Wall clock time and date at job start Mon Mar 30 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.46924 * 294.99549 * 12 11 10 14 14 C 1.52999 * 109.47227 * 174.99705 * 12 11 10 15 15 O 1.42899 * 109.47374 * 304.99745 * 14 12 11 16 16 N 1.46494 * 109.47599 * 54.99399 * 12 11 10 17 17 C 1.36935 * 120.00257 * 205.00073 * 16 12 11 18 18 H 1.07994 * 120.00293 * 0.02562 * 17 16 12 19 19 C 1.38814 * 119.99900 * 179.97438 * 17 16 12 20 20 N 1.31619 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46969 * 120.00031 * 21 19 17 24 24 H 1.48499 * 109.47199 * 240.00208 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 28 28 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 29 29 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 30 30 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 31 31 H 1.09006 * 109.47285 * 64.99870 * 14 12 11 32 32 H 1.09002 * 109.47318 * 184.99601 * 14 12 11 33 33 H 0.96694 * 114.00473 * 180.02562 * 15 14 12 34 34 H 0.97006 * 120.00205 * 25.00074 * 16 12 11 35 35 H 0.97005 * 119.99833 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.7009 -5.7775 0.0318 13 1 4.2494 -5.6394 -0.9000 14 6 3.2824 -7.2431 0.1647 15 8 2.4649 -7.4017 1.3260 16 7 4.5576 -5.4100 1.1618 17 6 5.9026 -5.6621 1.1117 18 1 6.3319 -6.1315 0.2391 19 6 6.7145 -5.3133 2.1823 20 7 6.1914 -4.7407 3.2457 21 14 8.5492 -5.6579 2.1143 22 1 8.8839 -6.3040 0.8198 23 1 9.2976 -4.3811 2.2378 24 1 8.9248 -6.5619 3.2309 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 3.7997 -3.2468 0.0187 29 1 1.8599 -5.0928 0.9170 30 1 1.8616 -5.1020 -0.8630 31 1 2.7192 -7.5419 -0.7195 32 1 4.1708 -7.8677 0.2577 33 1 2.1626 -8.3083 1.4735 34 1 4.1722 -4.9879 1.9456 35 1 6.7587 -4.4973 3.9940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725548547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:46 Heat of formation + Delta-G solvation = 15.293090 kcal Electronic energy + Delta-G solvation = -20611.272435 eV Core-core repulsion = 17260.839748 eV Total energy + Delta-G solvation = -3350.432687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.33820 -39.41522 -37.25763 -35.15720 -34.17152 -33.46070 -32.40096 -31.42023 -28.68206 -27.79420 -25.60736 -23.99721 -23.66841 -21.92007 -20.56090 -20.19655 -18.78396 -17.68554 -16.73014 -16.50431 -16.46082 -15.90819 -15.12170 -14.71406 -14.26978 -13.82292 -13.72819 -13.49709 -13.22150 -13.07496 -12.98026 -12.68853 -12.14585 -11.86574 -11.57431 -11.17192 -11.02041 -10.97080 -10.72533 -10.54429 -10.19601 -10.04436 -9.90870 -9.48418 -9.32562 -9.12636 -8.85384 -7.19287 -5.95493 -3.27088 0.92633 2.27568 2.48425 3.11470 3.20324 3.29694 3.35696 3.38702 4.28434 4.40273 4.63267 4.80766 4.90360 5.06633 5.25711 5.34709 5.41750 5.65027 5.69150 5.74204 5.86628 5.87113 5.90337 6.14767 6.27171 6.36648 6.55429 6.57083 6.64096 7.50195 7.53849 8.09388 8.15222 8.21239 8.27961 9.33791 9.87363 10.23652 11.25671 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.005731 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.743869 B = 4884.445647 C = 6230.920917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.053 3.947 3 N -0.275 5.275 4 N -0.048 5.048 5 N -0.369 5.369 6 H 0.455 0.545 7 C -0.064 4.064 8 C 0.591 3.409 9 O -0.524 6.524 10 N -0.706 5.706 11 C 0.119 3.881 12 C 0.164 3.836 13 H 0.067 0.933 14 C 0.060 3.940 15 O -0.561 6.561 16 N -0.715 5.715 17 C -0.253 4.253 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.924 5.924 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.404 0.596 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.365 0.635 34 H 0.389 0.611 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 1.930 -8.324 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.142 5.142 4 N -0.029 5.029 5 N -0.096 5.096 6 H 0.303 0.697 7 C -0.199 4.199 8 C 0.374 3.626 9 O -0.399 6.399 10 N -0.357 5.357 11 C -0.005 4.005 12 C 0.053 3.947 13 H 0.085 0.915 14 C -0.022 4.022 15 O -0.364 6.364 16 N -0.357 5.357 17 C -0.384 4.384 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.240 0.760 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.210 0.790 34 H 0.223 0.777 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.715 3.675 -8.309 11.920 hybrid contribution 1.575 -2.056 0.316 2.609 sum -6.141 1.619 -7.993 10.209 Atomic orbital electron populations 1.20288 0.84962 1.04349 1.03556 1.22290 0.98549 0.87019 1.00852 1.74911 0.95281 1.26086 1.17882 1.78166 1.15875 0.92457 1.16440 1.45544 1.09161 1.06925 1.48011 0.69712 1.22189 0.84970 0.96748 1.15950 1.16710 0.86092 0.82165 0.77593 1.90800 1.16535 1.81963 1.50605 1.45895 1.09676 1.06852 1.73254 1.21670 0.97892 0.78319 1.02639 1.20616 0.90091 0.90445 0.93535 0.91544 1.23009 0.93100 1.00000 0.86061 1.86555 1.70433 1.32279 1.47143 1.42409 1.04231 1.72200 1.16810 1.19258 0.83528 1.34261 1.01303 0.91042 1.24766 0.98120 1.01103 0.96329 1.69683 1.34584 1.46219 1.06661 0.86161 0.85333 0.77526 0.77328 1.20542 1.21777 1.21756 0.90190 0.88715 0.90483 0.75993 0.89964 0.91453 0.95402 0.93216 0.78982 0.77701 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.94 36.01 0.36 -0.50 16 2 C 0.05 0.78 7.29 -82.39 -0.60 0.17 16 3 N -0.27 -4.31 12.35 33.51 0.41 -3.90 16 4 N -0.05 -0.72 13.35 60.35 0.81 0.08 16 5 N -0.37 -4.92 6.97 33.31 0.23 -4.69 16 6 H 0.46 4.94 8.32 -190.33 -1.58 3.36 16 7 C -0.06 -0.94 7.17 -82.33 -0.59 -1.53 16 8 C 0.59 9.22 7.81 -12.61 -0.10 9.12 16 9 O -0.52 -9.15 14.98 5.26 0.08 -9.07 16 10 N -0.71 -10.64 5.38 -61.45 -0.33 -10.97 16 11 C 0.12 1.87 5.12 -4.04 -0.02 1.85 16 12 C 0.16 2.82 2.84 -67.94 -0.19 2.62 16 13 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 14 C 0.06 0.94 6.86 37.16 0.25 1.20 16 15 O -0.56 -9.25 12.64 -35.23 -0.45 -9.70 16 16 N -0.71 -15.70 4.51 -53.43 -0.24 -15.94 16 17 C -0.25 -6.22 9.93 -15.06 -0.15 -6.37 16 18 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -26.06 13.06 55.49 0.72 -25.34 16 21 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.19 6.60 -51.93 -0.34 0.85 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.40 5.91 7.40 -40.82 -0.30 5.61 16 29 H 0.08 1.48 7.40 -51.92 -0.38 1.10 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.37 4.27 9.12 45.56 0.42 4.69 16 34 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -31.30 308.13 -4.87 -36.17 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.14 Total: 6.31 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 1.60 Total: -60.76 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.37 Total: -18.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.30 -4.87 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725548547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.464 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds