Wall clock time and date at job start Mon Mar 30 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53005 * 109.47559 * 119.99918 * 2 1 3 5 5 N 1.46500 * 109.47013 * 295.00607 * 4 2 1 6 6 C 1.36934 * 119.99756 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00017 * 179.97438 * 6 5 4 9 9 N 1.31616 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00167 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47380 * 59.99542 * 10 8 6 12 12 H 1.48498 * 109.47404 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47294 * 299.99905 * 10 8 6 14 14 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 15 15 N 1.46494 * 109.47001 * 64.99504 * 14 2 1 16 16 C 1.34784 * 119.99635 * 180.02562 * 15 14 2 17 17 O 1.21690 * 119.99870 * 0.02562 * 16 15 14 18 18 C 1.46660 * 119.99858 * 180.02562 * 16 15 14 19 19 C 1.37927 * 126.21572 * 179.68660 * 18 16 15 20 20 C 1.39926 * 107.11133 * 179.88270 * 19 18 16 21 21 F 1.35092 * 126.07969 * 180.15159 * 20 19 18 22 22 C 1.35566 * 107.84020 * 0.38186 * 20 19 18 23 23 N 1.35750 * 108.83821 * 359.76481 * 22 20 19 24 24 H 0.96994 * 125.68315 * 180.02562 * 23 22 20 25 25 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 26 26 H 1.08995 * 109.47420 * 60.00028 * 1 2 3 27 27 H 1.09006 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46652 * 55.00052 * 4 2 1 29 29 H 1.08990 * 109.47271 * 175.00001 * 4 2 1 30 30 H 0.96997 * 120.00203 * 359.97438 * 5 4 2 31 31 H 0.97008 * 120.00144 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46767 * 304.99570 * 14 2 1 33 33 H 1.09002 * 109.47113 * 184.99910 * 14 2 1 34 34 H 0.96995 * 120.00292 * 0.27801 * 15 14 2 35 35 H 1.08000 * 126.44185 * 0.02562 * 19 18 16 36 36 H 1.08001 * 125.58608 * 179.75734 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6524 0.0353 2.4424 6 6 2.0020 -0.4203 3.6855 7 1 2.5632 -1.3375 3.7864 8 6 1.6352 0.2968 4.8160 9 7 0.9518 1.4149 4.6931 10 14 2.1115 -0.3251 6.5118 11 1 3.5906 -0.4155 6.6086 12 1 1.6039 0.6140 7.5441 13 1 1.5181 -1.6687 6.7311 14 6 2.0400 -0.7211 -1.2493 15 7 1.6524 0.0355 -2.4423 16 6 1.9955 -0.4134 -3.6660 17 8 2.6270 -1.4474 -3.7797 18 6 1.6080 0.3444 -4.8604 19 6 1.8948 0.0087 -6.1671 20 6 1.3364 1.0018 -6.9793 21 9 1.3881 1.0484 -8.3284 22 6 0.7387 1.9117 -6.1714 23 7 0.8972 1.5227 -4.8805 24 1 0.5646 1.9961 -4.1021 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2056 30 1 1.1488 0.8593 2.3518 31 1 0.6958 1.9162 5.4831 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2056 34 1 1.1519 0.8614 -2.3515 35 1 2.4447 -0.8589 -6.5006 36 1 0.2212 2.8006 -6.5007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753627418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:59 Heat of formation + Delta-G solvation = -34.291554 kcal Electronic energy + Delta-G solvation = -19478.976553 eV Core-core repulsion = 16106.473753 eV Total energy + Delta-G solvation = -3372.502800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.80570 -41.63488 -39.35972 -36.91639 -34.52998 -32.66871 -31.21473 -30.33391 -29.47340 -26.64386 -25.46612 -23.34965 -22.24069 -21.03481 -20.68901 -20.26480 -19.09984 -17.14171 -16.40456 -16.22118 -16.09655 -15.72383 -15.47684 -14.98013 -14.60569 -14.48116 -14.03130 -13.81050 -13.68934 -13.58080 -13.10235 -12.69581 -12.40070 -12.13966 -12.03764 -11.13688 -10.97130 -10.78133 -10.66787 -10.55787 -10.32799 -10.07146 -9.72520 -9.35640 -9.23412 -8.91864 -8.64996 -6.97690 -5.81653 -3.10275 0.99691 2.07097 2.51399 2.87118 3.07574 3.41745 3.46156 3.47088 4.16886 4.50134 4.54956 4.61317 4.87285 4.95053 5.10718 5.20434 5.26464 5.53098 5.59839 5.69634 5.84683 5.87295 5.99244 6.03507 6.12673 6.27299 6.33299 6.45790 6.56363 6.69225 6.77388 6.78712 7.25421 7.66001 7.92863 8.37493 9.48834 10.05273 10.39952 11.41287 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.055106 B = 0.002763 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.987333 B =10130.701182 C =10486.197576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.723 5.723 16 C 0.586 3.414 17 O -0.523 6.523 18 C -0.023 4.023 19 C -0.131 4.131 20 C 0.002 3.998 21 F -0.127 7.127 22 C 0.000 4.000 23 N -0.527 5.527 24 H 0.427 0.573 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.160 0.840 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 2.446 -21.304 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.003 3.997 15 N -0.374 5.374 16 C 0.372 3.628 17 O -0.399 6.399 18 C -0.137 4.137 19 C -0.159 4.159 20 C -0.024 4.024 21 F -0.106 7.106 22 C -0.136 4.136 23 N -0.124 5.124 24 H 0.265 0.735 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.178 0.822 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.788 1.630 -21.092 21.231 hybrid contribution -0.374 0.735 1.057 1.341 sum -2.162 2.364 -20.035 20.290 Atomic orbital electron populations 1.21800 0.94639 1.02103 1.01366 1.21572 0.96710 1.00516 0.94237 0.90530 1.20572 0.96699 0.94239 0.85257 1.42321 1.66970 1.27671 1.00582 1.19192 1.28814 1.05492 0.83632 0.91164 1.24735 1.00952 0.97378 0.97905 1.69642 1.43526 1.16566 1.28671 0.86247 0.78054 0.77729 0.84036 1.21225 1.21687 1.21228 1.21502 1.00510 0.95327 0.82332 1.45943 1.57807 1.27566 1.06040 1.16922 0.79738 0.84544 0.81628 1.90875 1.39775 1.23272 1.85981 1.20387 1.06782 0.91165 0.95374 1.21332 1.03690 1.00900 0.89930 1.16482 1.08723 0.99406 0.77775 1.91454 1.95624 1.96471 1.27059 1.21779 1.06877 1.02133 0.82844 1.41757 1.43056 1.19611 1.08006 0.73451 0.91012 0.94204 0.92632 0.95888 0.96020 0.78241 0.93454 0.90851 0.90872 0.77173 0.82203 0.79960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.94 37.15 0.33 -1.59 16 2 C -0.11 -1.58 2.46 -90.62 -0.22 -1.80 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.16 3.05 5.65 -4.04 -0.02 3.03 16 5 N -0.73 -17.78 5.33 -59.91 -0.32 -18.10 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.94 -27.69 13.06 55.49 0.72 -26.97 16 10 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.13 1.60 5.06 -4.04 -0.02 1.58 16 15 N -0.72 -7.56 5.28 -61.62 -0.33 -7.88 16 16 C 0.59 7.17 7.79 -12.86 -0.10 7.07 16 17 O -0.52 -8.41 16.88 5.20 0.09 -8.32 16 18 C -0.02 -0.23 7.05 -81.98 -0.58 -0.81 16 19 C -0.13 -1.40 10.66 -39.06 -0.42 -1.81 16 20 C 0.00 0.02 7.98 -39.90 -0.32 -0.30 16 21 F -0.13 -1.34 17.32 2.25 0.04 -1.30 16 22 C 0.00 0.00 11.90 -16.77 -0.20 -0.20 16 23 N -0.53 -3.44 6.00 -9.31 -0.06 -3.50 16 24 H 0.43 1.48 8.19 -40.82 -0.33 1.14 16 25 H 0.07 1.16 7.18 -51.92 -0.37 0.79 16 26 H 0.04 0.41 7.19 -51.93 -0.37 0.04 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.38 9.68 6.85 -40.82 -0.28 9.40 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.39 3.02 6.79 -40.82 -0.28 2.74 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 315.03 15.07 4.75 4.75 Total: -1.00 -33.30 315.03 -6.48 -39.78 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.56 Total: 6.50 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.79 Total: -2.08 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.02 Total: -56.45 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.30 -6.48 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753627418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.491 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds