Wall clock time and date at job start Mon Mar 30 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52996 * 109.47044 * 119.99837 * 2 1 3 5 5 C 1.53000 * 115.56204 * 34.75516 * 4 2 1 6 6 C 1.53080 * 117.49614 * 249.04189 * 4 2 1 7 7 C 1.53003 * 117.50096 * 180.43875 * 4 2 1 8 8 H 1.09000 * 117.49549 * 359.97438 * 7 4 2 9 9 C 1.50703 * 117.50151 * 214.98152 * 7 4 2 10 10 O 1.21286 * 119.99584 * 48.14173 * 9 7 4 11 11 N 1.34771 * 119.99696 * 227.86432 * 9 7 4 12 12 C 1.37098 * 120.00172 * 356.88512 * 11 9 7 13 13 H 1.07998 * 120.00223 * 10.19855 * 12 11 9 14 14 C 1.38953 * 120.00062 * 190.19348 * 12 11 9 15 15 N 1.31414 * 119.99653 * 11.55260 * 14 12 11 16 16 Si 1.86798 * 120.00200 * 191.55155 * 14 12 11 17 17 H 1.48497 * 109.46904 * 60.00242 * 16 14 12 18 18 H 1.48495 * 109.47058 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47305 * 300.00047 * 16 14 12 20 20 C 1.46500 * 119.99875 * 176.88692 * 11 9 7 21 21 C 1.50697 * 109.47221 * 89.99902 * 20 11 9 22 22 O 1.20826 * 120.00114 * 0.02562 * 21 20 11 23 23 O 1.34234 * 119.99881 * 180.02562 * 21 20 11 24 24 H 1.09001 * 109.46903 * 300.00245 * 1 2 3 25 25 H 1.08999 * 109.47083 * 60.00222 * 1 2 3 26 26 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47216 * 240.00152 * 2 1 3 28 28 H 1.08998 * 109.47630 * 174.68803 * 3 2 1 29 29 H 1.09006 * 109.47138 * 294.68764 * 3 2 1 30 30 H 1.09003 * 109.47107 * 54.68478 * 3 2 1 31 31 H 1.09005 * 109.47078 * 205.68647 * 5 4 2 32 32 H 1.09006 * 109.47152 * 325.68427 * 5 4 2 33 33 H 1.08998 * 109.47223 * 85.68649 * 5 4 2 34 34 H 1.08996 * 117.51343 * 145.04154 * 6 4 2 35 35 H 1.08998 * 117.51078 * 359.97438 * 6 4 2 36 36 H 0.96999 * 120.00115 * 185.06646 * 15 14 12 37 37 H 1.09002 * 109.47260 * 210.00343 * 20 11 9 38 38 H 1.09000 * 109.46952 * 330.00021 * 20 11 9 39 39 H 0.96701 * 116.99903 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1909 -1.9028 1.7222 6 6 2.7335 0.1248 2.3201 7 6 3.5550 -0.8191 1.4396 8 1 4.1883 -0.3700 0.6745 9 6 4.0966 -2.0719 2.0785 10 8 3.7304 -3.1596 1.6863 11 7 4.9919 -1.9835 3.0820 12 6 5.4582 -0.7568 3.4786 13 1 4.9928 0.1439 3.1066 14 6 6.5297 -0.6724 4.3593 15 7 7.2394 -1.7434 4.6352 16 14 6.9612 0.9635 5.1512 17 1 5.8045 1.4491 5.9458 18 1 8.1358 0.7874 6.0425 19 1 7.2867 1.9545 4.0943 20 6 5.4669 -3.1984 3.7489 21 6 6.6916 -3.7150 3.0389 22 8 7.1237 -3.1284 2.0750 23 8 7.3025 -4.8270 3.4773 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1258 1.4440 0.0951 29 1 1.7565 1.9281 -0.9338 30 1 1.6010 1.9831 0.8386 31 1 1.3379 -2.0506 2.7922 32 1 0.1389 -1.6962 1.5251 33 1 1.4909 -2.8034 1.1865 34 1 2.5848 -0.1605 3.3615 35 1 2.8266 1.1947 2.1342 36 1 7.9401 -1.7018 5.3046 37 1 5.7168 -2.9700 4.7850 38 1 4.6846 -3.9569 3.7225 39 1 8.0843 -5.1199 2.9893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591057806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:38 Heat of formation + Delta-G solvation = -96.895635 kcal Electronic energy + Delta-G solvation = -21974.277256 eV Core-core repulsion = 18690.227294 eV Total energy + Delta-G solvation = -3284.049963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73869 -38.78668 -37.23397 -35.09594 -34.47540 -32.77279 -31.47694 -29.01834 -27.93508 -26.01556 -24.89045 -22.90139 -22.63888 -20.59207 -19.10071 -18.05991 -16.94326 -16.64755 -16.16162 -15.57731 -15.28238 -14.47002 -14.33757 -14.23143 -14.16882 -13.38976 -13.14738 -12.84079 -12.56966 -12.13454 -12.09851 -11.73442 -11.61191 -11.45022 -11.31311 -11.18903 -11.05840 -10.84312 -10.76583 -10.53131 -10.47865 -10.35172 -10.22476 -9.58563 -9.44681 -9.10142 -8.99167 -8.41522 -8.01201 -6.42448 -3.96412 3.09849 3.18037 3.19756 3.63072 3.79229 3.99083 4.20267 4.34898 4.72901 5.04057 5.10635 5.15846 5.26331 5.36022 5.53898 5.69654 5.74983 5.81710 6.00909 6.06332 6.12716 6.20084 6.23215 6.33040 6.37880 6.45372 6.50061 6.55649 6.64266 6.68399 6.76063 6.90488 6.93724 7.37237 7.57706 7.69507 8.29484 9.00229 9.25026 9.40261 9.79193 10.60251 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.007237 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.775454 B = 3868.125695 C = 4941.752278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.105 4.105 5 C -0.115 4.115 6 C -0.157 4.157 7 C -0.138 4.138 8 H 0.114 0.886 9 C 0.497 3.503 10 O -0.597 6.597 11 N -0.429 5.429 12 C -0.311 4.311 13 H 0.110 0.890 14 C 0.028 3.972 15 N -0.890 5.890 16 Si 0.931 3.069 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.152 3.848 21 C 0.504 3.496 22 O -0.521 6.521 23 O -0.534 6.534 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.272 0.728 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 3.175 -2.035 8.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.207 4.207 4 C -0.105 4.105 5 C -0.172 4.172 6 C -0.194 4.194 7 C -0.159 4.159 8 H 0.132 0.868 9 C 0.286 3.714 10 O -0.482 6.482 11 N -0.148 5.148 12 C -0.438 4.438 13 H 0.127 0.873 14 C -0.173 4.173 15 N -0.532 5.532 16 Si 0.757 3.243 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.026 3.974 21 C 0.345 3.655 22 O -0.408 6.408 23 O -0.345 6.345 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.158 0.842 38 H 0.093 0.907 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.882 2.931 -2.180 8.687 hybrid contribution 1.331 0.720 0.146 1.520 sum -6.551 3.650 -2.034 7.771 Atomic orbital electron populations 1.21880 0.95320 1.01750 1.01110 1.20549 0.95331 0.95265 0.96481 1.21966 1.01525 0.96018 1.01157 1.21581 0.92853 0.98923 0.97156 1.21433 0.97768 0.97067 1.00960 1.23309 1.02662 0.97049 0.96415 1.21950 0.93441 0.97824 1.02675 0.86787 1.19287 0.82782 0.88950 0.80350 1.90512 1.64565 1.29035 1.64096 1.43456 1.36176 1.05692 1.29461 1.19864 1.13219 0.84525 1.26194 0.87269 1.25201 0.94621 0.99079 0.98393 1.69729 1.21361 1.29106 1.32959 0.85923 0.78016 0.81300 0.79040 1.19829 1.20920 1.19897 1.20796 0.89970 0.87182 0.99413 1.23780 0.85064 0.75530 0.81091 1.90546 1.65164 1.56731 1.28359 1.84540 1.44604 1.44603 1.60719 0.92669 0.93263 0.92183 0.91124 0.92240 0.93172 0.92364 0.93067 0.92639 0.90925 0.88531 0.88517 0.91703 0.84156 0.90699 0.75642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.22 37.16 0.31 -1.34 16 2 C -0.06 -0.79 3.15 -90.62 -0.29 -1.07 16 3 C -0.15 -1.83 7.79 37.16 0.29 -1.54 16 4 C -0.10 -1.73 2.46 -154.47 -0.38 -2.11 16 5 C -0.12 -1.92 8.22 37.16 0.31 -1.62 16 6 C -0.16 -2.67 7.21 -26.69 -0.19 -2.86 16 7 C -0.14 -2.77 4.30 -91.77 -0.39 -3.16 16 8 H 0.11 2.28 7.56 -51.93 -0.39 1.88 16 9 C 0.50 12.09 6.70 -10.99 -0.07 12.01 16 10 O -0.60 -15.67 14.78 5.55 0.08 -15.59 16 11 N -0.43 -10.80 2.11 -116.10 -0.25 -11.04 16 12 C -0.31 -7.74 9.12 -14.93 -0.14 -7.87 16 13 H 0.11 2.55 5.54 -52.49 -0.29 2.26 16 14 C 0.03 0.70 5.21 -17.47 -0.09 0.61 16 15 N -0.89 -22.86 8.50 55.50 0.47 -22.39 16 16 Si 0.93 19.44 29.57 -169.99 -5.03 14.41 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 C 0.15 3.71 5.22 -5.20 -0.03 3.68 16 21 C 0.50 12.62 6.45 36.00 0.23 12.85 16 22 O -0.52 -14.79 17.12 -18.75 -0.32 -15.11 16 23 O -0.53 -11.09 13.42 -39.27 -0.53 -11.62 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.78 6.68 -51.93 -0.35 0.43 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.67 7.32 -51.93 -0.38 0.29 16 31 H 0.05 0.90 7.90 -51.93 -0.41 0.49 16 32 H 0.05 0.76 5.58 -51.93 -0.29 0.47 16 33 H 0.07 1.37 6.98 -51.93 -0.36 1.00 16 34 H 0.10 1.73 8.05 -51.93 -0.42 1.31 16 35 H 0.10 1.44 5.89 -51.93 -0.31 1.14 16 36 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 37 H 0.14 3.44 5.95 -51.93 -0.31 3.13 16 38 H 0.08 1.74 7.47 -51.93 -0.39 1.35 16 39 H 0.39 6.30 9.10 45.56 0.41 6.71 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -30.99 312.24 -5.95 -36.93 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.64 Total: 12.12 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.45 Total: 7.58 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.23 Total: -33.43 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.77 Total: -42.32 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.99 -5.95 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591057806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.961 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds