Wall clock time and date at job start Mon Mar 30 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46817 * 2 1 4 4 H 1.09004 * 109.46718 * 304.99607 * 3 2 1 5 5 C 1.50699 * 109.47253 * 185.00005 * 3 2 1 6 6 O 1.21279 * 120.00021 * 240.00142 * 5 3 2 7 7 N 1.34781 * 119.99891 * 59.99425 * 5 3 2 8 8 C 1.46505 * 119.99868 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47171 * 178.27826 * 8 7 5 10 10 C 1.50704 * 115.54360 * 65.14461 * 9 8 7 11 11 H 1.08001 * 120.00057 * 265.39808 * 10 9 8 12 12 C 1.37879 * 120.00084 * 85.40829 * 10 9 8 13 13 N 1.31511 * 120.00093 * 353.55003 * 12 10 9 14 14 Si 1.86800 * 119.99939 * 173.55343 * 12 10 9 15 15 H 1.48495 * 109.47058 * 59.99612 * 14 12 10 16 16 H 1.48500 * 109.47040 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46964 * 299.99767 * 14 12 10 18 18 C 1.52992 * 117.50013 * 279.47357 * 9 8 7 19 19 C 1.53001 * 117.49980 * 210.81200 * 9 8 7 20 20 C 1.50700 * 109.47473 * 64.99604 * 3 2 1 21 21 O 1.20823 * 119.99926 * 119.99848 * 20 3 2 22 22 O 1.34233 * 120.00033 * 300.00371 * 20 3 2 23 23 C 1.45190 * 116.99681 * 179.97438 * 22 20 3 24 24 H 1.08998 * 109.47685 * 300.00001 * 1 2 3 25 25 H 1.09003 * 109.47420 * 60.00748 * 1 2 3 26 26 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47685 * 239.99999 * 2 1 3 28 28 H 1.08997 * 109.46997 * 119.99197 * 2 1 3 29 29 H 0.96997 * 119.99962 * 0.02562 * 7 5 3 30 30 H 1.09001 * 109.46876 * 298.28253 * 8 7 5 31 31 H 1.09006 * 109.46858 * 58.27943 * 8 7 5 32 32 H 0.96991 * 120.00115 * 185.07058 * 13 12 10 33 33 H 1.08997 * 117.50330 * 359.97438 * 18 9 8 34 34 H 1.09004 * 117.49989 * 145.02167 * 18 9 8 35 35 H 1.08998 * 117.49568 * 214.98677 * 19 9 8 36 36 H 1.08992 * 117.49762 * 359.97438 * 19 9 8 37 37 H 1.09001 * 109.47057 * 179.97438 * 23 22 20 38 38 H 1.09000 * 109.47772 * 299.99808 * 23 22 20 39 39 H 1.08996 * 109.47541 * 60.00013 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 8 4.2215 1.9437 0.7477 7 7 4.1297 0.8912 -1.2031 8 6 5.5898 0.8926 -1.3232 9 6 5.9964 0.1707 -2.6095 10 6 5.5670 0.8361 -3.8917 11 1 4.6471 0.5384 -4.3728 12 6 6.3486 1.8250 -4.4505 13 7 7.4004 2.2765 -3.8030 14 14 5.9134 2.5234 -6.1275 15 1 4.5565 3.1245 -6.0764 16 1 6.9025 3.5662 -6.5013 17 1 5.9350 1.4352 -7.1377 18 6 6.0250 -1.3587 -2.5824 19 6 7.3358 -0.5688 -2.6114 20 6 1.6411 2.1164 1.2876 21 8 2.4895 2.5532 2.0287 22 8 0.3435 2.2311 1.6112 23 6 0.0331 2.8911 2.8667 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.5860 0.4921 -1.9003 30 1 5.9508 1.9206 -1.3538 31 1 6.0254 0.3798 -0.4656 32 1 7.9074 3.0217 -4.1612 33 1 5.7546 -1.8508 -1.6482 34 1 5.7337 -1.8838 -3.4922 35 1 7.9063 -0.5742 -3.5402 36 1 7.9275 -0.5406 -1.6965 37 1 -1.0476 2.9173 3.0060 38 1 0.4925 2.3425 3.6889 39 1 0.4214 3.9094 2.8476 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338912889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:28 Heat of formation + Delta-G solvation = -124.356344 kcal Electronic energy + Delta-G solvation = -21145.357155 eV Core-core repulsion = 17860.116406 eV Total energy + Delta-G solvation = -3285.240748 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.97393 -40.34722 -38.49125 -37.36656 -35.95340 -34.74904 -33.93814 -29.97768 -28.75022 -27.78032 -26.82348 -23.60380 -23.02407 -22.55639 -21.31886 -20.78183 -18.86053 -18.49260 -17.91278 -17.43745 -17.23097 -16.63621 -16.31503 -16.05048 -15.54489 -15.00243 -14.88280 -14.41790 -14.33820 -14.23056 -13.72746 -13.51642 -13.37134 -12.99554 -12.94178 -12.88001 -12.76071 -12.37596 -12.11876 -12.01926 -11.93184 -11.61086 -11.45926 -11.35339 -10.84598 -10.70242 -10.43565 -10.03226 -9.82904 -8.07568 -6.21139 1.16813 1.45809 1.47477 1.48331 1.53795 1.66465 2.40688 2.46199 3.20888 3.40428 3.58007 3.74932 3.87418 4.14166 4.26774 4.34798 4.35251 4.47845 4.54735 4.57722 4.66685 4.72500 4.74083 4.88973 5.01758 5.04769 5.16145 5.25108 5.28943 5.34473 5.57912 5.60898 5.61765 5.68581 5.80014 6.38241 6.71397 6.77755 6.87179 7.37520 7.48968 8.99883 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.004765 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.760425 B = 5874.254792 C = 6062.761184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C -0.095 4.095 4 H 0.161 0.839 5 C 0.501 3.499 6 O -0.568 6.568 7 N -0.690 5.690 8 C 0.180 3.820 9 C 0.006 3.994 10 C -0.503 4.503 11 H 0.069 0.931 12 C 0.023 3.977 13 N -0.911 5.911 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.296 1.296 17 H -0.269 1.269 18 C -0.172 4.172 19 C -0.163 4.163 20 C 0.465 3.535 21 O -0.511 6.511 22 O -0.344 6.344 23 C 0.025 3.975 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.413 0.587 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.258 0.742 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.140 0.860 38 H 0.057 0.943 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.606 -4.806 5.975 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.117 4.117 4 H 0.178 0.822 5 C 0.287 3.713 6 O -0.447 6.447 7 N -0.341 5.341 8 C 0.056 3.944 9 C 0.005 3.995 10 C -0.541 4.541 11 H 0.087 0.913 12 C -0.177 4.177 13 N -0.548 5.548 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.222 1.222 17 H -0.194 1.194 18 C -0.209 4.209 19 C -0.201 4.201 20 C 0.306 3.694 21 O -0.397 6.397 22 O -0.261 6.261 23 C -0.068 4.068 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.250 0.750 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.075 0.925 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.676 -4.218 6.800 18.496 hybrid contribution 0.535 0.861 -0.828 1.309 sum -16.141 -3.357 5.972 17.535 Atomic orbital electron populations 1.21965 0.92016 1.03298 1.03877 1.21532 0.99011 0.89406 1.04363 1.21210 0.92412 1.01980 0.96074 0.82207 1.20529 0.90354 0.78422 0.82028 1.90801 1.66250 1.46183 1.41467 1.45707 1.07928 1.58504 1.21924 1.20561 0.79245 0.98808 0.95783 1.19049 0.98023 0.89539 0.92906 1.20660 1.07258 1.20266 1.05894 0.91252 1.25732 0.94549 0.97180 1.00260 1.70106 1.19013 1.25465 1.40224 0.85739 0.77860 0.77923 0.80850 1.19360 1.22184 1.19365 1.23014 1.01333 0.94867 1.01657 1.22431 0.91220 1.06634 0.99844 1.23324 0.81245 0.76921 0.87882 1.90809 1.52191 1.44917 1.51801 1.86552 1.25800 1.71880 1.41869 1.23549 1.04104 0.96691 0.82452 0.91168 0.90930 0.90687 0.88039 0.91933 0.74977 0.95493 0.94843 0.93335 0.89215 0.89216 0.91828 0.91460 0.84189 0.92462 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.55 71.98 0.69 -1.48 16 2 C -0.11 -2.01 5.34 30.59 0.16 -1.85 16 3 C -0.09 -2.49 2.66 -12.29 -0.03 -2.53 16 4 H 0.16 3.26 8.14 -2.38 -0.02 3.24 16 5 C 0.50 18.92 7.15 87.66 0.63 19.55 16 6 O -0.57 -27.80 14.19 20.41 0.29 -27.51 16 7 N -0.69 -25.61 5.34 -463.04 -2.47 -28.08 16 8 C 0.18 8.26 5.50 86.38 0.48 8.74 16 9 C 0.01 0.25 1.38 -52.93 -0.07 0.18 16 10 C -0.50 -24.87 8.63 25.60 0.22 -24.65 16 11 H 0.07 3.23 7.82 -2.91 -0.02 3.21 16 12 C 0.02 1.22 5.39 84.66 0.46 1.68 16 13 N -0.91 -51.54 12.91 21.45 0.28 -51.27 16 14 Si 0.95 41.42 29.55 68.60 2.03 43.44 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 16 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C -0.17 -6.55 9.96 30.62 0.30 -6.24 16 19 C -0.16 -7.36 9.42 30.62 0.29 -7.07 16 20 C 0.46 13.94 7.23 71.24 0.51 14.45 16 21 O -0.51 -20.59 13.93 29.73 0.41 -20.18 16 22 O -0.34 -7.59 7.71 -51.45 -0.40 -7.98 16 23 C 0.03 0.43 10.55 113.37 1.20 1.62 16 24 H 0.07 1.08 5.46 -2.39 -0.01 1.07 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 1.67 7.43 -2.39 -0.02 1.65 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.41 12.91 7.72 -92.71 -0.72 12.20 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 1.54 8.09 -2.38 -0.02 1.52 16 32 H 0.26 14.20 8.32 -92.72 -0.77 13.43 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 Total: -1.00 -71.89 330.22 5.30 -66.59 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.33 Total: 22.58 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.83 Total: 2.41 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.19 Total: -79.35 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: 0.31 Total: -55.67 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -71.89 5.30 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338912889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.766 kcal (2) G-P(sol) polarization free energy of solvation -71.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds