Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 H 1.09000 * 109.47194 * 54.50532 * 3 2 1 5 5 C 1.50705 * 109.47410 * 174.50253 * 3 2 1 6 6 H 1.07993 * 119.99811 * 120.00000 * 5 3 2 7 7 C 1.37872 * 119.99765 * 300.00268 * 5 3 2 8 8 N 1.31518 * 120.00195 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47070 * 120.00232 * 9 7 5 12 12 H 1.48500 * 109.47313 * 239.99810 * 9 7 5 13 13 N 1.46904 * 109.47202 * 294.50508 * 3 2 1 14 14 C 1.46906 * 110.99973 * 154.42128 * 13 3 2 15 15 C 1.52996 * 109.47225 * 174.78446 * 14 13 3 16 16 C 1.50695 * 109.47278 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.96765 * 269.72855 * 16 15 14 18 18 C 1.38218 * 120.06991 * 179.76596 * 17 16 15 19 19 C 1.38409 * 119.99578 * 0.50854 * 18 17 16 20 20 F 1.35109 * 120.03279 * 179.71955 * 19 18 17 21 21 C 1.38647 * 119.93711 * 359.74477 * 19 18 17 22 22 F 1.35096 * 120.03960 * 180.02562 * 21 19 18 23 23 C 1.38212 * 119.96131 * 90.00453 * 16 15 14 24 24 H 1.08997 * 109.47409 * 186.00562 * 1 2 3 25 25 H 1.09001 * 109.47328 * 306.00747 * 1 2 3 26 26 H 1.09004 * 109.47114 * 66.00407 * 1 2 3 27 27 H 1.09007 * 109.46982 * 240.00540 * 2 1 3 28 28 H 1.08996 * 109.47232 * 120.00675 * 2 1 3 29 29 H 0.96997 * 119.99750 * 179.97438 * 8 7 5 30 30 H 1.00890 * 110.99786 * 30.46501 * 13 3 2 31 31 H 1.09000 * 109.46831 * 294.78581 * 14 13 3 32 32 H 1.09006 * 109.46966 * 54.78558 * 14 13 3 33 33 H 1.09003 * 109.47217 * 300.00359 * 15 14 13 34 34 H 1.09006 * 109.47057 * 60.00168 * 15 14 13 35 35 H 1.08001 * 119.96238 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.99809 * 180.25350 * 18 17 16 37 37 H 1.08006 * 120.00420 * 359.95483 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5986 1.9839 0.8367 5 6 3.5409 1.4446 0.1361 6 1 4.1524 1.8869 -0.6363 7 6 4.1331 0.8818 1.2467 8 7 3.3883 0.3436 2.1876 9 14 5.9935 0.8839 1.4151 10 1 6.5971 1.5457 0.2307 11 1 6.3785 1.6230 2.6443 12 1 6.4840 -0.5149 1.5047 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0911 15 6 1.3012 4.2069 -2.4477 16 6 1.2047 5.7007 -2.2741 17 6 -0.0198 6.2882 -2.0151 18 6 -0.1099 7.6576 -1.8507 19 6 1.0246 8.4433 -1.9557 20 9 0.9364 9.7826 -1.8007 21 6 2.2518 7.8548 -2.2206 22 9 3.3606 8.6197 -2.3229 23 6 2.3395 6.4826 -2.3795 24 1 -0.3634 -1.0220 0.1075 25 1 -0.3634 0.6042 0.8313 26 1 -0.3633 0.4179 -0.9389 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8050 -0.0526 2.9687 30 1 0.7978 1.7170 -1.6186 31 1 0.7523 3.7866 -0.4074 32 1 2.5050 3.9311 -0.6826 33 1 2.1170 3.9721 -3.1314 34 1 0.3644 3.8277 -2.8562 35 1 -0.9061 5.6759 -1.9371 36 1 -1.0663 8.1148 -1.6444 37 1 3.2949 6.0229 -2.5855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572971353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -81.360544 kcal Electronic energy + Delta-G solvation = -19878.477271 eV Core-core repulsion = 16484.013444 eV Total energy + Delta-G solvation = -3394.463826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.51460 -48.59222 -39.28548 -36.51816 -33.75116 -31.93416 -30.98607 -30.59264 -27.75700 -26.01930 -23.44588 -23.18063 -22.22349 -20.93315 -19.55233 -17.98172 -17.22986 -16.94821 -16.36107 -16.31618 -15.02335 -14.98929 -14.87822 -14.57963 -14.35663 -14.16130 -13.90606 -13.38490 -13.03135 -12.73622 -12.56809 -12.20566 -11.84393 -11.70662 -11.46426 -11.23518 -11.12175 -10.84246 -10.63146 -10.57418 -9.98019 -9.74368 -9.65175 -9.15569 -9.08321 -8.63908 -8.36239 -7.27974 -5.98410 -4.02527 0.82299 0.90465 3.25879 3.30672 3.38938 3.43734 3.70136 4.24411 4.42135 4.44797 4.58814 4.88961 5.04362 5.27179 5.34756 5.43706 5.63815 5.69477 5.78278 5.86504 5.91809 6.01874 6.12331 6.13280 6.19967 6.38076 6.51406 6.61159 6.67676 6.81225 7.05165 7.16112 7.45985 7.75812 7.89884 8.25882 8.37211 8.72385 9.05595 9.62773 11.07095 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004313 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.816024 B = 6490.262913 C = 7515.712104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.687 5.687 14 C 0.073 3.927 15 C -0.081 4.081 16 C -0.048 4.048 17 C -0.100 4.100 18 C -0.124 4.124 19 C 0.053 3.947 20 F -0.134 7.134 21 C 0.070 3.930 22 F -0.131 7.131 23 C -0.121 4.121 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.259 0.741 30 H 0.316 0.684 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 10.900 -8.508 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.318 5.318 14 C -0.057 4.057 15 C -0.119 4.119 16 C -0.049 4.049 17 C -0.118 4.118 18 C -0.143 4.143 19 C 0.033 3.967 20 F -0.113 7.113 21 C 0.049 3.951 22 F -0.110 7.110 23 C -0.140 4.140 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.107 10.906 -8.558 15.579 hybrid contribution 0.358 0.492 0.799 1.005 sum -6.749 11.398 -7.759 15.352 Atomic orbital electron populations 1.21879 0.99607 0.99752 0.99489 1.21767 0.91221 1.00326 1.03122 1.19165 0.95536 0.89980 0.84221 0.98060 1.21243 0.91238 1.36413 1.04273 0.92006 1.24958 0.98104 0.95639 0.95846 1.69880 1.34615 1.39542 1.09602 0.86510 0.85810 0.77619 0.77883 1.19773 1.21243 1.21110 1.60675 1.36097 1.01822 1.33228 1.21777 1.00631 0.90209 0.93043 1.20724 1.03292 0.87991 0.99903 1.19969 0.91925 0.96925 0.96047 1.21045 0.98214 0.93537 0.99030 1.21046 0.97347 0.94102 1.01785 1.17677 0.93777 0.77986 1.07306 1.91509 1.96897 1.29418 1.93443 1.17700 0.81803 0.89716 1.05835 1.91521 1.50494 1.75197 1.93743 1.21103 1.00932 0.90367 1.01596 0.94370 0.93929 0.94607 0.93998 0.88247 0.93133 0.86668 0.96538 0.90563 0.89661 0.90937 0.84285 0.83894 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.64 37.15 0.36 -2.42 16 2 C -0.13 -2.87 5.36 -26.74 -0.14 -3.01 16 3 C 0.22 5.24 2.02 -68.86 -0.14 5.10 16 4 H 0.00 0.05 7.85 -51.93 -0.41 -0.36 16 5 C -0.49 -13.29 8.57 -34.44 -0.30 -13.59 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.18 11.29 55.43 0.63 -24.56 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -13.58 6.27 -107.94 -0.68 -14.25 16 14 C 0.07 1.26 5.44 -3.82 -0.02 1.23 16 15 C -0.08 -1.04 5.65 -27.89 -0.16 -1.20 16 16 C -0.05 -0.57 5.13 -104.63 -0.54 -1.11 16 17 C -0.10 -1.03 9.69 -39.58 -0.38 -1.42 16 18 C -0.12 -1.27 10.02 -39.53 -0.40 -1.67 16 19 C 0.05 0.65 7.31 -39.37 -0.29 0.36 16 20 F -0.13 -1.75 17.18 2.25 0.04 -1.72 16 21 C 0.07 0.91 7.31 -39.36 -0.29 0.63 16 22 F -0.13 -1.85 17.18 2.25 0.04 -1.81 16 23 C -0.12 -1.51 9.68 -39.52 -0.38 -1.89 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.58 6.66 -51.93 -0.35 0.23 16 27 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.32 5.60 6.64 -39.30 -0.26 5.34 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 33 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 34 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.15 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -28.38 317.95 -8.05 -36.43 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.08 Total: 2.43 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.77 Total: -17.57 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.05 Total: -38.81 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.38 -8.05 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572971353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.930 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds