Wall clock time and date at job start Mon Mar 30 2020 00:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 N 1.46504 * 109.47215 * 125.00387 * 3 2 1 5 5 C 1.34773 * 119.99718 * 180.02562 * 4 3 2 6 6 S 1.71199 * 120.00421 * 354.91383 * 5 4 3 7 7 N 1.34784 * 119.99793 * 174.91324 * 5 4 3 8 8 C 1.47081 * 120.88093 * 184.75668 * 7 5 4 9 9 C 1.53689 * 108.27385 * 128.75487 * 8 7 5 10 10 N 1.46901 * 109.25733 * 54.08316 * 9 8 7 11 11 C 1.46907 * 110.99978 * 172.60269 * 10 9 8 12 12 C 1.50695 * 109.47431 * 294.30486 * 11 10 9 13 13 H 1.08001 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99970 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00017 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99785 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47099 * 60.00134 * 16 14 12 18 18 H 1.48500 * 109.46802 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47061 * 300.00164 * 16 14 12 20 20 C 1.46901 * 111.26801 * 296.75470 * 10 9 8 21 21 C 1.47075 * 120.88025 * 5.03816 * 7 5 4 22 22 H 1.08004 * 120.00025 * 179.97438 * 1 2 3 23 23 H 1.07997 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99909 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47295 * 245.00259 * 3 2 1 26 26 H 1.09000 * 109.46713 * 4.99873 * 3 2 1 27 27 H 0.97001 * 119.99992 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.62579 * 248.52856 * 8 7 5 29 29 H 1.09006 * 109.62742 * 9.10458 * 8 7 5 30 30 H 1.09000 * 109.65165 * 294.08001 * 9 8 7 31 31 H 1.09003 * 109.42462 * 173.94906 * 9 8 7 32 32 H 1.08998 * 109.46750 * 54.30797 * 11 10 9 33 33 H 1.09003 * 109.46747 * 174.29983 * 11 10 9 34 34 H 0.96998 * 120.00271 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.48989 * 303.14159 * 20 10 9 36 36 H 1.08998 * 109.48935 * 183.06491 * 20 10 9 37 37 H 1.09005 * 109.62937 * 350.89531 * 21 7 5 38 38 H 1.08999 * 109.63355 * 111.47402 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3333 6 16 3.7833 3.6895 0.1972 7 7 4.5590 2.4779 2.4299 8 6 5.3434 3.6870 2.7233 9 6 5.0523 4.1107 4.1716 10 7 5.3039 2.9749 5.0686 11 6 5.2076 3.3843 6.4762 12 6 6.3161 4.3543 6.7943 13 1 7.0214 4.6387 6.0274 14 6 6.4292 4.8796 8.0640 15 7 5.5694 4.5345 8.9974 16 14 7.8037 6.0816 8.4585 17 1 7.6820 7.2766 7.5854 18 1 7.7062 6.4954 9.8813 19 1 9.1159 5.4277 8.2225 20 6 4.3943 1.8577 4.7817 21 6 4.6538 1.3439 3.3616 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 2.6212 1.4026 -0.9314 26 1 1.3585 2.1316 0.0895 27 1 3.0446 0.5746 1.7355 28 1 6.4056 3.4712 2.6080 29 1 5.0532 4.4862 2.0411 30 1 4.0111 4.4207 4.2606 31 1 5.7038 4.9409 4.4444 32 1 4.2442 3.8637 6.6499 33 1 5.2975 2.5069 7.1167 34 1 5.6492 4.9038 9.8908 35 1 3.3623 2.1990 4.8623 36 1 4.5688 1.0539 5.4969 37 1 3.9074 0.5931 3.1018 38 1 5.6509 0.9071 3.3067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078527070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:20 Heat of formation + Delta-G solvation = 54.095700 kcal Electronic energy + Delta-G solvation = -18418.779947 eV Core-core repulsion = 15616.323082 eV Total energy + Delta-G solvation = -2802.456865 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.94301 -37.63649 -35.46707 -33.41796 -32.47131 -31.15395 -28.84196 -26.61043 -25.64285 -23.79101 -22.91194 -21.57525 -20.74156 -19.64123 -18.10191 -17.33019 -16.43295 -15.95878 -15.23712 -14.97457 -14.83817 -14.55119 -14.48296 -13.89373 -13.81687 -13.61787 -13.19028 -12.46908 -12.16071 -11.73462 -11.58691 -11.38749 -11.32572 -11.14594 -10.88870 -10.78755 -10.67093 -10.59838 -10.04846 -9.94237 -9.38182 -8.86729 -8.52935 -7.71279 -7.47896 -7.31553 -6.12276 -4.14779 1.48129 1.58969 2.06925 2.74030 3.24417 3.29457 3.33688 3.36445 4.30172 4.35996 4.52386 4.66658 4.83792 5.05609 5.11878 5.22325 5.24770 5.33894 5.42483 5.48264 5.60333 5.70542 5.91558 5.93200 5.97124 6.09915 6.21998 6.35385 6.43996 6.46539 6.83021 7.08823 7.15645 7.22977 7.64332 7.87292 8.00263 8.36099 8.91878 9.50404 10.98504 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.003911 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.199535 B = 7157.997652 C = 7690.068699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.155 3.845 4 N -0.691 5.691 5 C 0.568 3.432 6 S -0.668 6.668 7 N -0.558 5.558 8 C 0.107 3.893 9 C 0.052 3.948 10 N -0.536 5.536 11 C 0.195 3.805 12 C -0.513 4.513 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.275 1.275 20 C 0.042 3.958 21 C 0.100 3.900 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.396 0.604 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.028 0.972 31 H 0.105 0.895 32 H -0.008 1.008 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 -11.020 -13.508 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.032 3.968 4 N -0.324 5.324 5 C 0.207 3.793 6 S -0.541 6.541 7 N -0.266 5.266 8 C -0.015 4.015 9 C -0.078 4.078 10 N -0.261 5.261 11 C 0.070 3.930 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.088 4.088 21 C -0.025 4.025 22 H 0.123 0.877 23 H 0.121 0.879 24 H 0.133 0.867 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.235 0.765 28 H 0.102 0.898 29 H 0.140 0.860 30 H 0.047 0.953 31 H 0.123 0.877 32 H 0.010 0.990 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.771 -10.332 -14.094 18.742 hybrid contribution -0.149 -0.315 1.456 1.497 sum -6.920 -10.648 -12.638 17.916 Atomic orbital electron populations 1.24021 0.95704 1.02643 0.97245 1.23024 0.96357 0.97999 1.02831 1.20713 0.91230 0.95829 0.89078 1.45073 1.39008 1.17299 1.31054 1.22180 0.80819 0.89274 0.87009 1.93331 1.84950 1.33603 1.42167 1.47535 1.41773 1.17804 1.19510 1.22667 0.95017 0.85918 0.97897 1.22480 1.00124 0.95262 0.89888 1.62154 1.49556 1.06673 1.07707 1.19730 0.96287 0.96114 0.80853 1.21077 1.12728 1.25252 0.96085 0.91722 1.24985 0.96388 0.96866 0.96208 1.69934 1.36269 1.44311 1.03188 0.86534 0.82258 0.81272 0.77231 1.20088 1.21337 1.20094 1.22358 0.95359 0.97005 0.94074 1.22180 1.02749 0.87690 0.89901 0.87742 0.87873 0.86736 0.88745 0.89533 0.76491 0.89827 0.86017 0.95330 0.87705 0.98970 0.95015 0.92736 0.95251 0.89476 0.90930 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 14.32 29.02 0.42 -0.54 16 2 C -0.18 -1.23 9.63 -36.02 -0.35 -1.58 16 3 C 0.15 1.45 5.58 -5.19 -0.03 1.42 16 4 N -0.69 -7.24 5.46 -63.21 -0.35 -7.59 16 5 C 0.57 8.04 7.72 -86.91 -0.67 7.37 16 6 S -0.67 -11.93 27.08 -107.50 -2.91 -14.84 16 7 N -0.56 -7.84 3.00 -174.21 -0.52 -8.36 16 8 C 0.11 1.69 6.49 -3.37 -0.02 1.66 16 9 C 0.05 0.95 5.47 -3.47 -0.02 0.93 16 10 N -0.54 -10.46 4.62 -235.47 -1.09 -11.54 16 11 C 0.19 4.76 4.72 -4.97 -0.02 4.74 16 12 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 16 13 H 0.06 1.70 7.13 -52.49 -0.37 1.32 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 21 C 0.10 1.20 6.59 -3.61 -0.02 1.17 16 22 H 0.10 0.48 8.06 -52.48 -0.42 0.06 16 23 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 24 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 25 H 0.09 0.98 7.89 -51.93 -0.41 0.57 16 26 H 0.09 0.91 7.74 -51.93 -0.40 0.51 16 27 H 0.40 3.24 5.96 -40.82 -0.24 3.00 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.12 2.02 6.08 -51.45 -0.31 1.71 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 2.07 6.67 -51.93 -0.35 1.72 16 32 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 33 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.27 7.99 -51.93 -0.41 0.85 16 37 H 0.07 0.62 5.63 -51.93 -0.29 0.33 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -31.58 320.33 -11.17 -42.75 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.71 Total: 0.60 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.13 Total: 3.28 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -1.22 Total: -52.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -11.93 SS G_CDS: -2.91 Total: -14.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.58 -11.17 -42.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.846 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds