Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.52999 * 109.46969 * 299.99631 * 7 5 4 9 9 C 1.53003 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46813 * 60.00348 * 9 8 7 11 11 C 1.52999 * 109.47022 * 299.99677 * 10 9 8 12 12 C 1.53003 * 109.47062 * 60.00476 * 11 10 9 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 O 1.21210 * 120.00171 * 240.00336 * 13 2 1 15 15 O 1.34313 * 119.99638 * 60.00035 * 13 2 1 16 16 C 1.34913 * 116.99828 * 180.02562 * 15 13 2 17 17 H 1.08003 * 120.00517 * 359.97438 * 16 15 13 18 18 C 1.38760 * 120.00117 * 180.02562 * 16 15 13 19 19 N 1.31441 * 119.99572 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00274 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46849 * 90.00078 * 20 18 16 22 22 H 1.48501 * 109.47089 * 210.00335 * 20 18 16 23 23 H 1.48504 * 109.46879 * 330.00157 * 20 18 16 24 24 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 25 25 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 26 26 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 28 28 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 29 29 H 1.09001 * 109.47339 * 300.00351 * 8 7 5 30 30 H 1.08996 * 109.47277 * 60.00292 * 8 7 5 31 31 H 1.08993 * 109.47243 * 299.99933 * 9 8 7 32 32 H 1.09001 * 109.46902 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46769 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.47555 * 59.99776 * 10 9 8 35 35 H 1.09001 * 109.47339 * 300.00413 * 11 10 9 36 36 H 1.09006 * 109.47230 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.46902 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47243 * 60.00067 * 12 11 10 39 39 H 0.97007 * 119.99792 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 1.6938 -1.8800 3.9312 9 6 2.1974 -2.6025 5.1823 10 6 2.2496 -1.6187 6.3530 11 6 3.1993 -0.4689 6.0109 12 6 2.6956 0.2535 4.7598 13 6 2.0324 -0.7105 -1.2304 14 8 2.7292 -1.6960 -1.1192 15 8 1.7079 -0.2516 -2.4503 16 6 2.1898 -0.9341 -3.5096 17 1 2.8069 -1.8068 -3.3544 18 6 1.8936 -0.5144 -4.7986 19 7 1.1438 0.5486 -4.9875 20 14 2.5614 -1.4589 -6.2653 21 1 1.5950 -2.5171 -6.6542 22 1 2.7610 -0.5276 -7.4046 23 1 3.8594 -2.0829 -5.9028 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2490 -1.6319 1.1526 28 1 3.6414 -1.1266 3.4024 29 1 0.6957 -1.4836 4.1179 30 1 1.6562 -2.5806 3.0970 31 1 3.1955 -2.9988 4.9959 32 1 1.5206 -3.4213 5.4262 33 1 2.6081 -2.1335 7.2444 34 1 1.2516 -1.2224 6.5393 35 1 4.1975 -0.8653 5.8245 36 1 3.2369 0.2317 6.8451 37 1 3.3725 1.0724 4.5159 38 1 1.6976 0.6499 4.9461 39 1 0.9370 0.8423 -5.8886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052382908.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -168.496529 kcal Electronic energy + Delta-G solvation = -20828.523953 eV Core-core repulsion = 17541.369143 eV Total energy + Delta-G solvation = -3287.154811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68337 -40.83424 -38.63930 -37.53752 -36.02657 -34.36585 -32.85230 -31.62715 -31.01783 -27.75338 -25.88261 -24.43335 -23.42909 -21.97596 -21.36891 -20.62792 -19.94749 -19.01948 -17.78491 -17.50419 -16.76741 -16.43378 -16.32475 -16.13983 -15.57644 -15.07650 -14.99907 -14.79461 -14.50834 -14.08897 -13.67828 -13.55842 -13.32557 -13.21841 -13.12898 -13.05023 -12.70721 -12.40510 -12.22281 -12.18255 -12.03463 -12.02069 -11.54870 -11.33918 -11.13501 -10.99465 -10.73788 -10.72728 -10.31199 -8.57369 -6.38148 1.22167 1.32902 1.48878 1.53413 1.57351 1.78990 2.19334 2.69368 2.94291 3.54043 3.74278 3.79715 3.99025 4.00822 4.24290 4.28770 4.32982 4.39886 4.45793 4.56795 4.61654 4.67502 4.73174 4.76441 4.98786 5.07823 5.11509 5.13842 5.18462 5.26867 5.27225 5.28966 5.38145 5.42164 5.58274 5.77130 6.42808 6.51997 6.86720 7.11433 7.65640 8.62665 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042430 B = 0.003628 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.753609 B = 7716.198973 C = 7992.700370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.169 3.831 3 H 0.104 0.896 4 N -0.705 5.705 5 C 0.518 3.482 6 O -0.577 6.577 7 C -0.097 4.097 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.121 4.121 11 C -0.115 4.115 12 C -0.097 4.097 13 C 0.394 3.606 14 O -0.571 6.571 15 O -0.233 6.233 16 C -0.423 4.423 17 H 0.086 0.914 18 C -0.002 4.002 19 N -0.899 5.899 20 Si 1.019 2.981 21 H -0.258 1.258 22 H -0.262 1.262 23 H -0.263 1.263 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.414 0.586 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -5.415 19.089 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.062 3.938 3 H 0.122 0.878 4 N -0.360 5.360 5 C 0.307 3.693 6 O -0.456 6.456 7 C -0.118 4.118 8 C -0.148 4.148 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.152 4.152 12 C -0.135 4.135 13 C 0.241 3.759 14 O -0.469 6.469 15 O -0.139 6.139 16 C -0.499 4.499 17 H 0.104 0.896 18 C -0.203 4.203 19 N -0.536 5.536 20 Si 0.838 3.162 21 H -0.183 1.183 22 H -0.186 1.186 23 H -0.187 1.187 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.252 0.748 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.001 -4.686 18.955 19.551 hybrid contribution 0.347 -0.435 -1.057 1.195 sum 1.348 -5.121 17.897 18.665 Atomic orbital electron populations 1.21962 0.91031 1.03342 1.03655 1.20022 0.96773 0.96390 0.80635 0.87786 1.45881 1.67100 1.15013 1.07957 1.21433 0.76239 0.86869 0.84792 1.90670 1.51606 1.17642 1.85676 1.21404 1.01986 0.97450 0.90962 1.21559 0.98092 0.95507 0.99616 1.21529 1.02189 0.97929 0.93533 1.21574 0.99764 0.96197 0.98260 1.21545 0.99563 0.97723 0.96394 1.21332 1.01847 0.96718 0.93610 1.23978 0.80727 0.84614 0.86546 1.90503 1.40077 1.28739 1.87570 1.83881 1.64143 1.52312 1.13606 1.21488 1.33584 1.11862 0.82954 0.89590 1.26578 0.95891 0.97281 1.00556 1.70082 1.35236 1.23992 1.24245 0.84600 0.78866 0.77670 0.75076 1.18283 1.18594 1.18666 0.89959 0.91118 0.91370 0.74836 0.87071 0.91812 0.91027 0.90970 0.90527 0.90491 0.92192 0.91137 0.90907 0.92613 0.92366 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.42 71.98 0.68 -4.19 16 2 C 0.17 6.58 3.09 44.25 0.14 6.72 16 3 H 0.10 4.26 7.58 -2.39 -0.02 4.24 16 4 N -0.71 -22.85 4.84 -446.10 -2.16 -25.01 16 5 C 0.52 15.71 7.12 87.65 0.62 16.34 16 6 O -0.58 -21.42 15.64 -3.04 -0.05 -21.47 16 7 C -0.10 -2.07 2.53 -11.54 -0.03 -2.10 16 8 C -0.11 -1.91 5.10 30.60 0.16 -1.75 16 9 C -0.11 -1.48 5.92 30.60 0.18 -1.30 16 10 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 11 C -0.11 -1.64 5.92 30.60 0.18 -1.46 16 12 C -0.10 -1.98 4.49 30.60 0.14 -1.84 16 13 C 0.39 19.51 7.27 71.24 0.52 20.03 16 14 O -0.57 -29.62 15.07 20.77 0.31 -29.31 16 15 O -0.23 -13.51 9.65 14.93 0.14 -13.36 16 16 C -0.42 -25.25 9.65 67.94 0.66 -24.59 16 17 H 0.09 5.15 6.86 -2.91 -0.02 5.13 16 18 C 0.00 -0.12 5.49 84.88 0.47 0.35 16 19 N -0.90 -52.58 13.67 21.63 0.30 -52.29 16 20 Si 1.02 42.62 29.55 68.60 2.03 44.65 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 26 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.41 12.53 7.22 -92.70 -0.67 11.86 16 28 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.22 7.57 -2.39 -0.02 1.21 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 39 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -71.08 324.93 4.83 -66.25 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.37 Total: 25.65 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 3.89 Total: 4.89 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -1.86 Total: -77.29 kcal Atomic # 8 Polarization: -64.55 SS G_CDS: 0.41 Total: -64.14 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.08 4.83 -66.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052382908.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.245 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds