Wall clock time and date at job start Mon Mar 30 2020 00:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35731 * 117.00370 * 2 1 4 4 C 1.41850 * 126.78962 * 180.02562 * 3 2 1 5 5 C 1.36665 * 103.81129 * 180.25658 * 4 3 2 6 6 C 1.47545 * 126.87696 * 179.73738 * 5 4 3 7 7 O 1.21575 * 119.99867 * 353.13807 * 6 5 4 8 8 N 1.34769 * 119.99760 * 173.13568 * 6 5 4 9 9 C 1.46498 * 120.00194 * 3.61753 * 8 6 5 10 10 C 1.46500 * 120.00079 * 183.62023 * 8 6 5 11 11 C 1.52999 * 109.47191 * 89.99714 * 10 8 6 12 12 N 1.46500 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.36936 * 120.00060 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00091 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00143 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00030 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47497 * 59.99765 * 17 15 13 19 19 H 1.48507 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46888 * 299.99262 * 17 15 13 21 21 O 1.34659 * 106.24332 * 359.59707 * 5 4 3 22 22 N 1.20883 * 111.63062 * 0.43641 * 21 5 4 23 23 H 1.09005 * 109.46838 * 300.00312 * 1 2 3 24 24 H 1.09001 * 109.46896 * 60.00141 * 1 2 3 25 25 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.08005 * 128.09374 * 359.97438 * 4 3 2 27 27 H 1.09012 * 109.46968 * 84.02178 * 9 8 6 28 28 H 1.09000 * 109.47252 * 204.01552 * 9 8 6 29 29 H 1.08992 * 109.47552 * 324.02597 * 9 8 6 30 30 H 1.09003 * 109.47646 * 210.00210 * 10 8 6 31 31 H 1.09007 * 109.47226 * 330.00208 * 10 8 6 32 32 H 1.08997 * 109.47381 * 300.00355 * 11 10 8 33 33 H 1.09004 * 109.46705 * 60.00668 * 11 10 8 34 34 H 0.96999 * 119.99996 * 0.02562 * 12 11 10 35 35 H 0.96994 * 120.00016 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 -0.0005 5 6 3.5391 2.8137 0.0057 6 6 4.7786 3.6140 0.0133 7 8 5.8559 3.0650 0.1405 8 7 4.7165 4.9536 -0.1206 9 6 3.4154 5.6229 -0.1942 10 6 5.9501 5.7405 -0.1927 11 6 6.3871 5.8712 -1.6532 12 7 7.6203 6.6587 -1.7253 13 6 8.2027 6.9092 -2.9391 14 1 7.7530 6.5260 -3.8433 15 6 9.3715 7.6549 -3.0074 16 7 9.9198 8.1215 -1.9056 17 14 10.1655 7.9972 -4.6633 18 1 9.2131 8.7435 -5.5242 19 1 11.3933 8.8088 -4.4652 20 1 10.5212 6.7121 -5.3168 21 8 2.2759 3.2802 0.0002 22 7 1.4686 2.3805 0.0003 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.2443 0.7260 -0.0006 27 1 3.0382 5.7958 0.8139 28 1 3.5263 6.5772 -0.7091 29 1 2.7137 4.9939 -0.7417 30 1 5.7735 6.7322 0.2238 31 1 6.7335 5.2412 0.3775 32 1 6.5637 4.8796 -2.0697 33 1 5.6037 6.3706 -2.2234 34 1 8.0244 7.0026 -0.9133 35 1 10.7364 8.6429 -1.9534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714700640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:29 Heat of formation + Delta-G solvation = 24.142983 kcal Electronic energy + Delta-G solvation = -20051.713993 eV Core-core repulsion = 16669.372315 eV Total energy + Delta-G solvation = -3382.341678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.23409 -39.86239 -39.18704 -36.19917 -34.46041 -33.46420 -32.28939 -31.20290 -28.36402 -28.02161 -26.74836 -24.60753 -23.58933 -22.88215 -21.55136 -20.48092 -18.34749 -18.21521 -17.23592 -17.20404 -16.20774 -16.13478 -15.93957 -15.42481 -15.03021 -14.50133 -14.15209 -13.74163 -13.56743 -13.34388 -13.04765 -12.88352 -12.60681 -12.29439 -12.15400 -11.72614 -11.34707 -11.03200 -10.91081 -10.69268 -10.35112 -10.13260 -10.08818 -9.74299 -9.63587 -8.87612 -8.69837 -6.94696 -5.76357 -3.06056 0.56008 1.82942 2.33433 2.36577 2.86289 3.10218 3.45661 3.49777 3.51088 3.80263 4.37010 4.54518 4.61609 4.70855 4.75886 4.92315 5.07976 5.10289 5.33827 5.39508 5.46416 5.61490 5.70436 5.76393 5.96111 6.03634 6.41077 6.57980 6.66015 6.81525 7.18485 7.69332 7.71507 7.92811 8.41949 9.53032 10.08016 10.43113 11.46409 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041654 B = 0.003222 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.040551 B = 8688.473731 C = 8831.849943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.206 3.794 4 C -0.157 4.157 5 C -0.048 4.048 6 C 0.597 3.403 7 O -0.501 6.501 8 N -0.594 5.594 9 C 0.069 3.931 10 C 0.106 3.894 11 C 0.141 3.859 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.285 1.285 21 O 0.117 5.883 22 N -0.397 5.397 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.191 0.809 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.219 -11.830 6.333 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.187 6.187 3 C 0.009 3.991 4 C -0.179 4.179 5 C -0.114 4.114 6 C 0.381 3.619 7 O -0.375 6.375 8 N -0.326 5.326 9 C -0.074 4.074 10 C -0.016 4.016 11 C 0.013 3.987 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 O 0.052 5.948 22 N -0.122 5.122 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.208 0.792 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.741 -11.989 6.231 24.754 hybrid contribution 0.855 -0.071 -0.697 1.106 sum -19.886 -12.060 5.534 23.906 Atomic orbital electron populations 1.23099 0.76600 1.04258 1.02457 1.86225 1.22741 1.20440 1.89342 1.21867 0.90613 0.85796 1.00866 1.22193 0.94453 0.94987 1.06311 1.24150 0.86940 0.93830 1.06449 1.16597 0.85033 0.81896 0.78371 1.90921 1.26742 1.70637 1.49238 1.47717 1.08848 1.05426 1.70591 1.22102 0.83516 0.99191 1.02593 1.21892 0.84775 0.95256 0.99642 1.20928 0.89970 0.95383 0.92464 1.42183 1.25453 1.62713 1.07129 1.19156 1.04809 1.27313 0.85845 0.91199 1.24752 0.98181 1.00817 0.97134 1.69648 1.21842 1.40810 1.25877 0.86234 0.78653 0.77812 0.83280 1.21244 1.21632 1.21201 1.85127 1.11969 1.29137 1.68548 1.73958 1.16464 0.96820 1.24968 0.92143 0.92094 0.87507 0.79215 0.91757 0.89500 0.90360 0.89585 0.89070 0.95841 0.96111 0.78175 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.90 10.57 -18.90 -0.20 -3.10 16 3 C 0.21 2.39 8.00 -16.72 -0.13 2.26 16 4 C -0.16 -1.84 10.98 -38.77 -0.43 -2.27 16 5 C -0.05 -0.60 6.89 -36.36 -0.25 -0.85 16 6 C 0.60 8.86 7.67 -12.47 -0.10 8.77 16 7 O -0.50 -9.13 16.48 5.30 0.09 -9.05 16 8 N -0.59 -8.14 2.87 -182.81 -0.53 -8.67 16 9 C 0.07 0.68 9.68 59.85 0.58 1.26 16 10 C 0.11 1.72 5.52 -4.04 -0.02 1.70 16 11 C 0.14 2.88 6.58 -4.04 -0.03 2.85 16 12 N -0.73 -18.67 5.60 -59.91 -0.34 -19.00 16 13 C -0.24 -6.81 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 17 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 O 0.12 1.34 7.98 15.50 0.12 1.47 16 22 N -0.40 -4.70 11.50 30.47 0.35 -4.35 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.19 1.96 8.06 -52.48 -0.42 1.53 16 27 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.09 0.80 8.03 -51.93 -0.42 0.39 16 29 H 0.08 0.74 5.42 -51.93 -0.28 0.46 16 30 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.09 1.62 7.37 -51.93 -0.38 1.23 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -33.32 310.08 -3.98 -37.30 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.32 Total: 3.19 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 0.46 Total: 7.58 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.21 Total: -59.61 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.01 Total: -10.68 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.32 -3.98 -37.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714700640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.448 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds