Wall clock time and date at job start Mon Mar 30 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 H 1.09000 * 109.47194 * 54.50532 * 3 2 1 5 5 C 1.50705 * 109.47410 * 174.50253 * 3 2 1 6 6 H 1.07993 * 119.99811 * 120.00000 * 5 3 2 7 7 C 1.37872 * 119.99765 * 300.00268 * 5 3 2 8 8 N 1.31518 * 120.00195 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47268 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47070 * 120.00232 * 9 7 5 12 12 H 1.48500 * 109.47313 * 239.99810 * 9 7 5 13 13 N 1.46904 * 109.47202 * 294.50508 * 3 2 1 14 14 C 1.46906 * 110.99973 * 154.42128 * 13 3 2 15 15 C 1.52996 * 109.47225 * 174.78446 * 14 13 3 16 16 C 1.50695 * 109.47278 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.96765 * 269.72855 * 16 15 14 18 18 C 1.38218 * 120.06991 * 179.76596 * 17 16 15 19 19 C 1.38409 * 119.99578 * 0.50854 * 18 17 16 20 20 F 1.35109 * 120.03279 * 179.71955 * 19 18 17 21 21 C 1.38647 * 119.93711 * 359.74477 * 19 18 17 22 22 F 1.35096 * 120.03960 * 180.02562 * 21 19 18 23 23 C 1.38212 * 119.96131 * 90.00453 * 16 15 14 24 24 H 1.08997 * 109.47409 * 186.00562 * 1 2 3 25 25 H 1.09001 * 109.47328 * 306.00747 * 1 2 3 26 26 H 1.09004 * 109.47114 * 66.00407 * 1 2 3 27 27 H 1.09007 * 109.46982 * 240.00540 * 2 1 3 28 28 H 1.08996 * 109.47232 * 120.00675 * 2 1 3 29 29 H 0.96997 * 119.99750 * 179.97438 * 8 7 5 30 30 H 1.00890 * 110.99786 * 30.46501 * 13 3 2 31 31 H 1.09000 * 109.46831 * 294.78581 * 14 13 3 32 32 H 1.09006 * 109.46966 * 54.78558 * 14 13 3 33 33 H 1.09003 * 109.47217 * 300.00359 * 15 14 13 34 34 H 1.09006 * 109.47057 * 60.00168 * 15 14 13 35 35 H 1.08001 * 119.96238 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.99809 * 180.25350 * 18 17 16 37 37 H 1.08006 * 120.00420 * 359.95483 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5986 1.9839 0.8367 5 6 3.5409 1.4446 0.1361 6 1 4.1524 1.8869 -0.6363 7 6 4.1331 0.8818 1.2467 8 7 3.3883 0.3436 2.1876 9 14 5.9935 0.8839 1.4151 10 1 6.5971 1.5457 0.2307 11 1 6.3785 1.6230 2.6443 12 1 6.4840 -0.5149 1.5047 13 7 1.6617 2.0956 -1.2603 14 6 1.5682 3.5519 -1.0911 15 6 1.3012 4.2069 -2.4477 16 6 1.2047 5.7007 -2.2741 17 6 -0.0198 6.2882 -2.0151 18 6 -0.1099 7.6576 -1.8507 19 6 1.0246 8.4433 -1.9557 20 9 0.9364 9.7826 -1.8007 21 6 2.2518 7.8548 -2.2206 22 9 3.3606 8.6197 -2.3229 23 6 2.3395 6.4826 -2.3795 24 1 -0.3634 -1.0220 0.1075 25 1 -0.3634 0.6042 0.8313 26 1 -0.3633 0.4179 -0.9389 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8050 -0.0526 2.9687 30 1 0.7978 1.7170 -1.6186 31 1 0.7523 3.7866 -0.4074 32 1 2.5050 3.9311 -0.6826 33 1 2.1170 3.9721 -3.1314 34 1 0.3644 3.8277 -2.8562 35 1 -0.9061 5.6759 -1.9371 36 1 -1.0663 8.1148 -1.6444 37 1 3.2949 6.0229 -2.5855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572971353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:14 Heat of formation + Delta-G solvation = -96.761371 kcal Electronic energy + Delta-G solvation = -19879.145101 eV Core-core repulsion = 16484.013444 eV Total energy + Delta-G solvation = -3395.131656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.52117 -49.60626 -40.22513 -38.17616 -35.20614 -33.73876 -32.15558 -31.72430 -29.20624 -27.68306 -24.89555 -24.24703 -23.58701 -22.10826 -21.34437 -18.95051 -18.38650 -18.17064 -17.91702 -17.36231 -16.76318 -16.38644 -16.04023 -15.82411 -15.57049 -15.38068 -14.95771 -14.71759 -14.66307 -13.98863 -13.88071 -13.51874 -13.30675 -13.11220 -12.85630 -12.71140 -12.53589 -12.42525 -12.20120 -11.98983 -11.85287 -11.50705 -11.36164 -10.97885 -10.41566 -10.06394 -9.61603 -8.96207 -8.05843 -6.17192 -0.11999 0.01738 1.39736 1.42651 1.53497 2.34720 2.44519 2.78161 3.19585 3.28596 3.47731 3.63137 3.94334 4.08545 4.15938 4.30790 4.50951 4.55023 4.61968 4.73795 4.76852 4.77995 4.84540 4.90056 5.04516 5.09493 5.14578 5.26874 5.30851 5.42212 5.51979 5.64140 5.76213 5.77955 5.94097 6.38760 6.53969 6.97352 7.07966 7.52125 8.97310 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004313 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.816024 B = 6490.262913 C = 7515.712104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.223 3.777 4 H -0.031 1.031 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.687 5.687 14 C 0.076 3.924 15 C -0.066 4.066 16 C -0.056 4.056 17 C -0.089 4.089 18 C -0.114 4.114 19 C 0.041 3.959 20 F -0.141 7.141 21 C 0.047 3.953 22 F -0.144 7.144 23 C -0.129 4.129 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.020 0.980 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.170 0.830 36 H 0.174 0.826 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.459 10.973 -9.479 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.115 3.885 4 H -0.014 1.014 5 C -0.548 4.548 6 H 0.068 0.932 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.319 5.319 14 C -0.054 4.054 15 C -0.103 4.103 16 C -0.057 4.057 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.022 3.978 20 F -0.120 7.120 21 C 0.027 3.973 22 F -0.122 7.122 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.187 0.813 36 H 0.192 0.808 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.747 10.985 -9.548 16.981 hybrid contribution 0.837 0.496 1.097 1.466 sum -7.910 11.481 -8.451 16.304 Atomic orbital electron populations 1.21746 0.96036 1.01092 1.00738 1.21591 0.94432 0.98869 1.01175 1.18926 0.93856 0.90776 0.84923 1.01393 1.21533 0.93058 1.36193 1.04046 0.93227 1.25641 1.01965 0.95495 0.95710 1.70003 1.36025 1.40085 1.09923 0.85618 0.81256 0.77694 0.77723 1.19550 1.21017 1.20548 1.60517 1.37251 1.03278 1.30857 1.21745 0.99160 0.88703 0.95768 1.20536 1.04545 0.88258 0.97009 1.19951 0.92515 0.96283 0.96930 1.21387 0.98436 0.93815 0.97040 1.21386 0.97752 0.93925 1.00150 1.17963 0.94246 0.77958 1.07683 1.91489 1.96932 1.29988 1.93548 1.17922 0.81967 0.90023 1.07348 1.91480 1.51219 1.75508 1.94026 1.21171 1.01408 0.90305 1.01864 0.92618 0.94570 0.91784 0.94352 0.91708 0.93158 0.84905 0.96154 0.93797 0.90054 0.88172 0.81255 0.80810 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.64 71.98 0.69 -4.16 16 2 C -0.12 -5.54 5.36 30.59 0.16 -5.38 16 3 C 0.22 10.83 2.02 44.17 0.09 10.92 16 4 H -0.03 -1.71 7.85 -2.39 -0.02 -1.73 16 5 C -0.51 -27.98 8.57 25.60 0.22 -27.76 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.55 5.29 84.65 0.45 0.99 16 8 N -0.92 -52.62 11.29 21.45 0.24 -52.38 16 9 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.69 -26.48 6.27 -495.43 -3.11 -29.59 16 14 C 0.08 2.53 5.44 86.30 0.47 3.00 16 15 C -0.07 -1.54 5.65 29.85 0.17 -1.38 16 16 C -0.06 -1.22 5.13 -19.87 -0.10 -1.32 16 17 C -0.09 -1.53 9.69 22.27 0.22 -1.31 16 18 C -0.11 -1.99 10.02 22.31 0.22 -1.76 16 19 C 0.04 0.98 7.31 22.41 0.16 1.14 16 20 F -0.14 -3.56 17.18 44.97 0.77 -2.79 16 21 C 0.05 1.24 7.31 22.41 0.16 1.40 16 22 F -0.14 -4.16 17.18 44.97 0.77 -3.39 16 23 C -0.13 -3.16 9.68 22.31 0.22 -2.94 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.87 6.66 -2.39 -0.02 1.85 16 27 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.06 3.41 5.94 -2.39 -0.01 3.40 16 29 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.33 10.93 6.64 -89.70 -0.60 10.33 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.04 1.73 7.94 -2.38 -0.02 1.71 16 33 H 0.08 1.99 8.09 -2.39 -0.02 1.97 16 34 H 0.10 1.83 8.08 -2.38 -0.02 1.81 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -62.65 317.95 4.32 -58.34 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.48 Total: 12.18 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 3.13 Total: -28.57 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.86 Total: -81.96 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.55 Total: -6.18 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.65 4.32 -58.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572971353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.425 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds