Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.52999 * 109.46969 * 299.99631 * 7 5 4 9 9 C 1.53003 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46813 * 60.00348 * 9 8 7 11 11 C 1.52999 * 109.47022 * 299.99677 * 10 9 8 12 12 C 1.53003 * 109.47062 * 60.00476 * 11 10 9 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 O 1.21210 * 120.00171 * 240.00336 * 13 2 1 15 15 O 1.34313 * 119.99638 * 60.00035 * 13 2 1 16 16 C 1.34913 * 116.99828 * 180.02562 * 15 13 2 17 17 H 1.08003 * 120.00517 * 359.97438 * 16 15 13 18 18 C 1.38760 * 120.00117 * 180.02562 * 16 15 13 19 19 N 1.31441 * 119.99572 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46849 * 90.00078 * 20 18 16 22 22 H 1.48501 * 109.47089 * 210.00335 * 20 18 16 23 23 H 1.48504 * 109.46879 * 330.00157 * 20 18 16 24 24 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 25 25 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 26 26 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 28 28 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 29 29 H 1.09001 * 109.47339 * 300.00351 * 8 7 5 30 30 H 1.08996 * 109.47277 * 60.00292 * 8 7 5 31 31 H 1.08993 * 109.47243 * 299.99933 * 9 8 7 32 32 H 1.09001 * 109.46902 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46769 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.47555 * 59.99776 * 10 9 8 35 35 H 1.09001 * 109.47339 * 300.00413 * 11 10 9 36 36 H 1.09006 * 109.47230 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.46902 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47243 * 60.00067 * 12 11 10 39 39 H 0.97007 * 119.99792 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 1.6938 -1.8800 3.9312 9 6 2.1974 -2.6025 5.1823 10 6 2.2496 -1.6187 6.3530 11 6 3.1993 -0.4689 6.0109 12 6 2.6956 0.2535 4.7598 13 6 2.0324 -0.7105 -1.2304 14 8 2.7292 -1.6960 -1.1192 15 8 1.7079 -0.2516 -2.4503 16 6 2.1898 -0.9341 -3.5096 17 1 2.8069 -1.8068 -3.3544 18 6 1.8936 -0.5144 -4.7986 19 7 1.1438 0.5486 -4.9875 20 14 2.5614 -1.4589 -6.2653 21 1 1.5950 -2.5171 -6.6542 22 1 2.7610 -0.5276 -7.4046 23 1 3.8594 -2.0829 -5.9028 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2490 -1.6319 1.1526 28 1 3.6414 -1.1266 3.4024 29 1 0.6957 -1.4836 4.1179 30 1 1.6562 -2.5806 3.0970 31 1 3.1955 -2.9988 4.9959 32 1 1.5206 -3.4213 5.4262 33 1 2.6081 -2.1335 7.2444 34 1 1.2516 -1.2224 6.5393 35 1 4.1975 -0.8653 5.8245 36 1 3.2369 0.2317 6.8451 37 1 3.3725 1.0724 4.5159 38 1 1.6976 0.6499 4.9461 39 1 0.9370 0.8423 -5.8886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052382908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -148.088406 kcal Electronic energy + Delta-G solvation = -20827.638991 eV Core-core repulsion = 17541.369143 eV Total energy + Delta-G solvation = -3286.269848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26701 -39.09090 -37.63590 -35.65346 -34.36298 -32.26807 -31.73622 -30.88053 -29.82132 -25.69817 -24.44614 -23.21466 -22.64905 -20.60048 -19.88490 -19.72495 -17.82717 -17.55158 -16.09385 -15.97858 -15.32865 -14.98384 -14.80446 -14.40640 -14.39744 -14.24435 -13.86367 -13.55120 -12.98924 -12.72945 -12.48821 -12.36259 -12.15062 -11.82174 -11.65385 -11.42068 -11.30124 -11.28396 -11.09617 -10.80863 -10.58476 -10.50260 -10.45921 -10.27609 -9.89012 -9.53759 -9.19389 -8.83704 -8.64170 -6.47194 -4.15778 2.78642 3.05255 3.11741 3.19388 3.27384 3.41567 3.93854 4.47852 4.50105 4.53661 4.57575 5.01738 5.02463 5.05955 5.11014 5.23732 5.29921 5.34501 5.44995 5.54482 5.58750 5.66481 5.84108 5.88814 5.91577 5.95460 5.99521 6.05044 6.15768 6.18623 6.28379 6.45376 6.52654 6.80786 7.32485 7.73372 7.86975 8.40372 8.58072 9.00825 9.74065 10.70113 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042430 B = 0.003628 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.753609 B = 7716.198973 C = 7992.700370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.160 3.840 3 H 0.112 0.888 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.544 6.544 7 C -0.104 4.104 8 C -0.112 4.112 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.120 4.120 12 C -0.098 4.098 13 C 0.392 3.608 14 O -0.557 6.557 15 O -0.204 6.204 16 C -0.385 4.385 17 H 0.097 0.903 18 C 0.044 3.956 19 N -0.860 5.860 20 Si 0.945 3.055 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.266 1.266 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.408 0.592 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -4.037 18.232 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.130 0.870 4 N -0.362 5.362 5 C 0.305 3.695 6 O -0.422 6.422 7 C -0.126 4.126 8 C -0.150 4.150 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.157 4.157 12 C -0.136 4.136 13 C 0.238 3.762 14 O -0.455 6.455 15 O -0.109 6.109 16 C -0.461 4.461 17 H 0.114 0.886 18 C -0.161 4.161 19 N -0.497 5.497 20 Si 0.769 3.231 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.245 0.755 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.596 -3.299 18.060 18.369 hybrid contribution 0.469 -0.901 -0.892 1.352 sum 1.065 -4.200 17.168 17.706 Atomic orbital electron populations 1.22046 0.92835 1.02655 1.03504 1.20116 0.95496 0.97294 0.81738 0.87039 1.45876 1.66887 1.14835 1.08645 1.20631 0.77363 0.87184 0.84317 1.90684 1.50224 1.16039 1.85217 1.21338 1.01091 0.97064 0.93083 1.21544 0.98810 0.96192 0.98436 1.21528 1.01589 0.97814 0.94585 1.21566 1.00039 0.96531 0.97760 1.21565 0.99117 0.97445 0.97607 1.21339 1.02720 0.96957 0.92618 1.23041 0.81950 0.84982 0.86241 1.90534 1.39684 1.27970 1.87274 1.83859 1.63114 1.51501 1.12476 1.21249 1.32011 1.11107 0.81751 0.88569 1.25362 0.96270 0.96486 0.97982 1.69995 1.34310 1.22545 1.22825 0.85655 0.79379 0.78738 0.79310 1.19818 1.20253 1.19071 0.91694 0.89795 0.92321 0.75540 0.88482 0.91286 0.91201 0.91694 0.91684 0.92107 0.91921 0.91940 0.91778 0.91212 0.91155 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.42 37.16 0.35 -2.27 16 2 C 0.16 3.09 3.09 -69.08 -0.21 2.87 16 3 H 0.11 2.23 7.58 -51.93 -0.39 1.83 16 4 N -0.71 -11.62 4.84 -54.93 -0.27 -11.89 16 5 C 0.52 7.99 7.12 -10.98 -0.08 7.91 16 6 O -0.54 -10.09 15.64 5.56 0.09 -10.00 16 7 C -0.10 -1.18 2.53 -91.77 -0.23 -1.42 16 8 C -0.11 -1.08 5.10 -26.73 -0.14 -1.21 16 9 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 10 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 11 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 12 C -0.10 -1.05 4.49 -26.73 -0.12 -1.17 16 13 C 0.39 9.49 7.27 36.01 0.26 9.76 16 14 O -0.56 -14.26 15.07 -19.05 -0.29 -14.55 16 15 O -0.20 -5.74 9.65 -20.69 -0.20 -5.94 16 16 C -0.39 -11.22 9.65 30.93 0.30 -10.92 16 17 H 0.10 2.81 6.86 -52.48 -0.36 2.45 16 18 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 19 N -0.86 -24.89 13.67 55.48 0.76 -24.14 16 20 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.41 6.32 7.22 -40.82 -0.29 6.03 16 28 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.66 7.57 -51.93 -0.39 0.27 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -32.59 324.93 -6.54 -39.13 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.07 Total: 5.15 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.44 Total: 1.36 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.49 Total: -36.02 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.40 Total: -30.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.59 -6.54 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052382908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.958 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds