Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48496 * 109.47532 * 270.00217 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00472 * 3 2 1 6 6 H 1.48497 * 109.47432 * 150.00166 * 3 2 1 7 7 C 1.38808 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00185 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00066 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47277 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00048 * 269.99982 * 12 11 10 14 14 C 1.52996 * 109.47436 * 262.54050 * 13 12 11 15 15 O 1.42902 * 109.47438 * 64.99554 * 14 13 12 16 16 C 1.34779 * 120.00196 * 90.00315 * 12 11 10 17 17 O 1.21612 * 119.99956 * 1.35040 * 16 12 11 18 18 C 1.47235 * 120.00124 * 181.35618 * 16 12 11 19 19 C 1.37001 * 127.18898 * 171.23699 * 18 16 12 20 20 N 1.33324 * 106.36944 * 180.02562 * 19 18 16 21 21 N 1.28503 * 109.44174 * 0.02562 * 20 19 18 22 22 N 1.28718 * 110.63920 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.03730 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00198 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46729 * 60.00473 * 10 9 7 27 27 H 1.08996 * 109.47699 * 300.00576 * 10 9 7 28 28 H 1.09005 * 109.46931 * 59.99963 * 11 10 9 29 29 H 1.08996 * 109.47078 * 300.00748 * 11 10 9 30 30 H 1.09007 * 109.46918 * 22.53873 * 13 12 11 31 31 H 1.09004 * 109.47345 * 142.53562 * 13 12 11 32 32 H 1.08997 * 109.47458 * 185.00323 * 14 13 12 33 33 H 1.09004 * 109.47122 * 304.99980 * 14 13 12 34 34 H 0.96700 * 113.99964 * 180.02562 * 15 14 13 35 35 H 1.08000 * 126.81663 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 7 1.7961 -6.0884 -0.0026 13 6 2.1623 -6.7223 -1.2716 14 6 1.1323 -7.7986 -1.6200 15 8 -0.1366 -7.1850 -1.8562 16 6 2.1331 -6.6725 1.1644 17 8 1.8077 -6.1590 2.2176 18 6 2.8952 -7.9323 1.1640 19 6 3.4551 -8.5617 2.2444 20 7 4.0437 -9.6620 1.7749 21 7 3.8739 -9.7282 0.5028 22 7 3.1934 -8.7196 0.0828 23 1 2.9375 -8.5470 -0.8368 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6852 -3.7149 0.8879 27 1 2.6840 -3.7142 -0.8921 28 1 0.4367 -4.7614 -0.8918 29 1 0.4373 -4.7625 0.8881 30 1 2.1833 -5.9705 -2.0606 31 1 3.1477 -7.1790 -1.1787 32 1 1.4513 -8.3302 -2.5165 33 1 1.0471 -8.5018 -0.7916 34 1 -0.8393 -7.8095 -2.0826 35 1 3.4256 -8.2320 3.2725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717054703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = 57.650710 kcal Electronic energy + Delta-G solvation = -20671.939903 eV Core-core repulsion = 17323.343981 eV Total energy + Delta-G solvation = -3348.595923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.75841 -40.05175 -37.73202 -35.93571 -34.81871 -33.67391 -31.96142 -31.20905 -29.97410 -27.80445 -24.81370 -23.77470 -23.59618 -22.84262 -21.69768 -20.60713 -18.38705 -18.08777 -17.33694 -17.01622 -16.63508 -16.28187 -15.50032 -15.01944 -14.61904 -14.58603 -14.09841 -13.90902 -13.54141 -13.30196 -13.02565 -12.75952 -12.46090 -12.07910 -11.54014 -11.39873 -11.08844 -10.99283 -10.92175 -10.71562 -10.59305 -10.27982 -10.11397 -9.79718 -9.76226 -8.89611 -8.84856 -6.96041 -5.77720 -3.07485 0.62050 2.02332 2.08666 2.62471 2.86944 3.43447 3.48691 3.50696 3.52102 3.79319 4.23473 4.33784 4.48977 4.58575 4.61543 4.65992 4.76097 4.86586 5.15946 5.46179 5.60963 5.72543 5.73302 5.90677 6.04174 6.17381 6.36089 6.61462 6.79313 7.07773 7.18394 7.68425 7.81410 7.96402 8.40369 9.51629 10.06696 10.41845 11.45048 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.004216 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.739207 B = 6640.500502 C = 7213.067835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.141 3.859 11 C 0.113 3.887 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.040 3.960 15 O -0.550 6.550 16 C 0.588 3.412 17 O -0.500 6.500 18 C -0.058 4.058 19 C 0.032 3.968 20 N -0.268 5.268 21 N -0.057 5.057 22 N -0.389 5.389 23 H 0.450 0.550 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.023 0.977 27 H 0.017 0.983 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.383 0.617 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -20.324 -4.538 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.013 3.987 11 C -0.009 4.009 12 N -0.322 5.322 13 C -0.042 4.042 14 C -0.040 4.040 15 O -0.356 6.356 16 C 0.372 3.628 17 O -0.372 6.372 18 C -0.192 4.192 19 C -0.127 4.127 20 N -0.134 5.134 21 N -0.039 5.039 22 N -0.126 5.126 23 H 0.307 0.693 24 H 0.066 0.934 25 H 0.218 0.782 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.231 0.769 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.987 -20.655 -4.098 21.432 hybrid contribution -0.767 1.420 -0.576 1.713 sum 3.219 -19.236 -4.674 20.055 Atomic orbital electron populations 1.69661 1.05118 1.25746 1.57529 1.24745 0.95549 0.97711 1.02804 0.86164 0.78691 0.83693 0.77487 1.21696 1.21672 1.20724 1.19193 0.91005 0.83930 1.43033 0.91196 1.42177 1.05886 0.99646 1.89666 1.20929 0.93852 0.85811 0.98151 1.21855 0.94520 0.80079 1.04412 1.47685 1.56608 1.23907 1.04046 1.22102 0.95367 0.98067 0.88703 1.22926 0.86621 0.94890 0.99588 1.86603 1.18683 1.37540 1.92731 1.16845 0.79440 0.81918 0.84591 1.90915 1.53096 1.62984 1.30244 1.22551 1.09580 0.98547 0.88544 1.23960 0.96612 0.91532 1.00638 1.74980 1.19221 1.18435 1.00739 1.78163 1.10280 1.07734 1.07707 1.46974 1.37093 1.16604 1.11923 0.69298 0.93437 0.78152 0.95882 0.96508 0.89154 0.89241 0.86510 0.89708 0.91572 0.93659 0.76906 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 10 C 0.14 2.89 6.58 -4.04 -0.03 2.86 16 11 C 0.11 1.86 5.50 -4.05 -0.02 1.84 16 12 N -0.59 -7.63 2.44 -175.03 -0.43 -8.06 16 13 C 0.08 0.70 5.32 -4.04 -0.02 0.68 16 14 C 0.04 0.25 5.91 37.16 0.22 0.47 16 15 O -0.55 -4.68 13.40 -35.23 -0.47 -5.15 16 16 C 0.59 8.31 7.59 -12.60 -0.10 8.21 16 17 O -0.50 -8.99 16.50 5.27 0.09 -8.90 16 18 C -0.06 -0.67 6.48 -82.33 -0.53 -1.20 16 19 C 0.03 0.36 11.88 -17.35 -0.21 0.16 16 20 N -0.27 -3.32 12.35 30.47 0.38 -2.95 16 21 N -0.06 -0.63 13.35 60.35 0.81 0.17 16 22 N -0.39 -3.55 5.28 33.31 0.18 -3.37 16 23 H 0.45 2.76 3.76 -190.33 -0.72 2.05 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.38 10.30 7.67 -40.82 -0.31 9.98 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 1.44 7.87 -51.93 -0.41 1.03 16 29 H 0.09 1.64 7.40 -51.93 -0.38 1.26 16 30 H 0.12 1.00 8.02 -51.93 -0.42 0.58 16 31 H 0.09 0.55 5.11 -51.93 -0.27 0.28 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 0.30 6.66 -51.93 -0.35 -0.05 16 34 H 0.38 1.59 9.12 45.56 0.42 2.01 16 35 H 0.21 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -35.91 301.81 -4.14 -40.05 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -3.67 Total: 7.20 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -0.93 Total: 5.59 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 1.32 Total: -60.86 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.39 Total: -14.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.91 -4.14 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717054703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.705 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds