Wall clock time and date at job start Mon Mar 30 2020 00:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99960 * 2 1 4 4 C 1.53005 * 109.47066 * 269.99859 * 3 2 1 5 5 H 1.09002 * 109.47000 * 305.00214 * 4 3 2 6 6 O 1.42895 * 109.47042 * 64.99897 * 4 3 2 7 7 C 1.52996 * 109.47266 * 184.99916 * 4 3 2 8 8 N 1.46500 * 109.47522 * 180.02562 * 7 4 3 9 9 C 1.36934 * 120.00301 * 180.02562 * 8 7 4 10 10 H 1.08000 * 119.99867 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00179 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00253 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 120.00002 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47040 * 89.99527 * 13 11 9 15 15 H 1.48497 * 109.47253 * 209.99830 * 13 11 9 16 16 H 1.48499 * 109.47029 * 329.99979 * 13 11 9 17 17 C 1.34779 * 120.00411 * 179.97438 * 2 1 3 18 18 O 1.21603 * 120.00154 * 183.38128 * 17 2 1 19 19 C 1.47420 * 119.99604 * 3.38671 * 17 2 1 20 20 C 1.36085 * 126.45026 * 173.47170 * 19 17 2 21 21 O 1.34256 * 106.95438 * 179.97438 * 20 19 17 22 22 C 1.34052 * 108.22263 * 359.97438 * 21 20 19 23 23 N 1.29926 * 109.24574 * 0.26283 * 22 21 20 24 24 H 1.08996 * 109.47317 * 264.08878 * 1 2 3 25 25 H 1.09001 * 109.47353 * 24.09066 * 1 2 3 26 26 H 1.09003 * 109.47105 * 144.08730 * 1 2 3 27 27 H 1.09002 * 109.47111 * 29.99694 * 3 2 1 28 28 H 1.08995 * 109.47266 * 149.99836 * 3 2 1 29 29 H 0.96701 * 114.00539 * 60.00114 * 6 4 3 30 30 H 1.09002 * 109.47354 * 300.00081 * 7 4 3 31 31 H 1.09006 * 109.46995 * 59.99657 * 7 4 3 32 32 H 0.96997 * 119.99599 * 359.97438 * 8 7 4 33 33 H 0.97003 * 119.99807 * 180.02562 * 12 11 9 34 34 H 1.08001 * 126.52368 * 359.96537 * 20 19 17 35 35 H 1.08001 * 125.37551 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9816 6 8 1.2061 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5675 3.3914 -2.8256 9 6 4.3283 4.5017 -3.0774 10 1 4.7484 5.0656 -2.2577 11 6 4.5597 4.9024 -4.3860 12 7 5.2906 5.9700 -4.6280 13 14 3.8337 3.9266 -5.8039 14 1 2.4907 4.4649 -6.1388 15 1 4.7218 4.0395 -6.9886 16 1 3.7111 2.4997 -5.4112 17 6 2.1390 -1.1672 0.0005 18 8 3.3534 -1.1680 0.0626 19 6 1.4038 -2.4428 -0.0743 20 6 1.9480 -3.6830 -0.2073 21 8 0.9291 -4.5569 -0.2333 22 6 -0.2159 -3.8693 -0.1184 23 7 0.0531 -2.6014 -0.0276 24 1 -0.3634 -0.1058 1.0221 25 1 -0.3634 0.9382 -0.4195 26 1 -0.3633 -0.8323 -0.6028 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 0.6955 2.6949 -1.6544 30 1 2.8121 3.7654 -0.9054 31 1 4.2746 2.7521 -0.9570 32 1 3.1905 2.8846 -3.5618 33 1 5.4519 6.2501 -5.5426 34 1 2.9994 -3.9193 -0.2784 35 1 -1.2059 -4.3008 -0.1073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725689999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:04 Heat of formation + Delta-G solvation = -60.424841 kcal Electronic energy + Delta-G solvation = -20418.922675 eV Core-core repulsion = 17032.913861 eV Total energy + Delta-G solvation = -3386.008814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.39884 -40.96827 -38.92594 -36.63437 -36.05608 -35.57231 -33.52140 -31.72035 -31.01965 -28.04918 -27.35262 -25.08655 -23.86345 -23.46342 -22.78151 -20.98366 -19.83561 -18.86548 -17.97351 -17.72654 -17.57279 -17.05148 -16.61456 -16.50033 -16.28895 -15.72762 -15.41252 -15.05845 -14.77602 -14.44209 -14.37489 -13.89937 -13.78751 -13.47667 -13.26336 -12.86593 -12.67033 -12.41806 -12.30746 -12.01259 -11.87692 -11.56935 -11.43696 -11.05153 -10.96613 -10.24380 -9.58660 -9.34304 -8.06477 -5.39601 0.08910 1.07511 1.36331 1.37894 1.45936 1.69028 1.94957 2.19302 2.45210 3.04708 3.24249 3.33292 3.57535 3.70598 3.87936 3.95655 4.05877 4.22003 4.44195 4.50958 4.53803 4.61066 4.68269 4.83664 4.89334 4.99507 5.12735 5.33479 5.53460 5.70844 6.17438 6.19569 6.49419 6.82608 6.97105 7.04346 7.80473 7.99067 9.14911 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.003932 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.173520 B = 7119.934340 C = 7293.651182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.590 5.590 3 C 0.093 3.907 4 C 0.102 3.898 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.126 3.874 8 N -0.755 5.755 9 C -0.237 4.237 10 H 0.061 0.939 11 C -0.060 4.060 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.265 1.265 17 C 0.585 3.415 18 O -0.576 6.576 19 C -0.101 4.101 20 C 0.025 3.975 21 O -0.197 6.197 22 C 0.197 3.803 23 N -0.488 5.488 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.388 0.612 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.245 0.755 35 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 -22.757 12.639 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.320 5.320 3 C -0.030 4.030 4 C 0.041 3.959 5 H 0.089 0.911 6 O -0.370 6.370 7 C -0.001 4.001 8 N -0.401 5.401 9 C -0.368 4.368 10 H 0.079 0.921 11 C -0.252 4.252 12 N -0.632 5.632 13 Si 0.784 3.216 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.190 1.190 17 C 0.374 3.626 18 O -0.457 6.457 19 C -0.219 4.219 20 C -0.049 4.049 21 O -0.083 6.083 22 C -0.032 4.032 23 N -0.217 5.217 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.137 0.863 28 H 0.104 0.896 29 H 0.237 0.763 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.199 0.801 33 H 0.068 0.932 34 H 0.261 0.739 35 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges -16.337 -22.551 12.418 30.490 hybrid contribution 0.460 -0.021 -0.739 0.871 sum -15.877 -22.572 11.678 29.966 Atomic orbital electron populations 1.22282 0.76255 1.04750 1.02824 1.47628 1.09003 1.04619 1.70712 1.22152 0.99215 0.85545 0.96124 1.22235 0.84664 0.95445 0.93520 0.91104 1.86555 1.32018 1.60217 1.58168 1.21415 0.97600 0.95098 0.85969 1.42610 1.62350 1.31485 1.03640 1.19078 1.22819 1.01952 0.92931 0.92106 1.25454 1.00979 0.98949 0.99820 1.69873 1.45217 1.28035 1.20047 0.85389 0.78002 0.79053 0.79149 1.20057 1.21895 1.19036 1.17324 0.85838 0.83268 0.76215 1.90810 1.14302 1.87578 1.53013 1.21570 0.90849 0.94985 1.14467 1.25611 0.94756 0.86360 0.98214 1.84491 1.16147 1.39239 1.68383 1.29403 0.92371 0.85013 0.96365 1.70903 1.12384 1.19215 1.19202 0.91948 0.90076 0.88533 0.86317 0.89568 0.76291 0.93436 0.95144 0.80078 0.93193 0.73917 0.68178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 9.37 127.77 1.20 2.71 16 2 N -0.59 -14.60 2.84 -850.66 -2.41 -17.02 16 3 C 0.09 2.31 5.06 86.38 0.44 2.75 16 4 C 0.10 3.21 3.30 30.59 0.10 3.31 16 5 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 6 O -0.56 -16.58 12.02 -148.98 -1.79 -18.37 16 7 C 0.13 4.84 5.92 86.38 0.51 5.35 16 8 N -0.75 -37.23 5.30 -343.46 -1.82 -39.05 16 9 C -0.24 -14.02 10.47 84.03 0.88 -13.14 16 10 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 11 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 12 N -0.98 -64.29 13.97 21.65 0.30 -63.99 16 13 Si 0.96 48.06 27.74 68.60 1.90 49.97 16 14 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 16 H -0.27 -12.65 6.52 99.48 0.65 -12.00 16 17 C 0.58 16.59 7.67 86.66 0.66 17.26 16 18 O -0.58 -20.00 16.45 -4.04 -0.07 -20.07 16 19 C -0.10 -2.22 6.66 40.40 0.27 -1.95 16 20 C 0.03 0.42 11.95 67.32 0.80 1.23 16 21 O -0.20 -2.46 10.73 0.36 0.00 -2.46 16 22 C 0.20 1.81 13.19 130.52 1.72 3.53 16 23 N -0.49 -8.36 7.86 -305.16 -2.40 -10.76 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.32 7.24 -2.39 -0.02 1.30 16 26 H 0.10 1.93 5.31 -2.39 -0.01 1.92 16 27 H 0.12 2.15 8.07 -2.39 -0.02 2.13 16 28 H 0.09 2.37 7.38 -2.39 -0.02 2.36 16 29 H 0.39 8.33 9.04 -74.06 -0.67 7.66 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.37 17.97 5.40 -92.71 -0.50 17.46 16 33 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.24 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.30 -0.89 8.06 -2.91 -0.02 -0.92 16 Total: -1.00 -82.50 304.23 0.68 -81.82 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.09 Total: 22.09 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 7.05 Total: 17.83 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -6.33 Total: -130.81 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.85 Total: -40.90 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.90 Total: 49.97 kcal Total: -82.50 0.68 -81.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725689999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.394 kcal (2) G-P(sol) polarization free energy of solvation -82.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds