Wall clock time and date at job start Mon Mar 30 2020 01:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.46924 * 294.99549 * 12 11 10 14 14 C 1.52999 * 109.47227 * 174.99705 * 12 11 10 15 15 O 1.42899 * 109.47374 * 304.99745 * 14 12 11 16 16 N 1.46494 * 109.47599 * 54.99399 * 12 11 10 17 17 C 1.36935 * 120.00257 * 205.00073 * 16 12 11 18 18 H 1.07994 * 120.00293 * 0.02562 * 17 16 12 19 19 C 1.38814 * 119.99900 * 179.97438 * 17 16 12 20 20 N 1.31619 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46969 * 120.00031 * 21 19 17 24 24 H 1.48499 * 109.47199 * 240.00208 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 28 28 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 29 29 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 30 30 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 31 31 H 1.09006 * 109.47285 * 64.99870 * 14 12 11 32 32 H 1.09002 * 109.47318 * 184.99601 * 14 12 11 33 33 H 0.96694 * 114.00473 * 180.02562 * 15 14 12 34 34 H 0.97006 * 120.00205 * 25.00074 * 16 12 11 35 35 H 0.97005 * 119.99833 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.7009 -5.7775 0.0318 13 1 4.2494 -5.6394 -0.9000 14 6 3.2824 -7.2431 0.1647 15 8 2.4649 -7.4017 1.3260 16 7 4.5576 -5.4100 1.1618 17 6 5.9026 -5.6621 1.1117 18 1 6.3319 -6.1315 0.2391 19 6 6.7145 -5.3133 2.1823 20 7 6.1914 -4.7407 3.2457 21 14 8.5492 -5.6579 2.1143 22 1 8.8839 -6.3040 0.8198 23 1 9.2976 -4.3811 2.2378 24 1 8.9248 -6.5619 3.2309 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 3.7997 -3.2468 0.0187 29 1 1.8599 -5.0928 0.9170 30 1 1.8616 -5.1020 -0.8630 31 1 2.7192 -7.5419 -0.7195 32 1 4.1708 -7.8677 0.2577 33 1 2.1626 -8.3083 1.4735 34 1 4.1722 -4.9879 1.9456 35 1 6.7587 -4.4973 3.9940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725548547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:46 Heat of formation + Delta-G solvation = -12.317745 kcal Electronic energy + Delta-G solvation = -20612.469731 eV Core-core repulsion = 17260.839748 eV Total energy + Delta-G solvation = -3351.629983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.48600 -40.69214 -38.62049 -36.47550 -35.55766 -34.82636 -33.62602 -32.98495 -30.23312 -28.92544 -26.84006 -25.68703 -25.01184 -23.09027 -21.81338 -21.51829 -20.00844 -19.34488 -18.14928 -17.76013 -17.61997 -17.20999 -16.61743 -16.09511 -15.81329 -15.27067 -15.00565 -14.79252 -14.66502 -14.38662 -13.99514 -13.70732 -13.66343 -13.07375 -12.98708 -12.78830 -12.67234 -12.31130 -12.22908 -11.88257 -11.75628 -11.67650 -11.30724 -10.99257 -10.70672 -10.49783 -10.09291 -9.02776 -7.92869 -5.21747 -0.23846 1.11041 1.39473 1.48072 1.50897 1.58517 1.89190 1.99287 2.55803 3.18397 3.40187 3.51039 3.62291 3.76462 3.89162 3.94569 4.01798 4.43298 4.57244 4.62064 4.63705 4.78624 4.83835 4.94626 5.00218 5.21694 5.26306 5.35501 5.55110 5.57494 6.26255 6.30343 6.90733 7.08364 7.11975 7.35333 8.07464 8.31871 9.29656 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.005731 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.743869 B = 4884.445647 C = 6230.920917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.051 3.949 3 N -0.292 5.292 4 N -0.057 5.057 5 N -0.354 5.354 6 H 0.464 0.536 7 C -0.073 4.073 8 C 0.596 3.404 9 O -0.543 6.543 10 N -0.702 5.702 11 C 0.129 3.871 12 C 0.159 3.841 13 H 0.084 0.916 14 C 0.064 3.936 15 O -0.584 6.584 16 N -0.723 5.723 17 C -0.233 4.233 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.263 1.263 23 H -0.297 1.297 24 H -0.304 1.304 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.407 0.593 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.386 0.614 34 H 0.373 0.627 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 1.350 -9.986 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 N -0.159 5.159 4 N -0.039 5.039 5 N -0.084 5.084 6 H 0.314 0.686 7 C -0.208 4.208 8 C 0.380 3.620 9 O -0.419 6.419 10 N -0.353 5.353 11 C 0.005 3.995 12 C 0.050 3.950 13 H 0.101 0.899 14 C -0.017 4.017 15 O -0.391 6.391 16 N -0.363 5.363 17 C -0.365 4.365 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.616 5.616 21 Si 0.794 3.206 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.232 1.232 25 H 0.114 0.886 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.243 0.757 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.234 0.766 34 H 0.204 0.796 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.030 3.053 -10.035 13.210 hybrid contribution 1.584 -1.927 0.763 2.609 sum -6.446 1.126 -9.272 11.349 Atomic orbital electron populations 1.20376 0.83206 1.04685 1.04681 1.22777 0.99754 0.86630 0.99830 1.74909 0.95527 1.26659 1.18757 1.78125 1.15973 0.93027 1.16737 1.45526 1.09348 1.06547 1.46974 0.68578 1.22096 0.85435 0.96355 1.16868 1.16732 0.85781 0.82444 0.77080 1.90791 1.17249 1.82311 1.51586 1.45836 1.09747 1.06680 1.72989 1.21536 0.97089 0.78260 1.02582 1.20902 0.90089 0.91702 0.92330 0.89874 1.22875 0.93222 0.98171 0.87437 1.86510 1.70500 1.34391 1.47699 1.42516 1.03966 1.72279 1.17540 1.19640 0.84688 1.31410 1.00756 0.89906 1.25415 1.01548 1.02519 0.96604 1.69832 1.35425 1.48903 1.07460 0.85225 0.81389 0.76660 0.77314 1.18770 1.22490 1.23216 0.88585 0.89534 0.88899 0.75695 0.92224 0.89196 0.91430 0.94665 0.76627 0.79552 0.94352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 9.94 71.24 0.71 -0.86 16 2 C 0.05 1.43 7.29 42.04 0.31 1.73 16 3 N -0.29 -8.91 12.35 -47.88 -0.59 -9.50 16 4 N -0.06 -1.68 13.35 37.02 0.49 -1.19 16 5 N -0.35 -9.15 6.97 -48.52 -0.34 -9.49 16 6 H 0.46 9.71 8.32 -219.90 -1.83 7.88 16 7 C -0.07 -2.06 7.17 40.40 0.29 -1.77 16 8 C 0.60 17.92 7.81 86.61 0.68 18.59 16 9 O -0.54 -18.35 14.98 -4.10 -0.06 -18.41 16 10 N -0.70 -20.26 5.38 -466.57 -2.51 -22.77 16 11 C 0.13 3.84 5.12 86.38 0.44 4.28 16 12 C 0.16 5.10 2.84 44.99 0.13 5.23 16 13 H 0.08 2.42 8.08 -2.38 -0.02 2.40 16 14 C 0.06 1.84 6.86 71.98 0.49 2.34 16 15 O -0.58 -18.25 12.64 -148.98 -1.88 -20.13 16 16 N -0.72 -31.06 4.51 -322.96 -1.46 -32.52 16 17 C -0.23 -11.20 9.93 84.03 0.83 -10.37 16 18 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 19 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 20 N -0.97 -55.28 13.06 21.65 0.28 -55.00 16 21 Si 0.96 42.71 29.55 68.60 2.03 44.73 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 2.08 6.60 -2.39 -0.02 2.07 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.41 11.42 7.40 -92.70 -0.69 10.74 16 29 H 0.06 2.09 7.40 -2.38 -0.02 2.07 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.44 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.39 8.25 9.12 -74.06 -0.68 7.57 16 34 H 0.37 18.43 7.80 -92.70 -0.72 17.71 16 35 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -66.07 308.13 -2.43 -68.50 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -2.74 Total: 39.68 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 4.34 Total: 16.09 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -4.12 Total: -130.47 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.94 Total: -38.54 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.07 -2.43 -68.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725548547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.180 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds