Wall clock time and date at job start Mon Mar 30 2020 00:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.52996 * 109.47044 * 119.99837 * 2 1 3 5 5 C 1.53000 * 115.56204 * 34.75516 * 4 2 1 6 6 C 1.53080 * 117.49614 * 249.04189 * 4 2 1 7 7 C 1.53003 * 117.50096 * 180.43875 * 4 2 1 8 8 H 1.09000 * 117.49549 * 359.97438 * 7 4 2 9 9 C 1.50703 * 117.50151 * 214.98152 * 7 4 2 10 10 O 1.21286 * 119.99584 * 48.14173 * 9 7 4 11 11 N 1.34771 * 119.99696 * 227.86432 * 9 7 4 12 12 C 1.37098 * 120.00172 * 356.88512 * 11 9 7 13 13 H 1.07998 * 120.00223 * 10.19855 * 12 11 9 14 14 C 1.38953 * 120.00062 * 190.19348 * 12 11 9 15 15 N 1.31414 * 119.99653 * 11.55260 * 14 12 11 16 16 Si 1.86798 * 120.00200 * 191.55155 * 14 12 11 17 17 H 1.48497 * 109.46904 * 60.00242 * 16 14 12 18 18 H 1.48495 * 109.47058 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47305 * 300.00047 * 16 14 12 20 20 C 1.46500 * 119.99875 * 176.88692 * 11 9 7 21 21 C 1.50697 * 109.47221 * 89.99902 * 20 11 9 22 22 O 1.20826 * 120.00114 * 0.02562 * 21 20 11 23 23 O 1.34234 * 119.99881 * 180.02562 * 21 20 11 24 24 H 1.09001 * 109.46903 * 300.00245 * 1 2 3 25 25 H 1.08999 * 109.47083 * 60.00222 * 1 2 3 26 26 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47216 * 240.00152 * 2 1 3 28 28 H 1.08998 * 109.47630 * 174.68803 * 3 2 1 29 29 H 1.09006 * 109.47138 * 294.68764 * 3 2 1 30 30 H 1.09003 * 109.47107 * 54.68478 * 3 2 1 31 31 H 1.09005 * 109.47078 * 205.68647 * 5 4 2 32 32 H 1.09006 * 109.47152 * 325.68427 * 5 4 2 33 33 H 1.08998 * 109.47223 * 85.68649 * 5 4 2 34 34 H 1.08996 * 117.51343 * 145.04154 * 6 4 2 35 35 H 1.08998 * 117.51078 * 359.97438 * 6 4 2 36 36 H 0.96999 * 120.00115 * 185.06646 * 15 14 12 37 37 H 1.09002 * 109.47260 * 210.00343 * 20 11 9 38 38 H 1.09000 * 109.46952 * 330.00021 * 20 11 9 39 39 H 0.96701 * 116.99903 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.1909 -1.9028 1.7222 6 6 2.7335 0.1248 2.3201 7 6 3.5550 -0.8191 1.4396 8 1 4.1883 -0.3700 0.6745 9 6 4.0966 -2.0719 2.0785 10 8 3.7304 -3.1596 1.6863 11 7 4.9919 -1.9835 3.0820 12 6 5.4582 -0.7568 3.4786 13 1 4.9928 0.1439 3.1066 14 6 6.5297 -0.6724 4.3593 15 7 7.2394 -1.7434 4.6352 16 14 6.9612 0.9635 5.1512 17 1 5.8045 1.4491 5.9458 18 1 8.1358 0.7874 6.0425 19 1 7.2867 1.9545 4.0943 20 6 5.4669 -3.1984 3.7489 21 6 6.6916 -3.7150 3.0389 22 8 7.1237 -3.1284 2.0750 23 8 7.3025 -4.8270 3.4773 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1258 1.4440 0.0951 29 1 1.7565 1.9281 -0.9338 30 1 1.6010 1.9831 0.8386 31 1 1.3379 -2.0506 2.7922 32 1 0.1389 -1.6962 1.5251 33 1 1.4909 -2.8034 1.1865 34 1 2.5848 -0.1605 3.3615 35 1 2.8266 1.1947 2.1342 36 1 7.9401 -1.7018 5.3046 37 1 5.7168 -2.9700 4.7850 38 1 4.6846 -3.9569 3.7225 39 1 8.0843 -5.1199 2.9893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591057806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:38 Heat of formation + Delta-G solvation = -115.750017 kcal Electronic energy + Delta-G solvation = -21975.094844 eV Core-core repulsion = 18690.227294 eV Total energy + Delta-G solvation = -3284.867550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46557 -40.55734 -38.86567 -36.98537 -36.43261 -33.99908 -33.36474 -30.37164 -29.68570 -27.19139 -26.69446 -24.56124 -23.81503 -22.39467 -20.94560 -19.48279 -18.84981 -18.31566 -17.86964 -17.38041 -16.88696 -16.18557 -16.17480 -16.00431 -15.33254 -15.01967 -14.80987 -14.11240 -13.85950 -13.77629 -13.43316 -13.35573 -13.26595 -13.14530 -12.64474 -12.55343 -12.43538 -12.33223 -12.19516 -12.18086 -12.08896 -11.87757 -11.55571 -11.47668 -10.96223 -10.86703 -10.49311 -10.20355 -9.93751 -8.30621 -5.90312 1.43480 1.48299 1.58469 1.73613 1.89036 2.25556 2.52231 2.74798 3.05390 3.24725 3.81958 3.89210 4.01465 4.06076 4.32460 4.35678 4.53035 4.66362 4.71409 4.86029 4.87514 4.89771 4.95342 4.99817 5.04192 5.07442 5.13964 5.21770 5.28449 5.29135 5.46989 5.50109 5.55208 5.62821 5.71407 5.89821 6.38992 7.09476 7.37341 7.51395 7.90215 8.72146 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.007237 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.775454 B = 3868.125695 C = 4941.752278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.088 4.088 5 C -0.113 4.113 6 C -0.139 4.139 7 C -0.170 4.170 8 H 0.111 0.889 9 C 0.486 3.514 10 O -0.627 6.627 11 N -0.440 5.440 12 C -0.327 4.327 13 H 0.121 0.879 14 C -0.016 4.016 15 N -0.914 5.914 16 Si 0.997 3.003 17 H -0.257 1.257 18 H -0.288 1.288 19 H -0.272 1.272 20 C 0.148 3.852 21 C 0.507 3.493 22 O -0.561 6.561 23 O -0.521 6.521 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.271 0.729 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 5.149 -1.962 10.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.089 4.089 5 C -0.169 4.169 6 C -0.175 4.175 7 C -0.191 4.191 8 H 0.129 0.871 9 C 0.276 3.724 10 O -0.515 6.515 11 N -0.158 5.158 12 C -0.454 4.454 13 H 0.139 0.861 14 C -0.214 4.214 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.182 1.182 18 H -0.213 1.213 19 H -0.198 1.198 20 C 0.023 3.977 21 C 0.350 3.650 22 O -0.452 6.452 23 O -0.333 6.333 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.047 4.884 -2.096 10.493 hybrid contribution 1.732 -0.024 0.114 1.736 sum -7.315 4.860 -1.982 9.003 Atomic orbital electron populations 1.21853 0.93205 1.02096 1.02534 1.20612 0.97044 0.95738 0.94261 1.21948 1.00684 0.95086 1.02731 1.21781 0.90232 0.98599 0.98297 1.21408 0.99851 0.96158 0.99519 1.23343 1.00585 0.97945 0.95671 1.21875 0.95701 0.97354 1.04123 0.87120 1.20046 0.82291 0.90090 0.79940 1.90470 1.65448 1.30608 1.64934 1.43703 1.36317 1.05992 1.29809 1.20243 1.13689 0.84852 1.26620 0.86122 1.26099 0.94296 1.02370 0.98616 1.69826 1.21663 1.30896 1.33216 0.84910 0.77879 0.77156 0.77975 1.18179 1.21329 1.19765 1.20827 0.90065 0.87533 0.99318 1.23854 0.85071 0.75769 0.80282 1.90520 1.66364 1.58243 1.30037 1.84466 1.45500 1.42848 1.60446 0.91844 0.91286 0.92382 0.92001 0.93545 0.91249 0.91252 0.94614 0.89310 0.93550 0.89558 0.85929 0.91849 0.84360 0.90336 0.73095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.22 71.98 0.59 -2.14 16 2 C -0.06 -1.45 3.15 -10.80 -0.03 -1.49 16 3 C -0.15 -3.17 7.79 71.98 0.56 -2.61 16 4 C -0.09 -2.83 2.46 -52.16 -0.13 -2.96 16 5 C -0.11 -3.70 8.22 71.98 0.59 -3.11 16 6 C -0.14 -4.50 7.21 30.62 0.22 -4.28 16 7 C -0.17 -6.83 4.30 -11.54 -0.05 -6.88 16 8 H 0.11 4.48 7.56 -2.39 -0.02 4.46 16 9 C 0.49 24.22 6.70 87.66 0.59 24.80 16 10 O -0.63 -34.10 14.78 -3.05 -0.05 -34.14 16 11 N -0.44 -22.59 2.11 -639.61 -1.35 -23.94 16 12 C -0.33 -16.34 9.12 84.04 0.77 -15.57 16 13 H 0.12 5.57 5.54 -2.91 -0.02 5.55 16 14 C -0.02 -0.76 5.21 84.93 0.44 -0.32 16 15 N -0.91 -47.17 8.50 21.66 0.18 -46.99 16 16 Si 1.00 39.14 29.57 68.60 2.03 41.17 16 17 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 18 H -0.29 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 20 C 0.15 7.41 5.22 85.63 0.45 7.85 16 21 C 0.51 25.78 6.45 71.23 0.46 26.24 16 22 O -0.56 -32.52 17.12 21.97 0.38 -32.14 16 23 O -0.52 -21.48 13.42 -51.45 -0.69 -22.17 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.16 6.43 -2.39 -0.02 1.14 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.12 6.68 -2.39 -0.02 1.10 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.34 7.32 -2.39 -0.02 1.32 16 31 H 0.03 1.25 7.90 -2.38 -0.02 1.23 16 32 H 0.09 2.28 5.58 -2.38 -0.01 2.26 16 33 H 0.05 1.77 6.98 -2.39 -0.02 1.75 16 34 H 0.09 3.00 8.05 -2.39 -0.02 2.98 16 35 H 0.12 3.33 5.89 -2.39 -0.01 3.31 16 36 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 37 H 0.14 6.93 5.95 -2.39 -0.01 6.92 16 38 H 0.08 3.77 7.47 -2.39 -0.02 3.75 16 39 H 0.41 12.98 9.10 -74.06 -0.67 12.30 16 Total: -1.00 -67.45 312.24 5.36 -62.10 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.40 Total: 36.58 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 4.46 Total: 19.54 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.17 Total: -70.92 kcal Atomic # 8 Polarization: -88.10 SS G_CDS: -0.36 Total: -88.46 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -67.45 5.36 -62.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591057806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.654 kcal (2) G-P(sol) polarization free energy of solvation -67.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds