289 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.007 4.007 23 O -0.229 6.229 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.421 0.579 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.386 5.633 7.870 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.150 6.150 3 C 0.131 3.869 4 N -0.188 5.188 5 C -0.157 4.157 6 C 0.382 3.618 7 O -0.430 6.430 8 N -0.340 5.340 9 C -0.011 4.011 10 C 0.048 3.952 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.366 5.366 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.079 4.079 23 O -0.120 6.120 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.782 5.555 7.903 16.830 hybrid contribution -0.588 -0.871 -0.417 1.130 sum -14.370 4.684 7.485 16.866 Atomic orbital electron populations 1.23275 0.75420 1.05550 1.02800 1.86429 1.23389 1.15841 1.89322 1.23410 0.85653 0.79466 0.98382 1.71238 1.09508 1.15651 1.22430 1.21792 0.96025 0.88348 1.09546 1.16654 0.82127 0.85881 0.77153 1.90788 1.86926 1.12761 1.52543 1.45860 1.04914 1.12015 1.71174 1.21795 0.81690 0.95935 1.01699 1.20514 0.91325 0.90166 0.93148 0.92777 1.22359 0.99610 1.00178 1.00088 1.42459 1.67134 1.10466 1.16494 1.19203 1.29007 0.88300 1.00799 0.91116 1.24734 1.00990 0.98359 0.96503 1.69665 1.45988 1.35572 1.06466 0.86215 0.78450 0.85033 0.76610 1.21679 1.21894 1.20818 1.24889 0.84993 0.93645 1.04410 1.84363 1.39615 1.15916 1.72126 0.91475 0.86401 0.91568 0.74043 0.91456 0.91471 0.92280 0.93181 0.94187 0.78058 0.93528 0.74881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.73 101.05 1.08 1.25 16 2 O -0.24 -3.05 10.55 -40.99 -0.43 -3.48 16 3 C 0.38 5.48 8.98 52.21 0.47 5.95 16 4 N -0.44 -7.76 11.10 -11.71 -0.13 -7.89 16 5 C -0.04 -0.62 6.99 -82.98 -0.58 -1.20 16 6 C 0.60 10.78 7.81 -12.55 -0.10 10.69 16 7 O -0.55 -10.56 16.89 5.26 0.09 -10.47 16 8 N -0.69 -12.82 5.38 -61.40 -0.33 -13.15 16 9 C 0.11 2.00 5.23 -4.04 -0.02 1.98 16 10 C 0.16 3.09 3.05 -67.93 -0.21 2.88 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.16 -2.85 9.49 37.16 0.35 -2.50 16 13 N -0.72 -17.70 4.56 -53.42 -0.24 -17.94 16 14 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.01 -0.09 11.93 29.90 0.36 0.27 16 23 O -0.23 -2.80 10.20 -17.78 -0.18 -2.98 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.42 8.50 7.86 -40.82 -0.32 8.18 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.39 10.25 7.80 -40.82 -0.32 9.93 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.24 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -33.16 315.34 -4.08 -37.23 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.41 Total: 11.66 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 1.11 Total: 12.22 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: 0.02 Total: -66.36 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.52 Total: -16.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.16 -4.08 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713328730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.237 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds