Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 N 1.46504 * 109.47215 * 125.00387 * 3 2 1 5 5 C 1.34773 * 119.99718 * 180.02562 * 4 3 2 6 6 S 1.71199 * 120.00421 * 354.91383 * 5 4 3 7 7 N 1.34784 * 119.99793 * 174.91324 * 5 4 3 8 8 C 1.47081 * 120.88093 * 184.75668 * 7 5 4 9 9 C 1.53689 * 108.27385 * 128.75487 * 8 7 5 10 10 N 1.46901 * 109.25733 * 54.08316 * 9 8 7 11 11 C 1.46907 * 110.99978 * 172.60269 * 10 9 8 12 12 C 1.50695 * 109.47431 * 294.30486 * 11 10 9 13 13 H 1.08001 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99970 * 179.97438 * 12 11 10 15 15 N 1.31506 * 120.00017 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99785 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47099 * 60.00134 * 16 14 12 18 18 H 1.48500 * 109.46802 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47061 * 300.00164 * 16 14 12 20 20 C 1.46901 * 111.26801 * 296.75470 * 10 9 8 21 21 C 1.47075 * 120.88025 * 5.03816 * 7 5 4 22 22 H 1.08004 * 120.00025 * 179.97438 * 1 2 3 23 23 H 1.07997 * 120.00184 * 0.02562 * 1 2 3 24 24 H 1.08004 * 119.99909 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47295 * 245.00259 * 3 2 1 26 26 H 1.09000 * 109.46713 * 4.99873 * 3 2 1 27 27 H 0.97001 * 119.99992 * 359.97438 * 4 3 2 28 28 H 1.08998 * 109.62579 * 248.52856 * 8 7 5 29 29 H 1.09006 * 109.62742 * 9.10458 * 8 7 5 30 30 H 1.09000 * 109.65165 * 294.08001 * 9 8 7 31 31 H 1.09003 * 109.42462 * 173.94906 * 9 8 7 32 32 H 1.08998 * 109.46750 * 54.30797 * 11 10 9 33 33 H 1.09003 * 109.46747 * 174.29983 * 11 10 9 34 34 H 0.96998 * 120.00271 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.48989 * 303.14159 * 20 10 9 36 36 H 1.08998 * 109.48935 * 183.06491 * 20 10 9 37 37 H 1.09005 * 109.62937 * 350.89531 * 21 7 5 38 38 H 1.08999 * 109.63355 * 111.47402 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7783 2.4089 1.3333 6 16 3.7833 3.6895 0.1972 7 7 4.5590 2.4779 2.4299 8 6 5.3434 3.6870 2.7233 9 6 5.0523 4.1107 4.1716 10 7 5.3039 2.9749 5.0686 11 6 5.2076 3.3843 6.4762 12 6 6.3161 4.3543 6.7943 13 1 7.0214 4.6387 6.0274 14 6 6.4292 4.8796 8.0640 15 7 5.5694 4.5345 8.9974 16 14 7.8037 6.0816 8.4585 17 1 7.6820 7.2766 7.5854 18 1 7.7062 6.4954 9.8813 19 1 9.1159 5.4277 8.2225 20 6 4.3943 1.8577 4.7817 21 6 4.6538 1.3439 3.3616 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8499 -0.9353 -0.0004 25 1 2.6212 1.4026 -0.9314 26 1 1.3585 2.1316 0.0895 27 1 3.0446 0.5746 1.7355 28 1 6.4056 3.4712 2.6080 29 1 5.0532 4.4862 2.0411 30 1 4.0111 4.4207 4.2606 31 1 5.7038 4.9409 4.4444 32 1 4.2442 3.8637 6.6499 33 1 5.2975 2.5069 7.1167 34 1 5.6492 4.9038 9.8908 35 1 3.3623 2.1990 4.8623 36 1 4.5688 1.0539 5.4969 37 1 3.9074 0.5931 3.1018 38 1 5.6509 0.9071 3.3067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078527070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = 33.485773 kcal Electronic energy + Delta-G solvation = -18419.673661 eV Core-core repulsion = 15616.323082 eV Total energy + Delta-G solvation = -2803.350579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14093 -38.81684 -36.68600 -34.79633 -33.91446 -32.42592 -30.35979 -28.04634 -26.80101 -25.15980 -24.37276 -23.12767 -21.61368 -20.72395 -19.13241 -18.57649 -18.34798 -16.96040 -16.63209 -16.23884 -16.08637 -15.85941 -15.75358 -15.42292 -15.22655 -14.56536 -14.15557 -13.93722 -13.68630 -13.21223 -12.83736 -12.75547 -12.62802 -12.45752 -12.39434 -12.26552 -12.16438 -12.03100 -11.74608 -11.33360 -10.62964 -10.59001 -9.92527 -9.21165 -8.99168 -8.71223 -8.22154 -6.31794 0.32425 0.73697 1.11705 1.43200 1.45064 1.52765 1.62264 2.31525 2.39881 3.07810 3.14441 3.66023 3.74168 3.86246 3.97033 4.12028 4.12469 4.29569 4.39176 4.54472 4.62879 4.69891 4.72230 4.85094 4.90094 4.93595 5.01605 5.15166 5.22437 5.41531 5.59484 5.61831 5.65333 5.73933 6.00011 6.15242 6.27340 6.51249 6.83238 7.38260 8.88683 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.003911 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.199535 B = 7157.997652 C = 7690.068699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.188 4.188 3 C 0.155 3.845 4 N -0.666 5.666 5 C 0.584 3.416 6 S -0.743 6.743 7 N -0.560 5.560 8 C 0.123 3.877 9 C 0.059 3.941 10 N -0.538 5.538 11 C 0.209 3.791 12 C -0.525 4.525 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.038 3.962 21 C 0.109 3.891 22 H 0.125 0.875 23 H 0.099 0.901 24 H 0.134 0.866 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.413 0.587 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.012 0.988 31 H 0.086 0.914 32 H -0.040 1.040 33 H 0.014 0.986 34 H 0.264 0.736 35 H 0.022 0.978 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -12.963 -14.248 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.206 4.206 3 C 0.032 3.968 4 N -0.299 5.299 5 C 0.220 3.780 6 S -0.616 6.616 7 N -0.267 5.267 8 C 0.000 4.000 9 C -0.070 4.070 10 N -0.262 5.262 11 C 0.083 3.917 12 C -0.564 4.564 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.091 4.091 21 C -0.016 4.016 22 H 0.143 0.857 23 H 0.117 0.883 24 H 0.152 0.848 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.255 0.745 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.031 0.969 31 H 0.104 0.896 32 H -0.023 1.023 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.117 0.883 37 H 0.133 0.867 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.607 -12.331 -14.857 20.406 hybrid contribution -0.320 0.198 1.684 1.725 sum -6.926 -12.133 -13.173 19.202 Atomic orbital electron populations 1.24225 0.95600 1.03463 0.95541 1.22937 0.96407 0.97057 1.04213 1.20760 0.90701 0.97231 0.88072 1.45098 1.37282 1.16376 1.31137 1.21698 0.80955 0.89143 0.86184 1.93511 1.86757 1.36708 1.44643 1.47471 1.41515 1.17927 1.19813 1.22352 0.95700 0.86621 0.95341 1.22357 0.98630 0.94639 0.91395 1.62051 1.51237 1.07805 1.05139 1.19366 0.94005 0.94614 0.83670 1.21438 1.13129 1.25546 0.96252 0.91541 1.25858 0.98744 0.98632 0.96160 1.70056 1.38092 1.45688 1.03583 0.85489 0.79414 0.79090 0.76981 1.19396 1.21106 1.19153 1.22499 0.94030 0.95676 0.96888 1.22309 1.05186 0.87268 0.86821 0.85738 0.88316 0.84783 0.89745 0.90887 0.74524 0.88901 0.86903 0.96932 0.89595 1.02254 0.96830 0.92687 0.96000 0.88335 0.86673 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 14.32 67.79 0.97 -0.41 16 2 C -0.19 -1.95 9.63 25.66 0.25 -1.70 16 3 C 0.16 2.63 5.58 85.63 0.48 3.10 16 4 N -0.67 -12.13 5.46 -353.90 -1.93 -14.06 16 5 C 0.58 15.55 7.72 179.05 1.38 16.94 16 6 S -0.74 -26.62 27.08 -56.49 -1.53 -28.15 16 7 N -0.56 -14.59 3.00 -705.07 -2.12 -16.71 16 8 C 0.12 3.78 6.49 86.50 0.56 4.34 16 9 C 0.06 2.19 5.47 86.54 0.47 2.66 16 10 N -0.54 -20.88 4.62 -898.89 -4.15 -25.04 16 11 C 0.21 10.49 4.72 85.55 0.40 10.89 16 12 C -0.53 -28.45 8.41 25.60 0.22 -28.23 16 13 H 0.07 3.50 7.13 -2.91 -0.02 3.48 16 14 C 0.00 0.24 5.46 84.66 0.46 0.71 16 15 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 16 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 C 0.04 1.11 5.62 86.38 0.49 1.60 16 21 C 0.11 2.21 6.59 86.35 0.57 2.78 16 22 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 23 H 0.10 1.00 7.84 -2.91 -0.02 0.97 16 24 H 0.13 0.92 8.06 -2.91 -0.02 0.90 16 25 H 0.08 1.66 7.89 -2.39 -0.02 1.64 16 26 H 0.07 1.48 7.74 -2.39 -0.02 1.46 16 27 H 0.41 4.97 5.96 -92.71 -0.55 4.42 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.11 3.77 6.08 -2.69 -0.02 3.76 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 3.49 6.67 -2.39 -0.02 3.47 16 32 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 33 H 0.01 0.72 7.97 -2.39 -0.02 0.71 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 2.67 7.99 -2.39 -0.02 2.65 16 37 H 0.12 1.39 5.63 -2.38 -0.01 1.38 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -70.48 320.33 -0.68 -71.17 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.49 Total: 9.32 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 6.25 Total: 12.68 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -7.92 Total: -110.26 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -26.62 SS G_CDS: -1.53 Total: -28.15 kcal Total: -70.48 -0.68 -71.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078527070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.654 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds