Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47022 * 2 1 4 4 N 1.46500 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.35056 * 270.00574 * 4 3 2 6 6 C 1.54479 * 105.47653 * 197.03442 * 5 4 3 7 7 H 1.08996 * 111.00496 * 216.44892 * 6 5 4 8 8 C 1.50706 * 110.97235 * 92.69810 * 6 5 4 9 9 O 1.20830 * 119.99594 * 6.17101 * 8 6 5 10 10 O 1.34222 * 120.00024 * 185.89385 * 8 6 5 11 11 C 1.45201 * 116.99867 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47165 * 329.99551 * 11 10 8 13 13 C 1.52994 * 109.47476 * 90.00185 * 11 10 8 14 14 C 1.50707 * 109.47123 * 210.00308 * 11 10 8 15 15 H 1.07991 * 120.00016 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99679 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00215 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99653 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47398 * 59.99768 * 18 16 14 20 20 H 1.48504 * 109.47085 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47152 * 299.99742 * 18 16 14 22 22 C 1.54632 * 101.76326 * 334.58220 * 6 5 4 23 23 C 1.34423 * 124.35040 * 90.02009 * 4 3 2 24 24 O 1.21275 * 124.94196 * 359.61822 * 23 4 3 25 25 H 1.09004 * 109.46647 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47173 * 299.99763 * 1 2 3 27 27 H 1.09002 * 109.47069 * 60.00393 * 1 2 3 28 28 H 1.08999 * 109.47019 * 239.99787 * 2 1 3 29 29 H 1.08996 * 109.47383 * 120.00443 * 2 1 3 30 30 H 1.08999 * 109.47397 * 60.00019 * 3 2 1 31 31 H 1.08996 * 109.47536 * 299.99892 * 3 2 1 32 32 H 1.09000 * 110.25211 * 78.03262 * 5 4 3 33 33 H 1.09009 * 110.24517 * 316.03201 * 5 4 3 34 34 H 1.09007 * 109.47007 * 300.00295 * 13 11 10 35 35 H 1.09002 * 109.47441 * 59.99535 * 13 11 10 36 36 H 1.08994 * 109.47501 * 180.02562 * 13 11 10 37 37 H 0.97000 * 119.99738 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.48551 * 143.47455 * 22 6 5 39 39 H 1.09001 * 110.48179 * 266.11950 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4422 1.2107 6 6 5.7412 1.8785 0.7473 7 1 6.5164 1.3467 1.2990 8 6 5.9149 3.3696 0.8806 9 8 5.0539 4.0333 1.4082 10 8 7.0283 3.9596 0.4183 11 6 7.1279 5.3990 0.5811 12 1 6.1299 5.8369 0.5599 13 6 7.7955 5.7157 1.9208 14 6 7.9533 5.9755 -0.5403 15 1 8.3625 5.3252 -1.2991 16 6 8.1869 7.3332 -0.5967 17 7 7.6891 8.1251 0.3277 18 14 9.2107 8.0477 -1.9862 19 1 8.5630 7.7407 -3.2867 20 1 9.3124 9.5198 -1.8197 21 1 10.5701 7.4506 -1.9571 22 6 5.7295 1.4535 -0.7394 23 6 4.2630 1.4431 -1.1107 24 8 3.8337 1.4370 -2.2449 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.3716 0.4417 1.6416 33 1 3.9390 2.1521 1.9378 34 1 7.1984 5.2987 2.7319 35 1 8.7934 5.2778 1.9420 36 1 7.8698 6.7962 2.0432 37 1 7.8532 9.0803 0.2878 38 1 6.2719 2.1776 -1.3474 39 1 6.1594 0.4586 -0.8550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842311503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -134.440739 kcal Electronic energy + Delta-G solvation = -21049.829684 eV Core-core repulsion = 17764.151643 eV Total energy + Delta-G solvation = -3285.678041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80846 -39.19882 -36.53085 -35.73340 -34.84953 -33.30294 -31.61100 -29.58536 -27.70501 -26.48721 -25.35771 -23.90549 -21.90938 -21.24955 -19.62443 -19.35063 -17.50015 -16.87780 -16.59014 -16.00369 -15.69895 -15.06953 -14.91467 -14.66806 -14.41030 -13.83322 -13.58881 -13.18709 -12.99465 -12.78284 -12.28624 -12.28005 -12.03331 -11.91276 -11.62237 -11.55060 -11.41702 -11.22399 -11.06443 -10.87820 -10.87575 -10.42876 -10.30413 -9.76773 -9.69649 -9.58704 -8.96204 -8.73668 -8.51560 -6.20792 -4.28036 2.63617 2.81527 2.96885 3.26224 3.29013 3.30752 3.47123 4.26662 4.30974 4.35297 4.75781 4.78981 4.84003 5.06341 5.11887 5.14018 5.30332 5.37218 5.47858 5.50784 5.55591 5.64525 5.80088 5.81902 5.87410 5.94997 6.05245 6.51913 6.58235 6.82969 6.85257 7.09008 7.11215 7.55743 7.67732 7.88003 8.09479 8.20553 8.54403 8.82784 9.37631 10.86593 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.004272 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.470339 B = 6552.728938 C = 6826.671791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.126 3.874 4 N -0.617 5.617 5 C 0.113 3.887 6 C -0.100 4.100 7 H 0.132 0.868 8 C 0.458 3.542 9 O -0.514 6.514 10 O -0.352 6.352 11 C 0.216 3.784 12 H 0.046 0.954 13 C -0.155 4.155 14 C -0.523 4.523 15 H 0.069 0.931 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.146 4.146 23 C 0.518 3.482 24 O -0.531 6.531 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.016 0.984 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.267 0.733 38 H 0.119 0.881 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -15.662 3.394 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.005 3.995 4 N -0.351 5.351 5 C -0.010 4.010 6 C -0.120 4.120 7 H 0.150 0.850 8 C 0.300 3.700 9 O -0.404 6.404 10 O -0.267 6.267 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.212 4.212 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.186 4.186 23 C 0.306 3.694 24 O -0.407 6.407 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.027 -15.196 2.998 17.445 hybrid contribution 0.520 0.579 -0.430 0.889 sum -7.508 -14.616 2.567 16.631 Atomic orbital electron populations 1.21693 0.95057 1.01871 1.02105 1.21910 0.96218 0.97211 1.02497 1.21433 0.77783 0.96812 1.03512 1.48231 1.06268 1.73442 1.07149 1.22075 0.88643 1.02120 0.88154 1.21949 0.99389 0.92070 0.98571 0.85040 1.22881 0.81033 0.90389 0.75654 1.90603 1.42970 1.65702 1.41138 1.86466 1.38347 1.29735 1.72197 1.20670 0.98161 0.69671 0.95104 0.93605 1.22164 0.98493 1.04926 0.95642 1.20986 1.33235 0.92420 1.09455 0.91280 1.24883 0.95913 0.96395 0.96728 1.69884 1.44487 1.04765 1.33582 0.86321 0.80369 0.77704 0.81696 1.19911 1.21016 1.19881 1.22370 0.95258 1.05626 0.95319 1.20891 0.89211 0.74889 0.84434 1.90709 1.78612 1.50338 1.21066 0.92501 0.92495 0.92438 0.91617 0.91777 0.90160 0.90041 0.90013 0.88308 0.96529 0.94339 0.88191 0.92307 0.86310 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.13 1.46 5.93 -4.05 -0.02 1.44 16 4 N -0.62 -8.25 2.93 -172.42 -0.51 -8.76 16 5 C 0.11 1.28 6.73 -3.12 -0.02 1.26 16 6 C -0.10 -1.30 3.66 -90.13 -0.33 -1.63 16 7 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 8 C 0.46 8.92 7.22 36.01 0.26 9.18 16 9 O -0.51 -11.42 14.73 -18.75 -0.28 -11.70 16 10 O -0.35 -8.00 9.66 -39.24 -0.38 -8.38 16 11 C 0.22 5.72 2.56 -27.88 -0.07 5.64 16 12 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 13 C -0.15 -3.83 9.32 37.15 0.35 -3.48 16 14 C -0.52 -14.61 8.90 -34.44 -0.31 -14.91 16 15 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 18 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.15 -1.92 6.40 -26.74 -0.17 -2.09 16 23 C 0.52 8.19 8.02 -10.86 -0.09 8.10 16 24 O -0.53 -10.28 17.59 5.56 0.10 -10.18 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.23 6.95 -51.92 -0.36 0.87 16 34 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.12 1.81 7.73 -51.93 -0.40 1.41 16 39 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -33.09 328.82 -6.85 -39.95 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.06 Total: -0.30 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.30 Total: 2.88 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.12 Total: -33.33 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.56 Total: -30.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.09 -6.85 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.493 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds