Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33319 * 126.81212 * 2 1 4 4 N 1.28513 * 109.43697 * 179.97438 * 3 2 1 5 5 N 1.28706 * 110.64086 * 359.97438 * 4 3 2 6 6 H 0.97005 * 126.04198 * 180.02562 * 5 4 3 7 7 C 1.37000 * 126.81306 * 179.67779 * 2 1 3 8 8 C 1.47231 * 127.19089 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00097 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00257 * 180.02562 * 8 7 2 11 11 C 1.46500 * 120.00458 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47410 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47594 * 64.99473 * 12 11 10 14 14 C 1.53009 * 109.47146 * 184.99707 * 12 11 10 15 15 O 1.42900 * 109.46896 * 54.99960 * 14 12 11 16 16 N 1.46503 * 109.47013 * 304.99149 * 12 11 10 17 17 C 1.36936 * 119.99873 * 155.00162 * 16 12 11 18 18 H 1.08001 * 120.00061 * 359.97438 * 17 16 12 19 19 C 1.38812 * 119.99860 * 180.02562 * 17 16 12 20 20 N 1.31621 * 120.00349 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47301 * 60.00186 * 21 19 17 23 23 H 1.48505 * 109.46954 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47274 * 299.99537 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.02796 * 1 2 3 26 26 H 1.09000 * 109.47318 * 210.02394 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.03025 * 1 2 3 28 28 H 0.97007 * 119.99976 * 359.97438 * 10 8 7 29 29 H 1.09008 * 109.46603 * 299.99251 * 11 10 8 30 30 H 1.09003 * 109.47132 * 59.98830 * 11 10 8 31 31 H 1.08998 * 109.47068 * 174.99294 * 14 12 11 32 32 H 1.08996 * 109.46954 * 294.99823 * 14 12 11 33 33 H 0.96705 * 113.99570 * 180.02562 * 15 14 12 34 34 H 0.96998 * 119.99894 * 335.00630 * 16 12 11 35 35 H 0.96995 * 120.00755 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 0.0005 5 7 3.6057 -0.6014 0.0015 6 1 4.4213 -1.1265 0.0023 7 6 2.3280 -1.0968 0.0062 8 6 1.9222 -2.5121 0.0136 9 8 0.7422 -2.8064 0.0152 10 7 2.8585 -3.4815 0.0197 11 6 2.4548 -4.8898 0.0265 12 6 3.7009 -5.7775 0.0318 13 1 4.2483 -5.6299 0.9627 14 6 3.2825 -7.2445 -0.0867 15 8 2.4665 -7.4148 -1.2474 16 7 4.5590 -5.4215 -1.1010 17 6 5.9039 -5.6731 -1.0467 18 1 6.3322 -6.1336 -0.1687 19 6 6.7170 -5.3352 -2.1199 20 7 6.1953 -4.7735 -3.1897 21 14 8.5518 -5.6778 -2.0456 22 1 8.7766 -7.1351 -1.8701 23 1 9.1910 -5.2274 -3.3081 24 1 9.1465 -4.9436 -0.8999 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 3.7997 -3.2468 0.0187 29 1 1.8599 -5.0928 0.9170 30 1 1.8616 -5.1020 -0.8630 31 1 4.1710 -7.8700 -0.1724 32 1 2.7183 -7.5342 0.7997 33 1 2.1637 -8.3227 -1.3856 34 1 4.1744 -5.0075 -1.8894 35 1 6.7633 -4.5378 -3.9398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725548557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -12.087340 kcal Electronic energy + Delta-G solvation = -20612.535035 eV Core-core repulsion = 17260.915044 eV Total energy + Delta-G solvation = -3351.619991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.48607 -40.69222 -38.61914 -36.47467 -35.55527 -34.82537 -33.62561 -32.98369 -30.23078 -28.92521 -26.84032 -25.68010 -25.01114 -23.09007 -21.81310 -21.51733 -20.00802 -19.34145 -18.14760 -17.76638 -17.61046 -17.20949 -16.61991 -16.09630 -15.81274 -15.26028 -15.01286 -14.79231 -14.66054 -14.38820 -13.99608 -13.68500 -13.67812 -13.04867 -12.98700 -12.76110 -12.64387 -12.31000 -12.30314 -11.92355 -11.75175 -11.67418 -11.30583 -10.96520 -10.70606 -10.49830 -10.09289 -9.02533 -7.92209 -5.21278 -0.23870 1.10989 1.39427 1.49868 1.51313 1.57099 1.89626 1.98836 2.56316 3.18406 3.40309 3.51010 3.62313 3.76526 3.89332 3.94700 4.01809 4.43361 4.57243 4.62030 4.63625 4.78136 4.83895 4.94973 5.00243 5.21778 5.26248 5.35375 5.54656 5.57451 6.26488 6.30319 6.90679 7.08184 7.11962 7.35652 8.07842 8.32398 9.29879 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.005732 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.787520 B = 4884.030051 C = 6230.764745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.051 3.949 3 N -0.292 5.292 4 N -0.057 5.057 5 N -0.354 5.354 6 H 0.464 0.536 7 C -0.073 4.073 8 C 0.596 3.404 9 O -0.543 6.543 10 N -0.702 5.702 11 C 0.129 3.871 12 C 0.159 3.841 13 H 0.083 0.917 14 C 0.064 3.936 15 O -0.584 6.584 16 N -0.723 5.723 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.966 5.966 21 Si 0.964 3.036 22 H -0.284 1.284 23 H -0.305 1.305 24 H -0.274 1.274 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.407 0.593 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.386 0.614 34 H 0.373 0.627 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 1.498 9.832 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 N -0.158 5.158 4 N -0.039 5.039 5 N -0.084 5.084 6 H 0.314 0.686 7 C -0.208 4.208 8 C 0.380 3.620 9 O -0.419 6.419 10 N -0.352 5.352 11 C 0.005 3.995 12 C 0.050 3.950 13 H 0.101 0.899 14 C -0.017 4.017 15 O -0.391 6.391 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.616 5.616 21 Si 0.795 3.205 22 H -0.210 1.210 23 H -0.232 1.232 24 H -0.200 1.200 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.243 0.757 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.205 0.795 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.988 3.211 9.856 13.087 hybrid contribution 1.582 -1.956 -0.738 2.621 sum -6.406 1.255 9.118 11.214 Atomic orbital electron populations 1.20378 0.83211 1.04922 1.04452 1.22776 0.99752 0.86632 0.99832 1.74909 0.95528 1.26657 1.18752 1.78125 1.15971 0.93022 1.16735 1.45526 1.09349 1.06550 1.46970 0.68577 1.22096 0.85437 0.96353 1.16865 1.16733 0.85781 0.82444 0.77076 1.90790 1.17247 1.82320 1.51586 1.45836 1.09748 1.06674 1.72989 1.21536 0.97086 0.78250 1.02594 1.20901 0.90077 0.91726 0.92318 0.89892 1.22875 0.93228 0.98152 0.87448 1.86513 1.70570 1.34368 1.47641 1.42498 1.03924 1.72939 1.16924 1.19566 0.84714 1.32052 1.00456 0.89971 1.25416 1.01572 1.02508 0.96500 1.69814 1.35600 1.49216 1.06964 0.85357 0.81255 0.77715 0.76213 1.21020 1.23238 1.20023 0.89276 0.89137 0.88606 0.75696 0.89190 0.92225 0.94703 0.91427 0.76631 0.79550 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.94 71.24 0.71 -0.87 16 2 C 0.05 1.43 7.29 42.04 0.31 1.73 16 3 N -0.29 -8.90 12.35 -47.88 -0.59 -9.49 16 4 N -0.06 -1.68 13.35 37.02 0.49 -1.19 16 5 N -0.35 -9.16 6.97 -48.52 -0.34 -9.50 16 6 H 0.46 9.73 8.32 -219.90 -1.83 7.90 16 7 C -0.07 -2.06 7.17 40.40 0.29 -1.77 16 8 C 0.60 17.93 7.81 86.61 0.68 18.61 16 9 O -0.54 -18.35 14.98 -4.10 -0.06 -18.41 16 10 N -0.70 -20.29 5.38 -466.57 -2.51 -22.80 16 11 C 0.13 3.85 5.12 86.38 0.44 4.29 16 12 C 0.16 5.11 2.84 44.99 0.13 5.24 16 13 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 14 C 0.06 1.85 6.86 71.99 0.49 2.34 16 15 O -0.58 -18.29 12.64 -148.98 -1.88 -20.17 16 16 N -0.72 -31.11 4.51 -322.93 -1.46 -32.57 16 17 C -0.24 -11.36 9.93 84.03 0.83 -10.53 16 18 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 20 N -0.97 -55.26 13.06 21.65 0.28 -54.97 16 21 Si 0.96 42.66 29.55 68.60 2.03 44.69 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.31 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 26 H 0.09 2.08 6.60 -2.39 -0.02 2.07 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.41 11.45 7.40 -92.70 -0.69 10.76 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.06 2.09 7.39 -2.39 -0.02 2.07 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.39 8.28 9.12 -74.05 -0.68 7.60 16 34 H 0.37 18.45 7.80 -92.71 -0.72 17.72 16 35 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -65.88 308.12 -2.43 -68.31 By element: Atomic # 1 Polarization: 42.83 SS G_CDS: -2.74 Total: 40.10 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 4.34 Total: 16.02 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -4.12 Total: -130.52 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.94 Total: -38.59 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.88 -2.43 -68.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725548557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.223 kcal (2) G-P(sol) polarization free energy of solvation -65.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds