Wall clock time and date at job start Mon Mar 30 2020 01:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47576 * 2 1 4 4 C 1.50706 * 109.47236 * 239.99942 * 2 1 3 5 5 C 1.38251 * 119.96837 * 206.18342 * 4 2 1 6 6 C 1.38216 * 120.07205 * 179.72538 * 5 4 2 7 7 C 1.38407 * 119.99620 * 0.54826 * 6 5 4 8 8 F 1.35100 * 120.03201 * 179.74348 * 7 6 5 9 9 C 1.38650 * 119.93322 * 359.73237 * 7 6 5 10 10 F 1.35100 * 120.03914 * 180.02562 * 9 7 6 11 11 C 1.38221 * 119.96163 * 26.46002 * 4 2 1 12 12 N 1.46904 * 109.47455 * 120.00009 * 2 1 3 13 13 C 1.46903 * 110.99581 * 53.46742 * 12 2 1 14 14 C 1.46892 * 110.99969 * 289.51542 * 12 2 1 15 15 C 1.53000 * 109.47045 * 189.99648 * 14 12 2 16 16 C 1.50705 * 109.46937 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00170 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99837 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00011 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00242 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47486 * 89.99541 * 20 18 16 22 22 H 1.48496 * 109.47284 * 210.00107 * 20 18 16 23 23 H 1.48510 * 109.46812 * 329.99698 * 20 18 16 24 24 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47500 * 59.99965 * 1 2 3 26 26 H 1.09002 * 109.46967 * 299.99990 * 1 2 3 27 27 H 1.08006 * 119.96429 * 0.02562 * 5 4 2 28 28 H 1.07998 * 120.00153 * 180.28154 * 6 5 4 29 29 H 1.07995 * 119.99910 * 0.02562 * 11 4 2 30 30 H 1.09006 * 109.46960 * 53.82700 * 13 12 2 31 31 H 1.09006 * 109.47039 * 173.82583 * 13 12 2 32 32 H 1.08993 * 109.47338 * 293.82923 * 13 12 2 33 33 H 1.08996 * 109.47656 * 310.00053 * 14 12 2 34 34 H 1.09002 * 109.46947 * 69.99999 * 14 12 2 35 35 H 1.09004 * 109.47171 * 300.00033 * 15 14 12 36 36 H 1.09002 * 109.46961 * 60.00360 * 15 14 12 37 37 H 0.96999 * 120.00080 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 3.2759 -1.3145 -1.2198 6 6 3.7364 -1.9715 -2.3453 7 6 2.9571 -2.0154 -3.4883 8 9 3.4087 -2.6530 -4.5905 9 6 1.7124 -1.4047 -3.5009 10 9 0.9498 -1.4466 -4.6153 11 6 1.2517 -0.7525 -2.3704 12 7 2.0197 -0.6925 1.1994 13 6 1.4255 -2.0311 1.3139 14 6 1.7633 0.1024 2.4078 15 6 2.4993 -0.5223 3.5948 16 6 2.2368 0.2937 4.8344 17 1 1.6075 1.1698 4.7810 18 6 2.7990 -0.0790 6.0369 19 7 2.5703 0.6332 7.1185 20 14 3.8868 -1.5948 6.1295 21 1 5.2975 -1.2082 5.8735 22 1 3.7770 -2.2011 7.4806 23 1 3.4504 -2.5804 5.1078 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 3.8861 -1.2771 -0.3295 28 1 4.7060 -2.4469 -2.3342 29 1 0.2826 -0.2760 -2.3790 30 1 1.5962 -2.5846 0.3905 31 1 1.8858 -2.5629 2.1467 32 1 0.3537 -1.9391 1.4894 33 1 2.1193 1.1212 2.2549 34 1 0.6927 0.1184 2.6117 35 1 2.1433 -1.5411 3.7478 36 1 3.5700 -0.5382 3.3909 37 1 2.9655 0.3708 7.9646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078486644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:59 Heat of formation + Delta-G solvation = -79.343590 kcal Electronic energy + Delta-G solvation = -20271.934401 eV Core-core repulsion = 16877.558036 eV Total energy + Delta-G solvation = -3394.376365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.49251 -49.57734 -40.82440 -38.50083 -35.31525 -33.62196 -31.96371 -31.07269 -29.69929 -27.76170 -26.23597 -24.27707 -23.79249 -22.04300 -20.81380 -19.02719 -18.94171 -18.07513 -17.83187 -17.35275 -16.72354 -16.32622 -16.04000 -16.00491 -15.85655 -15.40930 -15.05739 -14.83456 -14.59384 -14.52640 -13.85982 -13.54283 -13.50520 -13.16501 -12.90169 -12.82556 -12.55195 -12.50279 -12.24447 -11.91965 -11.83389 -11.66878 -11.44963 -11.29405 -10.71994 -10.04219 -9.59408 -9.18586 -8.26474 -6.30149 -0.09254 0.04408 1.40160 1.41032 1.53107 2.37581 2.39421 2.77161 2.99039 3.09987 3.37920 3.54348 3.69545 4.04469 4.15684 4.18520 4.30665 4.42283 4.46019 4.64347 4.69645 4.75264 4.76571 4.88999 4.92159 4.98553 5.07361 5.11973 5.18515 5.27114 5.34506 5.48489 5.55001 5.67593 5.78133 6.13930 6.25111 6.34885 6.78668 7.34810 8.90238 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034195 B = 0.003934 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.634433 B = 7116.509428 C = 7686.021742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 H 0.102 0.898 4 C -0.051 4.051 5 C -0.074 4.074 6 C -0.120 4.120 7 C 0.046 3.954 8 F -0.142 7.142 9 C 0.050 3.950 10 F -0.141 7.141 11 C -0.119 4.119 12 N -0.536 5.536 13 C 0.021 3.979 14 C 0.084 3.916 15 C -0.001 4.001 16 C -0.530 4.530 17 H 0.032 0.968 18 C 0.005 3.995 19 N -0.953 5.953 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.245 1.245 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.153 0.847 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.022 0.978 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 -5.900 -21.456 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.009 3.991 3 H 0.120 0.880 4 C -0.052 4.052 5 C -0.092 4.092 6 C -0.139 4.139 7 C 0.026 3.974 8 F -0.120 7.120 9 C 0.030 3.970 10 F -0.119 7.119 11 C -0.138 4.138 12 N -0.259 5.259 13 C -0.127 4.127 14 C -0.044 4.044 15 C -0.039 4.039 16 C -0.569 4.569 17 H 0.051 0.949 18 C -0.191 4.191 19 N -0.594 5.594 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.169 1.169 24 H 0.083 0.917 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.171 0.829 28 H 0.182 0.818 29 H 0.180 0.820 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.124 -5.971 -21.414 22.231 hybrid contribution -0.617 -0.298 0.288 0.743 sum -0.741 -6.270 -21.126 22.049 Atomic orbital electron populations 1.22515 0.95741 1.02979 1.03138 1.20617 0.93774 0.97760 0.86985 0.88009 1.19751 0.94129 0.97403 0.93931 1.21233 0.95476 0.94436 0.98068 1.21324 1.01198 1.00847 0.90509 1.17955 0.93854 1.00074 0.85498 1.91489 1.89015 1.79860 1.51665 1.17781 0.89916 1.04267 0.85015 1.91492 1.74809 1.95113 1.50512 1.21136 1.02204 1.00107 0.90368 1.62184 1.58365 1.03374 1.02008 1.22438 0.97401 0.90461 1.02381 1.21822 0.97436 0.96517 0.88579 1.19453 0.96482 0.95807 0.92178 1.21452 1.29967 1.11674 0.93779 0.94919 1.25969 0.97839 1.00181 0.95138 1.70069 1.46897 1.41788 1.00631 0.85647 0.79338 0.79900 0.77663 1.19246 1.21405 1.16869 0.91700 0.89732 0.92762 0.82891 0.81772 0.81959 0.90406 0.92169 0.95146 0.91734 0.95757 0.96216 0.95964 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 7.64 71.98 0.55 -3.05 16 2 C 0.12 2.54 2.72 44.17 0.12 2.66 16 3 H 0.10 2.20 7.92 -2.39 -0.02 2.18 16 4 C -0.05 -1.00 4.56 -19.86 -0.09 -1.09 16 5 C -0.07 -1.41 8.60 22.27 0.19 -1.22 16 6 C -0.12 -2.15 10.02 22.30 0.22 -1.92 16 7 C 0.05 0.98 7.31 22.41 0.16 1.14 16 8 F -0.14 -3.30 17.18 44.97 0.77 -2.52 16 9 C 0.05 1.07 7.31 22.41 0.16 1.23 16 10 F -0.14 -3.27 17.18 44.97 0.77 -2.50 16 11 C -0.12 -2.18 9.11 22.31 0.20 -1.98 16 12 N -0.54 -14.85 3.78 -901.47 -3.41 -18.26 16 13 C 0.02 0.55 8.21 127.69 1.05 1.60 16 14 C 0.08 3.01 4.48 86.30 0.39 3.39 16 15 C 0.00 -0.06 3.96 29.85 0.12 0.05 16 16 C -0.53 -29.71 9.66 25.60 0.25 -29.47 16 17 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 18 C 0.01 0.31 5.47 84.65 0.46 0.77 16 19 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 20 Si 0.95 43.52 27.47 68.60 1.88 45.40 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.25 -10.34 6.54 99.48 0.65 -9.68 16 24 H 0.06 1.25 6.46 -2.38 -0.02 1.24 16 25 H 0.08 1.24 6.54 -2.39 -0.02 1.23 16 26 H 0.05 1.22 6.93 -2.39 -0.02 1.20 16 27 H 0.15 3.03 7.52 -2.91 -0.02 3.01 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.16 2.36 6.08 -2.91 -0.02 2.35 16 30 H 0.08 1.72 6.68 -2.38 -0.02 1.70 16 31 H 0.06 1.74 6.58 -2.38 -0.02 1.73 16 32 H 0.03 0.78 6.58 -2.39 -0.02 0.76 16 33 H 0.06 2.34 7.92 -2.39 -0.02 2.32 16 34 H 0.02 0.90 7.06 -2.39 -0.02 0.88 16 35 H 0.02 0.86 5.66 -2.39 -0.01 0.85 16 36 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 37 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -63.66 303.22 5.13 -58.52 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 1.03 Total: 6.08 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.79 Total: -27.88 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.11 Total: -77.11 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.55 Total: -5.02 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.88 Total: 45.40 kcal Total: -63.66 5.13 -58.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078486644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.820 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds