Wall clock time and date at job start Mon Mar 30 2020 01:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47022 * 2 1 4 4 N 1.46500 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.46761 * 124.35056 * 270.00574 * 4 3 2 6 6 C 1.54479 * 105.47653 * 197.03442 * 5 4 3 7 7 H 1.08996 * 111.00496 * 216.44892 * 6 5 4 8 8 C 1.50706 * 110.97235 * 92.69810 * 6 5 4 9 9 O 1.20830 * 119.99594 * 6.17101 * 8 6 5 10 10 O 1.34222 * 120.00024 * 185.89385 * 8 6 5 11 11 C 1.45201 * 116.99867 * 180.02562 * 10 8 6 12 12 H 1.09002 * 109.47165 * 329.99551 * 11 10 8 13 13 C 1.52994 * 109.47476 * 90.00185 * 11 10 8 14 14 C 1.50707 * 109.47123 * 210.00308 * 11 10 8 15 15 H 1.07991 * 120.00016 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99679 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00215 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99653 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47398 * 59.99768 * 18 16 14 20 20 H 1.48504 * 109.47085 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47152 * 299.99742 * 18 16 14 22 22 C 1.54632 * 101.76326 * 334.58220 * 6 5 4 23 23 C 1.34423 * 124.35040 * 90.02009 * 4 3 2 24 24 O 1.21275 * 124.94196 * 359.61822 * 23 4 3 25 25 H 1.09004 * 109.46647 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47173 * 299.99763 * 1 2 3 27 27 H 1.09002 * 109.47069 * 60.00393 * 1 2 3 28 28 H 1.08999 * 109.47019 * 239.99787 * 2 1 3 29 29 H 1.08996 * 109.47383 * 120.00443 * 2 1 3 30 30 H 1.08999 * 109.47397 * 60.00019 * 3 2 1 31 31 H 1.08996 * 109.47536 * 299.99892 * 3 2 1 32 32 H 1.09000 * 110.25211 * 78.03262 * 5 4 3 33 33 H 1.09009 * 110.24517 * 316.03201 * 5 4 3 34 34 H 1.09007 * 109.47007 * 300.00295 * 13 11 10 35 35 H 1.09002 * 109.47441 * 59.99535 * 13 11 10 36 36 H 1.08994 * 109.47501 * 180.02562 * 13 11 10 37 37 H 0.97000 * 119.99738 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.48551 * 143.47455 * 22 6 5 39 39 H 1.09001 * 110.48179 * 266.11950 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3336 1.4422 1.2107 6 6 5.7412 1.8785 0.7473 7 1 6.5164 1.3467 1.2990 8 6 5.9149 3.3696 0.8806 9 8 5.0539 4.0333 1.4082 10 8 7.0283 3.9596 0.4183 11 6 7.1279 5.3990 0.5811 12 1 6.1299 5.8369 0.5599 13 6 7.7955 5.7157 1.9208 14 6 7.9533 5.9755 -0.5403 15 1 8.3625 5.3252 -1.2991 16 6 8.1869 7.3332 -0.5967 17 7 7.6891 8.1251 0.3277 18 14 9.2107 8.0477 -1.9862 19 1 8.5630 7.7407 -3.2867 20 1 9.3124 9.5198 -1.8197 21 1 10.5701 7.4506 -1.9571 22 6 5.7295 1.4535 -0.7394 23 6 4.2630 1.4431 -1.1107 24 8 3.8337 1.4370 -2.2449 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.3716 0.4417 1.6416 33 1 3.9390 2.1521 1.9378 34 1 7.1984 5.2987 2.7319 35 1 8.7934 5.2778 1.9420 36 1 7.8698 6.7962 2.0432 37 1 7.8532 9.0803 0.2878 38 1 6.2719 2.1776 -1.3474 39 1 6.1594 0.4586 -0.8550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842311503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:11 Heat of formation + Delta-G solvation = -155.139052 kcal Electronic energy + Delta-G solvation = -21050.727230 eV Core-core repulsion = 17764.151643 eV Total energy + Delta-G solvation = -3286.575587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.08494 -40.72436 -37.96925 -37.25537 -35.84195 -35.32301 -32.65115 -31.54735 -28.79270 -27.50903 -27.36873 -25.23866 -22.99922 -22.69598 -21.18713 -20.48916 -19.07362 -18.49678 -17.95690 -17.69144 -16.89541 -16.70292 -16.38920 -16.03427 -15.56454 -14.90191 -14.87173 -14.57773 -14.32558 -14.03880 -13.82654 -13.64717 -13.15605 -13.12476 -13.09143 -12.89249 -12.82632 -12.65538 -12.50626 -12.38144 -12.23308 -12.17984 -11.66003 -11.60390 -11.31109 -11.00390 -10.94383 -10.60748 -9.78366 -8.30562 -6.47275 1.27133 1.40546 1.44105 1.44628 1.52040 1.90332 2.01992 2.39391 3.00314 3.20641 3.29386 3.69198 3.87367 3.97928 4.03478 4.31542 4.34365 4.50846 4.53658 4.55251 4.61948 4.67397 4.77406 4.79313 4.83425 4.85521 4.92650 5.12551 5.17090 5.18663 5.33199 5.47704 5.54634 5.63561 5.92029 6.02606 6.07928 6.57643 6.92539 7.04135 7.24704 8.76706 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.004272 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.470339 B = 6552.728938 C = 6826.671791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.119 3.881 4 N -0.617 5.617 5 C 0.114 3.886 6 C -0.086 4.086 7 H 0.183 0.817 8 C 0.447 3.553 9 O -0.548 6.548 10 O -0.358 6.358 11 C 0.219 3.781 12 H 0.002 0.998 13 C -0.141 4.141 14 C -0.551 4.551 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.980 3.020 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.260 1.260 22 C -0.138 4.138 23 C 0.502 3.498 24 O -0.581 6.581 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.271 0.729 38 H 0.093 0.907 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 -17.700 4.187 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.003 4.003 4 N -0.349 5.349 5 C -0.007 4.007 6 C -0.105 4.105 7 H 0.200 0.800 8 C 0.292 3.708 9 O -0.439 6.439 10 O -0.274 6.274 11 C 0.166 3.834 12 H 0.020 0.980 13 C -0.199 4.199 14 C -0.588 4.588 15 H 0.086 0.914 16 C -0.183 4.183 17 N -0.554 5.554 18 Si 0.803 3.197 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.178 4.178 23 C 0.291 3.709 24 O -0.461 6.461 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.250 -17.256 3.838 19.107 hybrid contribution 0.172 1.208 -0.622 1.369 sum -7.079 -16.048 3.217 17.832 Atomic orbital electron populations 1.21691 0.93909 1.02747 1.02200 1.21808 0.97125 0.95198 1.02547 1.21599 0.77144 0.98554 1.02956 1.48449 1.07074 1.72014 1.07387 1.22360 0.86816 1.04725 0.86843 1.22200 1.02166 0.86910 0.99240 0.79955 1.24287 0.79382 0.93054 0.74089 1.90589 1.43599 1.67211 1.42491 1.86452 1.40311 1.27582 1.73071 1.20309 0.95654 0.71782 0.95705 0.97992 1.21965 0.99096 1.03583 0.95214 1.21299 1.34050 0.93233 1.10254 0.91436 1.25806 0.96798 0.96553 0.99152 1.70005 1.45198 1.05127 1.35098 0.85277 0.79060 0.77152 0.78216 1.19735 1.20187 1.18487 1.22406 0.93282 1.07482 0.94649 1.21438 0.90698 0.74483 0.84271 1.90674 1.79605 1.52861 1.22992 0.91206 0.91439 0.93373 0.93324 0.89779 0.88742 0.92606 0.84545 0.89369 0.95339 0.93218 0.90335 0.91998 0.88805 0.81921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.35 16 2 C -0.13 -2.18 6.26 30.59 0.19 -1.99 16 3 C 0.12 2.68 5.93 86.38 0.51 3.19 16 4 N -0.62 -15.63 2.93 -818.00 -2.40 -18.03 16 5 C 0.11 2.21 6.73 86.83 0.58 2.79 16 6 C -0.09 -1.98 3.66 -10.48 -0.04 -2.01 16 7 H 0.18 2.42 8.14 -2.39 -0.02 2.40 16 8 C 0.45 17.19 7.22 71.24 0.51 17.70 16 9 O -0.55 -24.67 14.73 21.95 0.32 -24.35 16 10 O -0.36 -16.39 9.66 -51.34 -0.50 -16.89 16 11 C 0.22 11.88 2.56 29.85 0.08 11.96 16 12 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 13 C -0.14 -7.06 9.32 71.98 0.67 -6.39 16 14 C -0.55 -31.32 8.90 25.60 0.23 -31.09 16 15 H 0.07 3.75 7.81 -2.92 -0.02 3.73 16 16 C 0.02 0.93 5.30 84.65 0.45 1.38 16 17 N -0.92 -52.83 11.32 21.45 0.24 -52.58 16 18 Si 0.98 43.23 29.54 68.60 2.03 45.26 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 C -0.14 -3.35 6.40 30.59 0.20 -3.16 16 23 C 0.50 15.63 8.02 87.90 0.71 16.34 16 24 O -0.58 -23.16 17.59 -3.01 -0.05 -23.22 16 25 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.53 7.93 -2.39 -0.02 1.51 16 32 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.98 6.95 -2.38 -0.02 1.97 16 34 H 0.03 1.29 8.14 -2.38 -0.02 1.28 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 36 H 0.08 4.28 6.07 -2.39 -0.01 4.26 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.09 2.82 7.73 -2.39 -0.02 2.80 16 39 H 0.16 2.41 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.23 328.82 5.48 -70.76 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.03 Total: 11.69 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.80 Total: 7.36 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.16 Total: -70.61 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -0.23 Total: -64.45 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -76.23 5.48 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842311503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.380 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds