Wall clock time and date at job start Mon Mar 30 2020 01:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48496 * 109.47532 * 270.00217 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00472 * 3 2 1 6 6 H 1.48497 * 109.47432 * 150.00166 * 3 2 1 7 7 C 1.38808 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00185 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00066 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47277 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00048 * 269.99982 * 12 11 10 14 14 C 1.52996 * 109.47436 * 262.54050 * 13 12 11 15 15 O 1.42902 * 109.47438 * 64.99554 * 14 13 12 16 16 C 1.34779 * 120.00196 * 90.00315 * 12 11 10 17 17 O 1.21612 * 119.99956 * 1.35040 * 16 12 11 18 18 C 1.47235 * 120.00124 * 181.35618 * 16 12 11 19 19 C 1.37001 * 127.18898 * 171.23699 * 18 16 12 20 20 N 1.33324 * 106.36944 * 180.02562 * 19 18 16 21 21 N 1.28503 * 109.44174 * 0.02562 * 20 19 18 22 22 N 1.28718 * 110.63920 * 359.97438 * 21 20 19 23 23 H 0.96999 * 126.03730 * 179.97438 * 22 21 20 24 24 H 0.97001 * 119.99736 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00198 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.46729 * 60.00473 * 10 9 7 27 27 H 1.08996 * 109.47699 * 300.00576 * 10 9 7 28 28 H 1.09005 * 109.46931 * 59.99963 * 11 10 9 29 29 H 1.08996 * 109.47078 * 300.00748 * 11 10 9 30 30 H 1.09007 * 109.46918 * 22.53873 * 13 12 11 31 31 H 1.09004 * 109.47345 * 142.53562 * 13 12 11 32 32 H 1.08997 * 109.47458 * 185.00323 * 14 13 12 33 33 H 1.09004 * 109.47122 * 304.99980 * 14 13 12 34 34 H 0.96700 * 113.99964 * 180.02562 * 15 14 13 35 35 H 1.08000 * 126.81663 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 7 1.7961 -6.0884 -0.0026 13 6 2.1623 -6.7223 -1.2716 14 6 1.1323 -7.7986 -1.6200 15 8 -0.1366 -7.1850 -1.8562 16 6 2.1331 -6.6725 1.1644 17 8 1.8077 -6.1590 2.2176 18 6 2.8952 -7.9323 1.1640 19 6 3.4551 -8.5617 2.2444 20 7 4.0437 -9.6620 1.7749 21 7 3.8739 -9.7282 0.5028 22 7 3.1934 -8.7196 0.0828 23 1 2.9375 -8.5470 -0.8368 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6852 -3.7149 0.8879 27 1 2.6840 -3.7142 -0.8921 28 1 0.4367 -4.7614 -0.8918 29 1 0.4373 -4.7625 0.8881 30 1 2.1833 -5.9705 -2.0606 31 1 3.1477 -7.1790 -1.1787 32 1 1.4513 -8.3302 -2.5165 33 1 1.0471 -8.5018 -0.7916 34 1 -0.8393 -7.8095 -2.0826 35 1 3.4256 -8.2320 3.2725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717054703.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:57 Heat of formation + Delta-G solvation = 26.801251 kcal Electronic energy + Delta-G solvation = -20673.277636 eV Core-core repulsion = 17323.343981 eV Total energy + Delta-G solvation = -3349.933656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.65109 -41.14259 -38.53900 -37.19371 -36.23593 -34.82900 -33.47579 -32.50172 -31.00146 -29.29695 -26.28357 -24.99900 -24.42583 -24.01880 -23.11205 -21.69403 -19.47239 -19.12426 -18.78148 -17.92603 -17.60392 -17.47318 -16.72109 -16.31492 -15.90317 -15.54604 -15.34649 -15.17428 -15.11672 -14.81278 -14.33103 -13.71531 -13.39297 -13.14289 -12.96310 -12.83796 -12.66763 -12.47209 -12.27785 -12.13563 -11.90062 -11.86541 -11.48691 -11.07201 -10.97807 -10.74447 -9.98878 -9.07030 -7.97835 -5.28723 -0.31490 1.09001 1.21167 1.46933 1.49335 1.57500 1.63251 1.83492 2.55218 2.89763 2.99448 3.35527 3.37995 3.69736 3.79326 3.92330 3.95975 4.00122 4.08728 4.18856 4.24030 4.31996 4.53225 4.58672 4.85133 4.92890 5.03159 5.26631 5.44640 5.46679 6.01605 6.23425 6.71264 6.81938 7.06179 7.30014 8.01173 8.26159 9.25486 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.004216 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.739207 B = 6640.500502 C = 7213.067835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.146 3.854 11 C 0.133 3.867 12 N -0.586 5.586 13 C 0.071 3.929 14 C 0.040 3.960 15 O -0.579 6.579 16 C 0.589 3.411 17 O -0.548 6.548 18 C -0.063 4.063 19 C 0.033 3.967 20 N -0.288 5.288 21 N -0.053 5.053 22 N -0.363 5.363 23 H 0.463 0.537 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.005 0.995 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.045 0.955 34 H 0.401 0.599 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 -21.461 -5.906 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.386 5.386 10 C 0.018 3.982 11 C 0.010 3.990 12 N -0.318 5.318 13 C -0.052 4.052 14 C -0.039 4.039 15 O -0.388 6.388 16 C 0.375 3.625 17 O -0.423 6.423 18 C -0.197 4.197 19 C -0.126 4.126 20 N -0.153 5.153 21 N -0.035 5.035 22 N -0.103 5.103 23 H 0.323 0.677 24 H 0.062 0.938 25 H 0.208 0.792 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.251 0.749 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.125 -21.861 -5.527 23.124 hybrid contribution -1.090 1.682 -0.199 2.014 sum 4.035 -20.179 -5.726 21.361 Atomic orbital electron populations 1.69814 1.06627 1.26324 1.58924 1.25595 0.96448 1.01158 1.03123 0.85105 0.77593 0.79168 0.77650 1.20865 1.22004 1.19672 1.19581 0.91436 0.85164 1.42138 0.90809 1.42359 1.05704 1.00878 1.89619 1.20996 0.94302 0.85292 0.97600 1.21382 0.93459 0.80520 1.03667 1.47663 1.55784 1.22667 1.05643 1.22516 0.97351 0.98929 0.86436 1.23002 0.85528 0.93863 1.01506 1.86546 1.19979 1.39293 1.92968 1.17090 0.78938 0.82348 0.84117 1.90891 1.55038 1.64465 1.31953 1.22072 1.10197 0.97998 0.89404 1.24254 0.95853 0.91115 1.01383 1.75006 1.20138 1.18950 1.01216 1.78122 1.10065 1.07827 1.07495 1.46907 1.35831 1.15436 1.12107 0.67651 0.93777 0.79194 0.97692 0.95036 0.88260 0.91573 0.86158 0.87416 0.87211 0.93722 0.74887 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.65 5.60 -343.45 -1.92 -40.57 16 10 C 0.15 5.98 6.58 86.38 0.57 6.55 16 11 C 0.13 4.38 5.50 86.38 0.47 4.86 16 12 N -0.59 -14.61 2.44 -825.92 -2.02 -16.62 16 13 C 0.07 1.02 5.32 86.38 0.46 1.48 16 14 C 0.04 0.39 5.91 71.98 0.43 0.81 16 15 O -0.58 -8.58 13.40 -148.98 -2.00 -10.58 16 16 C 0.59 16.39 7.59 86.61 0.66 17.04 16 17 O -0.55 -20.13 16.50 -4.07 -0.07 -20.20 16 18 C -0.06 -1.35 6.48 40.41 0.26 -1.09 16 19 C 0.03 0.73 11.88 84.18 1.00 1.73 16 20 N -0.29 -6.65 12.35 -57.50 -0.71 -7.36 16 21 N -0.05 -1.05 13.35 37.02 0.49 -0.56 16 22 N -0.36 -5.67 5.28 -48.52 -0.26 -5.92 16 23 H 0.46 4.10 3.76 -219.90 -0.83 3.27 16 24 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.38 20.61 7.67 -92.71 -0.71 19.90 16 26 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 3.12 7.87 -2.38 -0.02 3.10 16 29 H 0.07 2.51 7.40 -2.39 -0.02 2.50 16 30 H 0.12 1.74 8.02 -2.38 -0.02 1.72 16 31 H 0.11 1.03 5.11 -2.39 -0.01 1.02 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.04 0.45 6.66 -2.38 -0.02 0.44 16 34 H 0.40 2.47 9.12 -74.06 -0.68 1.80 16 35 H 0.22 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -77.85 301.81 -0.06 -77.91 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -1.05 Total: 20.48 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 5.15 Total: 14.27 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -4.13 Total: -130.20 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -2.06 Total: -30.78 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -77.85 -0.06 -77.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717054703.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.711 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds