Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.71344 * 2 1 4 4 C 1.53677 * 110.65759 * 236.93219 * 2 1 3 5 5 N 1.44592 * 111.14737 * 241.60479 * 4 2 1 6 6 C 1.28260 * 119.98208 * 359.88926 * 5 4 2 7 7 N 1.37576 * 125.06070 * 180.02562 * 6 5 4 8 8 C 1.47079 * 120.88205 * 179.79222 * 7 6 5 9 9 C 1.53695 * 108.27683 * 128.75660 * 8 7 6 10 10 N 1.46902 * 109.25573 * 54.08041 * 9 8 7 11 11 C 1.46893 * 110.99851 * 172.60686 * 10 9 8 12 12 C 1.50700 * 109.47202 * 59.38872 * 11 10 9 13 13 H 1.08000 * 120.00086 * 5.01095 * 12 11 10 14 14 C 1.37885 * 120.00148 * 185.01723 * 12 11 10 15 15 N 1.31512 * 119.99651 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47071 * 59.99701 * 16 14 12 18 18 H 1.48495 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47022 * 300.00204 * 16 14 12 20 20 C 1.46895 * 111.27010 * 296.75861 * 10 9 8 21 21 C 1.47081 * 120.87873 * 0.07598 * 7 6 5 22 22 S 1.76756 * 109.92755 * 0.10698 * 6 5 4 23 23 H 1.08992 * 109.47291 * 183.06988 * 1 2 3 24 24 H 1.09000 * 109.47050 * 303.07557 * 1 2 3 25 25 H 1.09008 * 109.47201 * 63.07077 * 1 2 3 26 26 H 1.09000 * 109.13112 * 2.01880 * 4 2 1 27 27 H 1.08996 * 109.13324 * 121.18913 * 4 2 1 28 28 H 1.08997 * 109.62884 * 248.52743 * 8 7 6 29 29 H 1.09003 * 109.62763 * 9.11022 * 8 7 6 30 30 H 1.08999 * 109.64676 * 294.08140 * 9 8 7 31 31 H 1.08995 * 109.42364 * 173.94633 * 9 8 7 32 32 H 1.09002 * 109.47255 * 179.38222 * 11 10 9 33 33 H 1.09004 * 109.47550 * 299.38718 * 11 10 9 34 34 H 0.97001 * 119.99332 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.49257 * 303.14129 * 20 10 9 36 36 H 1.09003 * 109.49244 * 183.06535 * 20 10 9 37 37 H 1.09000 * 109.62909 * 350.88862 * 21 7 6 38 38 H 1.08993 * 109.62761 * 111.28243 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9155 1.0196 0.0000 4 6 2.0721 -0.7846 -1.2051 5 7 2.8562 -1.9216 -0.7772 6 6 3.0184 -2.1542 0.4737 7 7 3.7416 -3.2018 0.9955 8 6 3.8715 -3.3791 2.4497 9 6 3.4877 -4.8268 2.7949 10 7 4.2934 -5.7484 1.9829 11 6 4.0855 -7.1402 2.4040 12 6 2.6284 -7.4966 2.2589 13 1 1.9415 -6.7910 1.8155 14 6 2.1722 -8.7235 2.6925 15 7 3.0088 -9.5828 3.2321 16 14 0.3660 -9.1649 2.5133 17 1 -0.0125 -9.1282 1.0777 18 1 0.1342 -10.5295 3.0511 19 1 -0.4595 -8.1880 3.2679 20 6 4.0103 -5.5837 0.5510 21 6 4.4105 -4.1705 0.1138 22 16 2.1729 -0.9305 1.4285 23 1 -0.3633 -1.0261 0.0550 24 1 -0.3633 0.5608 0.8611 25 1 -0.3634 0.4654 -0.9163 26 1 1.2352 -1.1347 -1.8092 27 1 2.6972 -0.1261 -1.8082 28 1 4.9014 -3.1883 2.7513 29 1 3.2025 -2.6891 2.9640 30 1 2.4302 -4.9858 2.5840 31 1 3.6798 -5.0105 3.8520 32 1 4.6853 -7.8023 1.7794 33 1 4.3852 -7.2534 3.4459 34 1 2.6879 -10.4460 3.5368 35 1 2.9456 -5.7322 0.3713 36 1 4.5814 -6.3163 -0.0194 37 1 4.0980 -4.0039 -0.9171 38 1 5.4911 -4.0520 0.1926 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079497781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = 35.528347 kcal Electronic energy + Delta-G solvation = -18795.144365 eV Core-core repulsion = 15991.882359 eV Total energy + Delta-G solvation = -2803.262006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.97756 -37.45924 -35.08629 -32.75966 -31.91399 -30.73950 -28.32412 -26.39304 -24.96842 -23.39678 -23.06883 -21.96742 -20.38396 -19.00673 -17.76205 -16.39003 -15.99918 -15.59067 -14.84608 -14.78232 -14.45556 -14.37529 -13.87999 -13.56432 -13.47586 -13.14397 -12.80209 -12.42725 -12.16656 -11.91240 -11.73845 -11.32564 -11.14349 -11.02462 -10.92711 -10.72546 -10.60630 -10.48406 -10.24317 -9.90534 -9.65189 -9.03466 -8.46789 -8.15596 -7.69475 -7.24459 -6.06811 -4.16143 1.25674 1.98461 2.34264 3.09715 3.26566 3.31614 3.34463 4.29465 4.37776 4.52336 4.83943 4.91097 5.00213 5.23418 5.30542 5.39621 5.49006 5.50225 5.58709 5.60907 5.62712 5.74874 5.86601 5.88062 5.98056 6.19296 6.42706 6.62329 6.72015 6.89533 7.19967 7.44948 7.46984 7.84911 7.95429 8.02524 8.17910 8.23456 8.93377 9.51170 10.98332 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.004951 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.642905 B = 5654.360564 C = 6170.669381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 H 0.111 0.889 4 C 0.076 3.924 5 N -0.625 5.625 6 C 0.452 3.548 7 N -0.575 5.575 8 C 0.128 3.872 9 C 0.052 3.948 10 N -0.540 5.540 11 C 0.188 3.812 12 C -0.552 4.552 13 H 0.055 0.945 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.048 3.952 21 C 0.134 3.866 22 S -0.214 6.214 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 17.756 -5.310 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.214 4.214 3 H 0.129 0.871 4 C -0.058 4.058 5 N -0.358 5.358 6 C 0.066 3.934 7 N -0.294 5.294 8 C 0.005 3.995 9 C -0.078 4.078 10 N -0.264 5.264 11 C 0.062 3.938 12 C -0.591 4.591 13 H 0.073 0.927 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.081 4.081 21 C 0.009 3.991 22 S 0.013 5.987 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.543 17.479 -4.699 18.107 hybrid contribution -2.140 -0.325 -0.833 2.320 sum -2.683 17.154 -5.532 18.222 Atomic orbital electron populations 1.21895 0.91433 1.03405 1.02525 1.24648 1.00278 1.02054 0.94412 0.87139 1.22484 0.96978 0.89807 0.96487 1.69815 1.29212 1.23251 1.13494 1.23447 0.90849 0.90030 0.89101 1.46260 1.51820 1.24582 1.06772 1.22087 1.01703 0.98165 0.77562 1.22321 0.97110 0.89782 0.98589 1.62496 1.53584 1.08531 1.01807 1.19768 0.95137 0.81981 0.96885 1.21694 0.95202 1.01106 1.41087 0.92691 1.24941 0.97507 0.96345 0.94796 1.69927 1.34585 1.07824 1.40486 0.86718 0.85603 0.77596 0.78493 1.20285 1.21120 1.20254 1.22294 1.00215 0.94364 0.91251 1.21889 0.96277 0.87217 0.93690 1.86570 1.63858 1.31360 1.16918 0.91401 0.91675 0.91096 0.89540 0.89800 0.90779 0.90547 0.93600 0.90107 0.95245 0.94541 0.92694 0.93983 0.90292 0.89373 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.08 37.16 0.34 -0.83 16 2 C -0.08 -0.86 3.99 -26.38 -0.11 -0.96 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.08 0.89 7.25 -4.71 -0.03 0.86 16 5 N -0.62 -9.73 9.89 -62.21 -0.62 -10.35 16 6 C 0.45 7.17 7.98 -89.83 -0.72 6.46 16 7 N -0.57 -9.37 3.08 -173.38 -0.53 -9.91 16 8 C 0.13 1.99 6.66 -3.37 -0.02 1.97 16 9 C 0.05 0.97 5.17 -3.46 -0.02 0.96 16 10 N -0.54 -11.15 4.83 -235.47 -1.14 -12.29 16 11 C 0.19 4.69 5.11 -4.98 -0.03 4.67 16 12 C -0.55 -14.92 7.75 -34.44 -0.27 -15.19 16 13 H 0.05 1.50 5.88 -52.49 -0.31 1.19 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 21 C 0.13 2.17 6.66 -3.60 -0.02 2.14 16 22 S -0.21 -2.92 21.07 -107.50 -2.27 -5.19 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.09 0.95 7.65 -51.93 -0.40 0.55 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.11 6.55 -51.93 -0.34 0.77 16 30 H 0.05 0.98 6.79 -51.93 -0.35 0.62 16 31 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 32 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.04 0.90 6.92 -51.93 -0.36 0.54 16 36 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 37 H 0.09 1.41 7.27 -51.93 -0.38 1.03 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -29.46 312.11 -11.04 -40.50 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.91 Total: -1.51 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.99 Total: 2.74 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -1.55 Total: -57.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.27 Total: -5.19 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.46 -11.04 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079497781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.025 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds