Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 110.91537 * 2 1 4 4 O 1.20828 * 120.00161 * 117.54913 * 3 2 1 5 5 O 1.34227 * 120.00330 * 297.54986 * 3 2 1 6 6 C 1.55157 * 111.00718 * 236.09747 * 2 1 3 7 7 C 1.54321 * 103.10033 * 277.51661 * 6 2 1 8 8 N 1.47019 * 107.27531 * 337.71659 * 7 6 2 9 9 C 1.34777 * 125.65068 * 178.90607 * 8 7 6 10 10 O 1.21282 * 119.99780 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99856 * 0.02562 * 9 8 7 12 12 C 1.52999 * 109.46820 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47129 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99832 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99944 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99973 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47138 * 60.00188 * 18 16 14 20 20 H 1.48502 * 109.47075 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47061 * 299.99877 * 18 16 14 22 22 C 1.47431 * 108.70142 * 358.94050 * 8 7 6 23 23 H 1.09002 * 109.47450 * 182.44809 * 1 2 3 24 24 H 1.08995 * 109.47521 * 302.44752 * 1 2 3 25 25 H 1.08998 * 109.47195 * 62.44764 * 1 2 3 26 26 H 0.96698 * 116.99992 * 179.97438 * 5 3 2 27 27 H 1.09002 * 110.72219 * 159.06357 * 6 2 1 28 28 H 1.09003 * 110.71618 * 35.96970 * 6 2 1 29 29 H 1.09001 * 109.88480 * 97.13771 * 7 6 2 30 30 H 1.09004 * 109.87910 * 218.29695 * 7 6 2 31 31 H 1.09003 * 109.47107 * 300.00128 * 11 9 8 32 32 H 1.08999 * 109.47232 * 60.00285 * 11 9 8 33 33 H 1.09003 * 109.47144 * 299.99811 * 12 11 9 34 34 H 1.08999 * 109.47227 * 59.99987 * 12 11 9 35 35 H 1.09003 * 109.47014 * 299.99887 * 13 12 11 36 36 H 1.09002 * 109.47177 * 59.99397 * 13 12 11 37 37 H 0.96997 * 119.99560 * 179.97438 * 17 16 14 38 38 H 1.08999 * 110.36190 * 142.96411 * 22 8 7 39 39 H 1.08998 * 110.36491 * 265.18090 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.7357 1.7993 0.9277 5 8 1.8053 2.2266 -1.0306 6 6 2.0861 -0.8079 -1.2022 7 6 2.0280 -2.2662 -0.7005 8 7 2.0147 -2.2221 0.7689 9 6 1.9466 -3.2916 1.5863 10 8 1.9418 -3.1362 2.7891 11 6 1.8763 -4.6805 1.0055 12 6 1.8065 -5.7046 2.1401 13 6 1.7357 -7.1148 1.5505 14 6 1.6676 -8.1236 2.6680 15 1 1.6737 -7.7921 3.6958 16 6 1.5965 -9.4696 2.3781 17 7 1.5885 -9.8732 1.1264 18 14 1.5113 -10.7201 3.7633 19 1 0.3015 -10.4658 4.5860 20 1 1.4415 -12.0886 3.1910 21 1 2.7226 -10.5998 4.6138 22 6 2.0874 -0.8143 1.2004 23 1 -0.3634 -1.0267 0.0439 24 1 -0.3634 0.5513 0.8672 25 1 -0.3633 0.4753 -0.9111 26 1 2.1716 3.1204 -0.9855 27 1 3.1133 -0.5160 -1.4209 28 1 1.4541 -0.6767 -2.0805 29 1 1.1207 -2.7478 -1.0652 30 1 2.9052 -2.8126 -1.0472 31 1 0.9869 -4.7688 0.3816 32 1 2.7640 -4.8670 0.4013 33 1 2.6956 -5.6164 2.7644 34 1 0.9185 -5.5179 2.7440 35 1 0.8468 -7.2033 0.9259 36 1 2.6239 -7.3011 0.9468 37 1 1.5388 -10.8202 0.9225 38 1 1.4702 -0.6562 2.0847 39 1 3.1205 -0.5329 1.4043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848445501.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -145.521813 kcal Electronic energy + Delta-G solvation = -20454.584987 eV Core-core repulsion = 17168.426435 eV Total energy + Delta-G solvation = -3286.158552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21316 -39.72232 -37.70995 -36.51232 -34.19393 -33.20972 -31.95413 -29.93203 -28.37381 -26.85825 -25.08589 -23.50005 -22.84066 -20.51041 -20.01296 -19.16536 -18.20519 -17.36274 -16.77938 -16.16223 -16.00935 -15.55687 -15.12203 -14.65115 -14.39299 -14.37020 -13.93652 -13.43692 -13.02738 -12.82588 -12.63817 -12.29032 -12.24923 -12.13597 -11.94503 -11.80129 -11.44095 -11.36833 -11.25002 -10.77265 -10.74715 -10.59228 -10.53613 -9.71435 -9.65793 -9.27138 -9.02502 -8.69487 -8.30596 -5.96647 -3.97983 1.75854 2.39994 2.87241 3.09775 3.37702 3.40913 3.45016 3.76195 4.06304 4.33020 4.50257 4.68133 4.77115 4.90842 4.95345 5.21261 5.36974 5.38006 5.39406 5.40244 5.49926 5.55784 5.64260 5.70781 5.76039 5.77370 6.04471 6.15038 6.27713 6.73392 6.93964 7.16619 7.44710 7.51018 7.71822 7.84605 8.04087 8.36675 8.48144 9.08883 9.65910 11.14864 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051630 B = 0.003041 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.188315 B = 9206.016515 C = 9469.259770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C 0.497 3.503 4 O -0.508 6.508 5 O -0.511 6.511 6 C -0.115 4.115 7 C 0.101 3.899 8 N -0.628 5.628 9 C 0.530 3.470 10 O -0.532 6.532 11 C -0.132 4.132 12 C -0.096 4.096 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.127 3.873 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.411 0.589 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 23.413 -9.965 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C 0.339 3.661 4 O -0.395 6.395 5 O -0.323 6.323 6 C -0.153 4.153 7 C -0.022 4.022 8 N -0.365 5.365 9 C 0.321 3.679 10 O -0.407 6.407 11 C -0.172 4.172 12 C -0.134 4.134 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.004 3.996 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.270 0.730 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.864 22.942 -9.110 24.700 hybrid contribution 0.268 -0.032 0.593 0.652 sum -0.596 22.910 -8.516 24.449 Atomic orbital electron populations 1.21753 0.90082 1.04122 1.03191 1.21682 0.98542 0.87966 0.99102 1.22944 0.76631 0.87581 0.78988 1.90763 1.36591 1.76310 1.35810 1.84518 1.72955 1.28581 1.46260 1.22748 1.02507 0.93401 0.96663 1.22049 1.03033 0.96624 0.80512 1.48594 1.75462 1.05645 1.06795 1.21042 0.74650 0.85953 0.86238 1.90699 1.49116 1.86138 1.14765 1.21836 1.03673 0.90092 1.01558 1.21475 1.01730 0.94917 0.95302 1.19119 0.97085 0.89128 0.96214 1.21243 1.50048 0.91199 0.93201 0.92617 1.25015 0.95386 0.98605 0.95473 1.69954 1.51082 1.15369 1.17389 0.86649 0.78708 0.80274 0.82341 1.20229 1.21335 1.20223 1.22071 1.01953 0.80335 0.95220 0.90293 0.91659 0.90763 0.72988 0.89974 0.88403 0.90405 0.90423 0.89327 0.89336 0.92660 0.92655 0.96606 0.96609 0.93019 0.89488 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.56 37.15 0.32 -0.65 16 2 C -0.07 -0.59 0.90 -153.25 -0.14 -0.73 16 3 C 0.50 4.36 6.99 36.01 0.25 4.62 16 4 O -0.51 -6.18 16.59 -18.75 -0.31 -6.49 16 5 O -0.51 -2.95 13.40 -39.25 -0.53 -3.47 16 6 C -0.12 -0.76 5.88 -24.90 -0.15 -0.91 16 7 C 0.10 0.86 6.15 -3.07 -0.02 0.85 16 8 N -0.63 -7.89 3.32 -170.21 -0.56 -8.45 16 9 C 0.53 8.82 7.85 -10.98 -0.09 8.73 16 10 O -0.53 -11.03 16.24 5.56 0.09 -10.94 16 11 C -0.13 -2.19 4.89 -27.88 -0.14 -2.33 16 12 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.13 1.49 5.46 -2.26 -0.01 1.48 16 23 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.41 0.74 9.10 45.56 0.41 1.16 16 27 H 0.08 0.51 8.03 -51.93 -0.42 0.10 16 28 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.09 1.13 7.95 -51.93 -0.41 0.72 16 39 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -35.92 330.31 -6.65 -42.57 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -5.40 Total: -4.31 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.64 Total: -4.59 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.17 Total: -34.82 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.75 Total: -20.91 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.92 -6.65 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848445501.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.952 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds