Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47594 * 64.99473 * 12 11 10 14 14 C 1.53009 * 109.47146 * 184.99707 * 12 11 10 15 15 O 1.42900 * 109.46896 * 54.99960 * 14 12 11 16 16 N 1.46503 * 109.47013 * 304.99149 * 12 11 10 17 17 C 1.36936 * 119.99873 * 155.00162 * 16 12 11 18 18 H 1.08001 * 120.00061 * 359.97438 * 17 16 12 19 19 C 1.38812 * 119.99860 * 180.02562 * 17 16 12 20 20 N 1.31621 * 120.00349 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47301 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.46954 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47274 * 299.99537 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 28 28 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 29 29 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 30 30 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 31 31 H 1.08998 * 109.47068 * 174.99294 * 14 12 11 32 32 H 1.08996 * 109.46954 * 294.99823 * 14 12 11 33 33 H 0.96705 * 113.99570 * 180.02562 * 15 14 12 34 34 H 0.96998 * 119.99894 * 335.00630 * 16 12 11 35 35 H 0.96995 * 120.00755 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.7009 -5.7775 0.0318 13 1 4.2483 -5.6299 0.9627 14 6 3.2825 -7.2445 -0.0867 15 8 2.4665 -7.4148 -1.2474 16 7 4.5590 -5.4215 -1.1010 17 6 5.9039 -5.6731 -1.0467 18 1 6.3322 -6.1336 -0.1687 19 6 6.7170 -5.3352 -2.1199 20 7 6.1953 -4.7735 -3.1897 21 14 8.5518 -5.6778 -2.0456 22 1 8.7766 -7.1351 -1.8701 23 1 9.1910 -5.2274 -3.3081 24 1 9.1465 -4.9436 -0.8999 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 3.7997 -3.2468 0.0187 29 1 1.8599 -5.0928 0.9170 30 1 1.8616 -5.1020 -0.8630 31 1 4.1710 -7.8700 -0.1724 32 1 2.7183 -7.5342 0.7997 33 1 2.1637 -8.3227 -1.3856 34 1 4.1744 -5.0075 -1.8894 35 1 6.7633 -4.5378 -3.9398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725548557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = 15.458188 kcal Electronic energy + Delta-G solvation = -20611.340571 eV Core-core repulsion = 17260.915044 eV Total energy + Delta-G solvation = -3350.425528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.33741 -39.41383 -37.25483 -35.15489 -34.16935 -33.45827 -32.39981 -31.41782 -28.67957 -27.79271 -25.60574 -23.99403 -23.66420 -21.91876 -20.55965 -20.19400 -18.78236 -17.68282 -16.72726 -16.52137 -16.43921 -15.90579 -15.12492 -14.70668 -14.27152 -13.84231 -13.69821 -13.50826 -13.23162 -13.05925 -12.96860 -12.68507 -12.14809 -11.86539 -11.57621 -11.17226 -11.00849 -10.94436 -10.73631 -10.54117 -10.25296 -10.04134 -9.90015 -9.48101 -9.32376 -9.11329 -8.85212 -7.19205 -5.94838 -3.26621 0.92744 2.27664 2.48507 3.12003 3.20120 3.30101 3.35832 3.37807 4.28465 4.40654 4.63289 4.80984 4.90380 5.06700 5.25945 5.34886 5.41967 5.66756 5.68592 5.74398 5.86795 5.86827 5.90556 6.14965 6.26741 6.36927 6.55558 6.57303 6.64240 7.49366 7.53997 8.09512 8.15348 8.21850 8.28029 9.34184 9.87692 10.24079 11.26188 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.005732 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.787520 B = 4884.030051 C = 6230.764745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.053 3.947 3 N -0.275 5.275 4 N -0.048 5.048 5 N -0.369 5.369 6 H 0.455 0.545 7 C -0.064 4.064 8 C 0.591 3.409 9 O -0.524 6.524 10 N -0.706 5.706 11 C 0.119 3.881 12 C 0.164 3.836 13 H 0.067 0.933 14 C 0.060 3.940 15 O -0.561 6.561 16 N -0.714 5.714 17 C -0.254 4.254 18 H 0.070 0.930 19 C -0.005 4.005 20 N -0.925 5.925 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.404 0.596 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.365 0.635 34 H 0.389 0.611 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 2.042 8.255 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.142 5.142 4 N -0.029 5.029 5 N -0.096 5.096 6 H 0.303 0.697 7 C -0.199 4.199 8 C 0.374 3.626 9 O -0.399 6.399 10 N -0.357 5.357 11 C -0.005 4.005 12 C 0.053 3.947 13 H 0.085 0.915 14 C -0.022 4.022 15 O -0.364 6.364 16 N -0.356 5.356 17 C -0.385 4.385 18 H 0.088 0.912 19 C -0.202 4.202 20 N -0.572 5.572 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.240 0.760 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.210 0.790 34 H 0.223 0.777 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.699 3.794 8.217 11.882 hybrid contribution 1.577 -2.072 -0.319 2.623 sum -6.122 1.722 7.898 10.140 Atomic orbital electron populations 1.20288 0.84962 1.04158 1.03745 1.22290 0.98549 0.87022 1.00841 1.74911 0.95281 1.26083 1.17893 1.78166 1.15875 0.92459 1.16444 1.45544 1.09164 1.06923 1.48003 0.69706 1.22188 0.84970 0.96746 1.15964 1.16710 0.86091 0.82165 0.77591 1.90800 1.16535 1.81972 1.50605 1.45896 1.09677 1.06848 1.73254 1.21669 0.97889 0.78316 1.02647 1.20617 0.90080 0.90460 0.93530 0.91549 1.23010 0.93118 0.99987 0.86062 1.86559 1.70505 1.32261 1.47082 1.42394 1.04184 1.72848 1.16197 1.19169 0.83544 1.34856 1.00924 0.91156 1.24761 0.98107 1.01117 0.96262 1.69657 1.34815 1.46512 1.06211 0.86298 0.85178 0.77987 0.76810 1.21222 1.21630 1.21187 0.90058 0.88788 0.90539 0.75991 0.91449 0.89969 0.93217 0.95404 0.78986 0.77698 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.94 36.01 0.36 -0.50 16 2 C 0.05 0.78 7.29 -82.39 -0.60 0.18 16 3 N -0.28 -4.31 12.35 33.51 0.41 -3.90 16 4 N -0.05 -0.72 13.35 60.35 0.81 0.08 16 5 N -0.37 -4.92 6.97 33.31 0.23 -4.69 16 6 H 0.46 4.96 8.32 -190.33 -1.58 3.37 16 7 C -0.06 -0.94 7.17 -82.33 -0.59 -1.53 16 8 C 0.59 9.22 7.81 -12.61 -0.10 9.13 16 9 O -0.52 -9.16 14.98 5.26 0.08 -9.08 16 10 N -0.71 -10.66 5.38 -61.45 -0.33 -10.99 16 11 C 0.12 1.87 5.12 -4.04 -0.02 1.85 16 12 C 0.16 2.82 2.84 -67.93 -0.19 2.63 16 13 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 14 C 0.06 0.95 6.86 37.16 0.25 1.20 16 15 O -0.56 -9.27 12.64 -35.23 -0.45 -9.71 16 16 N -0.71 -15.71 4.51 -53.42 -0.24 -15.95 16 17 C -0.25 -6.26 9.93 -15.06 -0.15 -6.41 16 18 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 20 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 21 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 1.14 6.60 -51.93 -0.34 0.80 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.40 5.93 7.40 -40.82 -0.30 5.62 16 29 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.08 1.48 7.39 -51.93 -0.38 1.10 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.37 4.28 9.12 45.56 0.42 4.70 16 34 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -31.24 308.12 -4.87 -36.12 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.76 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.14 Total: 6.31 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 1.60 Total: -60.80 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.37 Total: -18.79 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.24 -4.87 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725548557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.574 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds