Wall clock time and date at job start Mon Mar 30 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46817 * 2 1 4 4 H 1.09004 * 109.46718 * 304.99607 * 3 2 1 5 5 C 1.50699 * 109.47253 * 185.00005 * 3 2 1 6 6 O 1.21279 * 120.00021 * 240.00142 * 5 3 2 7 7 N 1.34781 * 119.99891 * 59.99425 * 5 3 2 8 8 C 1.46505 * 119.99868 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47171 * 178.27826 * 8 7 5 10 10 C 1.50704 * 115.54360 * 65.14461 * 9 8 7 11 11 H 1.08001 * 120.00057 * 265.39808 * 10 9 8 12 12 C 1.37879 * 120.00084 * 85.40829 * 10 9 8 13 13 N 1.31511 * 120.00093 * 353.55003 * 12 10 9 14 14 Si 1.86800 * 119.99939 * 173.55343 * 12 10 9 15 15 H 1.48495 * 109.47058 * 59.99612 * 14 12 10 16 16 H 1.48500 * 109.47040 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46964 * 299.99767 * 14 12 10 18 18 C 1.52992 * 117.50013 * 279.47357 * 9 8 7 19 19 C 1.53001 * 117.49980 * 210.81200 * 9 8 7 20 20 C 1.50700 * 109.47473 * 64.99604 * 3 2 1 21 21 O 1.20823 * 119.99926 * 119.99848 * 20 3 2 22 22 O 1.34233 * 120.00033 * 300.00371 * 20 3 2 23 23 C 1.45190 * 116.99681 * 179.97438 * 22 20 3 24 24 H 1.08998 * 109.47685 * 300.00001 * 1 2 3 25 25 H 1.09003 * 109.47420 * 60.00748 * 1 2 3 26 26 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47685 * 239.99999 * 2 1 3 28 28 H 1.08997 * 109.46997 * 119.99197 * 2 1 3 29 29 H 0.96997 * 119.99962 * 0.02562 * 7 5 3 30 30 H 1.09001 * 109.46876 * 298.28253 * 8 7 5 31 31 H 1.09006 * 109.46858 * 58.27943 * 8 7 5 32 32 H 0.96991 * 120.00115 * 185.07058 * 13 12 10 33 33 H 1.08997 * 117.50330 * 359.97438 * 18 9 8 34 34 H 1.09004 * 117.49989 * 145.02167 * 18 9 8 35 35 H 1.08998 * 117.49568 * 214.98677 * 19 9 8 36 36 H 1.08992 * 117.49762 * 359.97438 * 19 9 8 37 37 H 1.09001 * 109.47057 * 179.97438 * 23 22 20 38 38 H 1.09000 * 109.47772 * 299.99808 * 23 22 20 39 39 H 1.08996 * 109.47541 * 60.00013 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 8 4.2215 1.9437 0.7477 7 7 4.1297 0.8912 -1.2031 8 6 5.5898 0.8926 -1.3232 9 6 5.9964 0.1707 -2.6095 10 6 5.5670 0.8361 -3.8917 11 1 4.6471 0.5384 -4.3728 12 6 6.3486 1.8250 -4.4505 13 7 7.4004 2.2765 -3.8030 14 14 5.9134 2.5234 -6.1275 15 1 4.5565 3.1245 -6.0764 16 1 6.9025 3.5662 -6.5013 17 1 5.9350 1.4352 -7.1377 18 6 6.0250 -1.3587 -2.5824 19 6 7.3358 -0.5688 -2.6114 20 6 1.6411 2.1164 1.2876 21 8 2.4895 2.5532 2.0287 22 8 0.3435 2.2311 1.6112 23 6 0.0331 2.8911 2.8667 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.5860 0.4921 -1.9003 30 1 5.9508 1.9206 -1.3538 31 1 6.0254 0.3798 -0.4656 32 1 7.9074 3.0217 -4.1612 33 1 5.7546 -1.8508 -1.6482 34 1 5.7337 -1.8838 -3.4922 35 1 7.9063 -0.5742 -3.5402 36 1 7.9275 -0.5406 -1.6965 37 1 -1.0476 2.9173 3.0060 38 1 0.4925 2.3425 3.6889 39 1 0.4214 3.9094 2.8476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338912889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:29 Heat of formation + Delta-G solvation = -104.647333 kcal Electronic energy + Delta-G solvation = -21144.502508 eV Core-core repulsion = 17860.116406 eV Total energy + Delta-G solvation = -3284.386102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73611 -38.88906 -36.79451 -36.12372 -34.83583 -33.13571 -31.98536 -28.94997 -27.71641 -26.07911 -25.06008 -22.69882 -21.49971 -21.10703 -19.63259 -19.21598 -17.67247 -17.06287 -16.61488 -16.08944 -15.79787 -14.83345 -14.72119 -14.56111 -14.13447 -13.83995 -13.60610 -13.20162 -12.98673 -12.71689 -12.55374 -12.19393 -11.98648 -11.71678 -11.59061 -11.22386 -11.05034 -11.01236 -10.92954 -10.61731 -10.56130 -10.28793 -10.19986 -9.64446 -9.12514 -8.98876 -8.51611 -8.28901 -8.08604 -6.09204 -4.18487 2.34991 2.57492 3.15342 3.25583 3.32237 3.32945 3.82884 4.33773 4.64592 4.74145 4.87577 5.04146 5.11735 5.17046 5.19370 5.31030 5.35070 5.42134 5.51389 5.66572 5.88405 5.99457 6.01848 6.24850 6.32072 6.43268 6.45839 6.55520 6.67539 6.86899 7.08165 7.26399 7.41782 7.46948 7.79463 7.90540 8.24913 8.31733 8.81630 8.86687 9.48572 10.98596 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.004765 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.760425 B = 5874.254792 C = 6062.761184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.131 0.869 5 C 0.505 3.495 6 O -0.516 6.516 7 N -0.699 5.699 8 C 0.165 3.835 9 C 0.028 3.972 10 C -0.502 4.502 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.874 5.874 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.210 4.210 19 C -0.148 4.148 20 C 0.462 3.538 21 O -0.458 6.458 22 O -0.358 6.358 23 C 0.033 3.967 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.400 0.600 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 -3.457 6.868 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.148 0.852 5 C 0.288 3.712 6 O -0.391 6.391 7 N -0.350 5.350 8 C 0.042 3.958 9 C 0.027 3.973 10 C -0.540 4.540 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.509 5.509 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.247 4.247 19 C -0.186 4.186 20 C 0.301 3.699 21 O -0.341 6.341 22 O -0.276 6.276 23 C -0.061 4.061 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.603 -2.834 7.725 15.898 hybrid contribution -0.350 0.450 -1.172 1.303 sum -13.953 -2.384 6.554 15.598 Atomic orbital electron populations 1.22001 0.94138 1.02071 1.03558 1.21467 0.97341 0.91977 1.04052 1.21181 0.96448 0.99384 0.95567 0.85180 1.19697 0.88210 0.80075 0.83261 1.90817 1.64413 1.44187 1.39714 1.45881 1.09316 1.58445 1.21317 1.21014 0.77056 1.01716 0.96011 1.19027 0.97295 0.87483 0.93515 1.20295 1.07352 1.20862 1.05479 0.92195 1.24989 0.94434 0.96399 0.97178 1.69959 1.17604 1.24775 1.38610 0.86692 0.78175 0.78711 0.84602 1.20253 1.21289 1.20172 1.23023 1.04645 0.97065 1.00004 1.22490 0.90627 1.04803 1.00676 1.23050 0.80719 0.78042 0.88068 1.90815 1.50607 1.42536 1.50098 1.86548 1.28084 1.72220 1.40767 1.23214 1.01602 0.97454 0.83796 0.90604 0.92186 0.92342 0.89490 0.91044 0.76614 0.90892 0.94396 0.92736 0.91629 0.90335 0.89813 0.91663 0.88344 0.92078 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.55 37.16 0.35 -1.08 16 2 C -0.11 -1.22 5.34 -26.73 -0.14 -1.36 16 3 C -0.10 -1.45 2.66 -92.92 -0.25 -1.70 16 4 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 5 C 0.51 9.57 7.15 -10.98 -0.08 9.49 16 6 O -0.52 -12.21 14.19 -18.95 -0.27 -12.48 16 7 N -0.70 -13.23 5.34 -60.29 -0.32 -13.55 16 8 C 0.16 3.72 5.50 -4.04 -0.02 3.70 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 10 C -0.50 -12.63 8.63 -34.44 -0.30 -12.93 16 11 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 12 C 0.07 1.95 5.39 -17.82 -0.10 1.85 16 13 N -0.87 -24.12 12.91 55.43 0.72 -23.40 16 14 Si 0.89 20.29 29.55 -169.99 -5.02 15.26 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C -0.21 -4.25 9.96 -26.70 -0.27 -4.52 16 19 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 20 C 0.46 7.13 7.23 36.01 0.26 7.39 16 21 O -0.46 -9.05 13.93 -26.86 -0.37 -9.42 16 22 O -0.36 -4.32 7.71 -39.27 -0.30 -4.62 16 23 C 0.03 0.31 10.55 101.05 1.07 1.38 16 24 H 0.08 0.72 5.46 -51.93 -0.28 0.43 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.88 7.43 -51.93 -0.39 0.49 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.40 6.67 7.72 -40.82 -0.32 6.35 16 30 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 31 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -31.96 330.22 -6.55 -38.51 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.02 Total: 5.68 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 0.07 Total: -0.95 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.39 Total: -36.96 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.95 Total: -26.53 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.96 -6.55 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338912889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.135 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds