Wall clock time and date at job start Mon Mar 30 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47576 * 2 1 4 4 C 1.50706 * 109.47236 * 239.99942 * 2 1 3 5 5 C 1.38251 * 119.96837 * 206.18342 * 4 2 1 6 6 C 1.38216 * 120.07205 * 179.72538 * 5 4 2 7 7 C 1.38407 * 119.99620 * 0.54826 * 6 5 4 8 8 F 1.35100 * 120.03201 * 179.74348 * 7 6 5 9 9 C 1.38650 * 119.93322 * 359.73237 * 7 6 5 10 10 F 1.35100 * 120.03914 * 180.02562 * 9 7 6 11 11 C 1.38221 * 119.96163 * 26.46002 * 4 2 1 12 12 N 1.46904 * 109.47455 * 120.00009 * 2 1 3 13 13 C 1.46903 * 110.99581 * 53.46742 * 12 2 1 14 14 C 1.46892 * 110.99969 * 289.51542 * 12 2 1 15 15 C 1.53000 * 109.47045 * 189.99648 * 14 12 2 16 16 C 1.50705 * 109.46937 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00170 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99837 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00011 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47486 * 89.99541 * 20 18 16 22 22 H 1.48496 * 109.47284 * 210.00107 * 20 18 16 23 23 H 1.48510 * 109.46812 * 329.99698 * 20 18 16 24 24 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47500 * 59.99965 * 1 2 3 26 26 H 1.09002 * 109.46967 * 299.99990 * 1 2 3 27 27 H 1.08006 * 119.96429 * 0.02562 * 5 4 2 28 28 H 1.07998 * 120.00153 * 180.28154 * 6 5 4 29 29 H 1.07995 * 119.99910 * 0.02562 * 11 4 2 30 30 H 1.09006 * 109.46960 * 53.82700 * 13 12 2 31 31 H 1.09006 * 109.47039 * 173.82583 * 13 12 2 32 32 H 1.08993 * 109.47338 * 293.82923 * 13 12 2 33 33 H 1.08996 * 109.47656 * 310.00053 * 14 12 2 34 34 H 1.09002 * 109.46947 * 69.99999 * 14 12 2 35 35 H 1.09004 * 109.47171 * 300.00033 * 15 14 12 36 36 H 1.09002 * 109.46961 * 60.00360 * 15 14 12 37 37 H 0.96999 * 120.00080 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 3.2759 -1.3145 -1.2198 6 6 3.7364 -1.9715 -2.3453 7 6 2.9571 -2.0154 -3.4883 8 9 3.4087 -2.6530 -4.5905 9 6 1.7124 -1.4047 -3.5009 10 9 0.9498 -1.4466 -4.6153 11 6 1.2517 -0.7525 -2.3704 12 7 2.0197 -0.6925 1.1994 13 6 1.4255 -2.0311 1.3139 14 6 1.7633 0.1024 2.4078 15 6 2.4993 -0.5223 3.5948 16 6 2.2368 0.2937 4.8344 17 1 1.6075 1.1698 4.7810 18 6 2.7990 -0.0790 6.0369 19 7 2.5703 0.6332 7.1185 20 14 3.8868 -1.5948 6.1295 21 1 5.2975 -1.2082 5.8735 22 1 3.7770 -2.2011 7.4806 23 1 3.4504 -2.5804 5.1078 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 3.8861 -1.2771 -0.3295 28 1 4.7060 -2.4469 -2.3342 29 1 0.2826 -0.2760 -2.3790 30 1 1.5962 -2.5846 0.3905 31 1 1.8858 -2.5629 2.1467 32 1 0.3537 -1.9391 1.4894 33 1 2.1193 1.1212 2.2549 34 1 0.6927 0.1184 2.6117 35 1 2.1433 -1.5411 3.7478 36 1 3.5700 -0.5382 3.3909 37 1 2.9655 0.3708 7.9646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078486644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:00 Heat of formation + Delta-G solvation = -62.822052 kcal Electronic energy + Delta-G solvation = -20271.217973 eV Core-core repulsion = 16877.558036 eV Total energy + Delta-G solvation = -3393.659937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.58546 -48.66443 -39.87931 -37.39409 -33.52072 -32.16311 -30.90298 -29.69068 -28.74943 -26.42240 -24.91382 -23.02848 -22.87448 -20.63899 -19.56695 -18.08348 -17.26692 -16.93423 -16.88571 -16.43268 -15.45099 -15.18335 -15.08380 -14.72174 -14.43324 -14.25889 -14.11481 -13.64036 -13.41766 -12.71144 -12.56507 -12.54670 -12.42946 -11.95413 -11.66741 -11.53579 -11.33916 -11.24265 -10.95167 -10.92887 -10.16252 -9.80658 -9.77616 -9.24480 -9.22018 -8.70264 -8.56103 -7.98181 -6.07550 -4.06066 0.78133 0.86383 3.22797 3.29879 3.37340 3.40705 3.63427 4.03371 4.29519 4.42950 4.46687 4.54773 4.88326 4.99582 5.13540 5.23569 5.27146 5.43869 5.55988 5.62179 5.68307 5.71426 5.82227 5.85900 5.99772 6.06842 6.14033 6.25370 6.29868 6.35509 6.62980 6.70614 7.07291 7.22480 7.49002 7.52206 7.79979 8.49065 8.96383 9.54821 11.05804 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034195 B = 0.003934 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.634433 B = 7116.509428 C = 7686.021742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.115 3.885 3 H 0.100 0.900 4 C -0.050 4.050 5 C -0.072 4.072 6 C -0.129 4.129 7 C 0.057 3.943 8 F -0.134 7.134 9 C 0.061 3.939 10 F -0.133 7.133 11 C -0.129 4.129 12 N -0.536 5.536 13 C 0.019 3.981 14 C 0.070 3.930 15 C -0.007 4.007 16 C -0.522 4.522 17 H 0.070 0.930 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.016 0.984 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -4.544 -19.881 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.007 3.993 3 H 0.118 0.882 4 C -0.051 4.051 5 C -0.091 4.091 6 C -0.148 4.148 7 C 0.037 3.963 8 F -0.113 7.113 9 C 0.041 3.959 10 F -0.112 7.112 11 C -0.148 4.148 12 N -0.259 5.259 13 C -0.129 4.129 14 C -0.056 4.056 15 C -0.045 4.045 16 C -0.561 4.561 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.542 5.542 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.173 0.827 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.681 -4.613 -19.805 20.346 hybrid contribution -0.395 -0.795 -0.166 0.903 sum -1.076 -5.408 -19.971 20.718 Atomic orbital electron populations 1.22550 0.96783 1.02730 1.02638 1.20603 0.92941 0.97801 0.87991 0.88237 1.19872 0.93861 0.97086 0.94266 1.21202 0.95559 0.94371 0.97919 1.21173 1.00660 1.01540 0.91431 1.17744 0.93525 0.99762 0.85267 1.91507 1.88914 1.79651 1.51213 1.17615 0.89757 1.03655 0.84846 1.91510 1.74610 1.94999 1.50086 1.21065 1.01764 1.00762 0.91170 1.62312 1.57727 1.03303 1.02573 1.22443 0.97508 0.90974 1.01948 1.22176 0.98583 0.96574 0.88306 1.19570 0.95926 0.96373 0.92612 1.21072 1.31138 1.12357 0.91518 0.91152 1.24996 0.96103 0.96644 0.95604 1.69913 1.45073 1.39452 0.99810 0.86751 0.81282 0.83840 0.77222 1.20230 1.21529 1.19002 0.91845 0.92079 0.91364 0.82750 0.83796 0.83615 0.92373 0.90708 0.95337 0.91397 0.95073 0.96561 0.96162 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 7.64 37.16 0.28 -1.77 16 2 C 0.12 1.38 2.72 -68.86 -0.19 1.20 16 3 H 0.10 1.18 7.92 -51.93 -0.41 0.77 16 4 C -0.05 -0.55 4.56 -104.62 -0.48 -1.03 16 5 C -0.07 -0.79 8.60 -39.58 -0.34 -1.13 16 6 C -0.13 -1.32 10.02 -39.53 -0.40 -1.72 16 7 C 0.06 0.66 7.31 -39.37 -0.29 0.38 16 8 F -0.13 -1.67 17.18 2.25 0.04 -1.63 16 9 C 0.06 0.72 7.31 -39.37 -0.29 0.43 16 10 F -0.13 -1.66 17.18 2.25 0.04 -1.62 16 11 C -0.13 -1.35 9.11 -39.53 -0.36 -1.71 16 12 N -0.54 -7.94 3.78 -236.28 -0.89 -8.84 16 13 C 0.02 0.27 8.21 60.07 0.49 0.77 16 14 C 0.07 1.28 4.48 -3.83 -0.02 1.27 16 15 C -0.01 -0.16 3.96 -27.88 -0.11 -0.27 16 16 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 20 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 24 H 0.06 0.70 6.46 -51.92 -0.34 0.36 16 25 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 26 H 0.07 0.82 6.93 -51.93 -0.36 0.46 16 27 H 0.15 1.74 7.52 -52.48 -0.39 1.34 16 28 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.15 1.30 6.08 -52.49 -0.32 0.98 16 30 H 0.06 0.73 6.68 -51.93 -0.35 0.38 16 31 H 0.07 1.17 6.58 -51.93 -0.34 0.82 16 32 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 33 H 0.07 1.24 7.92 -51.93 -0.41 0.83 16 34 H 0.03 0.58 7.06 -51.93 -0.37 0.21 16 35 H 0.02 0.37 5.66 -51.93 -0.29 0.08 16 36 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -29.48 303.22 -6.92 -36.40 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.66 Total: -2.40 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.12 Total: -16.49 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.12 Total: -35.49 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.08 Total: -3.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.48 -6.92 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078486644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.419 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds