Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35731 * 117.00370 * 2 1 4 4 C 1.41850 * 126.78962 * 180.02562 * 3 2 1 5 5 C 1.36665 * 103.81129 * 180.25658 * 4 3 2 6 6 C 1.47545 * 126.87696 * 179.73738 * 5 4 3 7 7 O 1.21575 * 119.99867 * 353.13807 * 6 5 4 8 8 N 1.34769 * 119.99760 * 173.13568 * 6 5 4 9 9 C 1.46498 * 120.00194 * 3.61753 * 8 6 5 10 10 C 1.46500 * 120.00079 * 183.62023 * 8 6 5 11 11 C 1.52999 * 109.47191 * 89.99714 * 10 8 6 12 12 N 1.46500 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.36936 * 120.00060 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00091 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00143 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00030 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47497 * 59.99765 * 17 15 13 19 19 H 1.48507 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46888 * 299.99262 * 17 15 13 21 21 O 1.34659 * 106.24332 * 359.59707 * 5 4 3 22 22 N 1.20883 * 111.63062 * 0.43641 * 21 5 4 23 23 H 1.09005 * 109.46838 * 300.00312 * 1 2 3 24 24 H 1.09001 * 109.46896 * 60.00141 * 1 2 3 25 25 H 1.08995 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.08005 * 128.09374 * 359.97438 * 4 3 2 27 27 H 1.09012 * 109.46968 * 84.02178 * 9 8 6 28 28 H 1.09000 * 109.47252 * 204.01552 * 9 8 6 29 29 H 1.08992 * 109.47552 * 324.02597 * 9 8 6 30 30 H 1.09003 * 109.47646 * 210.00210 * 10 8 6 31 31 H 1.09007 * 109.47226 * 330.00208 * 10 8 6 32 32 H 1.08997 * 109.47381 * 300.00355 * 11 10 8 33 33 H 1.09004 * 109.46705 * 60.00668 * 11 10 8 34 34 H 0.96999 * 119.99996 * 0.02562 * 12 11 10 35 35 H 0.96994 * 120.00016 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4432 1.4504 -0.0005 5 6 3.5391 2.8137 0.0057 6 6 4.7786 3.6140 0.0133 7 8 5.8559 3.0650 0.1405 8 7 4.7165 4.9536 -0.1206 9 6 3.4154 5.6229 -0.1942 10 6 5.9501 5.7405 -0.1927 11 6 6.3871 5.8712 -1.6532 12 7 7.6203 6.6587 -1.7253 13 6 8.2027 6.9092 -2.9391 14 1 7.7530 6.5260 -3.8433 15 6 9.3715 7.6549 -3.0074 16 7 9.9198 8.1215 -1.9056 17 14 10.1655 7.9972 -4.6633 18 1 9.2131 8.7435 -5.5242 19 1 11.3933 8.8088 -4.4652 20 1 10.5212 6.7121 -5.3168 21 8 2.2759 3.2802 0.0002 22 7 1.4686 2.3805 0.0003 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.2443 0.7260 -0.0006 27 1 3.0382 5.7958 0.8139 28 1 3.5263 6.5772 -0.7091 29 1 2.7137 4.9939 -0.7417 30 1 5.7735 6.7322 0.2238 31 1 6.7335 5.2412 0.3775 32 1 6.5637 4.8796 -2.0697 33 1 5.6037 6.3706 -2.2234 34 1 8.0244 7.0026 -0.9133 35 1 10.7364 8.6429 -1.9534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714700640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -1.612442 kcal Electronic energy + Delta-G solvation = -20052.830832 eV Core-core repulsion = 16669.372315 eV Total energy + Delta-G solvation = -3383.458517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.15436 -41.05139 -39.95527 -37.57332 -36.19833 -34.38047 -33.68126 -32.78902 -29.93386 -28.64540 -27.75472 -26.23258 -24.64865 -24.26260 -22.98736 -21.54456 -19.51024 -19.16297 -19.07549 -18.07842 -17.50305 -17.12089 -16.89699 -16.58463 -16.22687 -15.93443 -15.37628 -15.18170 -15.09743 -14.85676 -14.46199 -14.08679 -13.23411 -13.13051 -13.06545 -12.91551 -12.83418 -12.71724 -12.59734 -12.31415 -12.15233 -11.87325 -11.52991 -11.06593 -10.95101 -10.47431 -9.87478 -9.04483 -7.96024 -5.26452 -0.43741 0.91601 1.29025 1.48397 1.51827 1.54381 1.58067 1.75835 2.08512 2.57371 2.92007 3.37370 3.44108 3.63261 3.96156 4.03394 4.13556 4.21045 4.25486 4.27640 4.34107 4.54500 4.58552 4.63701 4.69384 4.95322 4.99413 5.08493 5.34071 5.48561 5.82107 6.05709 6.25581 6.66165 6.90422 7.32278 8.03907 8.28958 9.27037 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041654 B = 0.003222 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.040551 B = 8688.473731 C = 8831.849943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.205 3.795 4 C -0.154 4.154 5 C -0.053 4.053 6 C 0.597 3.403 7 O -0.544 6.544 8 N -0.590 5.590 9 C 0.064 3.936 10 C 0.121 3.879 11 C 0.145 3.855 12 N -0.742 5.742 13 C -0.251 4.251 14 H 0.074 0.926 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.976 3.024 18 H -0.274 1.274 19 H -0.293 1.293 20 H -0.280 1.280 21 O 0.125 5.875 22 N -0.399 5.399 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.200 0.800 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.004 0.996 33 H 0.034 0.966 34 H 0.377 0.623 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.987 -12.091 5.889 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.008 3.992 4 C -0.177 4.177 5 C -0.119 4.119 6 C 0.383 3.617 7 O -0.421 6.421 8 N -0.321 5.321 9 C -0.077 4.077 10 C -0.002 4.002 11 C 0.017 3.983 12 N -0.386 5.386 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.804 3.196 18 H -0.200 1.200 19 H -0.219 1.219 20 H -0.207 1.207 21 O 0.060 5.940 22 N -0.124 5.124 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.217 0.783 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.022 0.978 33 H 0.052 0.948 34 H 0.209 0.791 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.591 -12.266 5.779 26.348 hybrid contribution 1.264 -0.064 -0.547 1.379 sum -21.327 -12.330 5.232 25.184 Atomic orbital electron populations 1.23404 0.74686 1.06349 1.02630 1.86236 1.24646 1.19696 1.89079 1.21934 0.90575 0.86185 1.00516 1.22405 0.95082 0.94963 1.05257 1.23673 0.86648 0.93729 1.07838 1.16810 0.85204 0.82155 0.77553 1.90897 1.28477 1.71516 1.51258 1.47752 1.09380 1.05153 1.69787 1.22374 0.81593 0.99397 1.04377 1.21564 0.85596 0.96516 0.96535 1.20993 0.88356 0.93482 0.95434 1.42356 1.26957 1.63183 1.06092 1.19547 1.05018 1.26700 0.86976 0.90847 1.25595 0.98980 1.01203 1.00682 1.69800 1.22192 1.41796 1.27928 0.85185 0.77546 0.77651 0.79204 1.20022 1.21870 1.20662 1.85128 1.11384 1.28978 1.68505 1.73932 1.16390 0.97046 1.25053 0.91857 0.91976 0.84575 0.78284 0.89481 0.88412 0.89636 0.87327 0.90886 0.97803 0.94830 0.79051 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.73 113.37 1.22 1.48 16 2 O -0.29 -5.48 10.57 -90.54 -0.96 -6.44 16 3 C 0.20 4.45 8.00 85.78 0.69 5.14 16 4 C -0.15 -3.48 10.98 22.80 0.25 -3.23 16 5 C -0.05 -1.28 6.89 24.36 0.17 -1.11 16 6 C 0.60 17.51 7.67 86.70 0.67 18.17 16 7 O -0.54 -20.20 16.48 -3.95 -0.07 -20.26 16 8 N -0.59 -15.51 2.87 -850.55 -2.44 -17.95 16 9 C 0.06 1.12 9.68 127.77 1.24 2.35 16 10 C 0.12 3.84 5.52 86.38 0.48 4.32 16 11 C 0.14 5.88 6.58 86.38 0.57 6.45 16 12 N -0.74 -38.19 5.60 -343.45 -1.92 -40.11 16 13 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 14 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 16 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 17 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 O 0.13 2.67 7.98 65.66 0.52 3.19 16 22 N -0.40 -8.75 11.50 -172.00 -1.98 -10.72 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.10 1.54 8.03 -2.39 -0.02 1.52 16 29 H 0.09 1.41 5.42 -2.39 -0.01 1.40 16 30 H 0.11 2.99 8.07 -2.39 -0.02 2.97 16 31 H 0.07 2.63 7.37 -2.38 -0.02 2.61 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.03 1.29 8.14 -2.38 -0.02 1.28 16 34 H 0.38 20.24 7.67 -92.71 -0.71 19.53 16 35 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -71.13 310.08 2.45 -68.68 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.41 Total: 17.73 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.57 Total: 16.49 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -6.06 Total: -127.71 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.50 Total: -23.51 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -71.13 2.45 -68.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714700640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.072 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds