Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.71344 * 2 1 4 4 C 1.53677 * 110.65759 * 236.93219 * 2 1 3 5 5 N 1.44592 * 111.14737 * 241.60479 * 4 2 1 6 6 C 1.28260 * 119.98208 * 359.88926 * 5 4 2 7 7 N 1.37576 * 125.06070 * 180.02562 * 6 5 4 8 8 C 1.47079 * 120.88205 * 179.79222 * 7 6 5 9 9 C 1.53695 * 108.27683 * 128.75660 * 8 7 6 10 10 N 1.46902 * 109.25573 * 54.08041 * 9 8 7 11 11 C 1.46893 * 110.99851 * 172.60686 * 10 9 8 12 12 C 1.50700 * 109.47202 * 59.38872 * 11 10 9 13 13 H 1.08000 * 120.00086 * 5.01095 * 12 11 10 14 14 C 1.37885 * 120.00148 * 185.01723 * 12 11 10 15 15 N 1.31512 * 119.99651 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47071 * 59.99701 * 16 14 12 18 18 H 1.48495 * 109.47219 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47022 * 300.00204 * 16 14 12 20 20 C 1.46895 * 111.27010 * 296.75861 * 10 9 8 21 21 C 1.47081 * 120.87873 * 0.07598 * 7 6 5 22 22 S 1.76756 * 109.92755 * 0.10698 * 6 5 4 23 23 H 1.08992 * 109.47291 * 183.06988 * 1 2 3 24 24 H 1.09000 * 109.47050 * 303.07557 * 1 2 3 25 25 H 1.09008 * 109.47201 * 63.07077 * 1 2 3 26 26 H 1.09000 * 109.13112 * 2.01880 * 4 2 1 27 27 H 1.08996 * 109.13324 * 121.18913 * 4 2 1 28 28 H 1.08997 * 109.62884 * 248.52743 * 8 7 6 29 29 H 1.09003 * 109.62763 * 9.11022 * 8 7 6 30 30 H 1.08999 * 109.64676 * 294.08140 * 9 8 7 31 31 H 1.08995 * 109.42364 * 173.94633 * 9 8 7 32 32 H 1.09002 * 109.47255 * 179.38222 * 11 10 9 33 33 H 1.09004 * 109.47550 * 299.38718 * 11 10 9 34 34 H 0.97001 * 119.99332 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.49257 * 303.14129 * 20 10 9 36 36 H 1.09003 * 109.49244 * 183.06535 * 20 10 9 37 37 H 1.09000 * 109.62909 * 350.88862 * 21 7 6 38 38 H 1.08993 * 109.62761 * 111.28243 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9155 1.0196 0.0000 4 6 2.0721 -0.7846 -1.2051 5 7 2.8562 -1.9216 -0.7772 6 6 3.0184 -2.1542 0.4737 7 7 3.7416 -3.2018 0.9955 8 6 3.8715 -3.3791 2.4497 9 6 3.4877 -4.8268 2.7949 10 7 4.2934 -5.7484 1.9829 11 6 4.0855 -7.1402 2.4040 12 6 2.6284 -7.4966 2.2589 13 1 1.9415 -6.7910 1.8155 14 6 2.1722 -8.7235 2.6925 15 7 3.0088 -9.5828 3.2321 16 14 0.3660 -9.1649 2.5133 17 1 -0.0125 -9.1282 1.0777 18 1 0.1342 -10.5295 3.0511 19 1 -0.4595 -8.1880 3.2679 20 6 4.0103 -5.5837 0.5510 21 6 4.4105 -4.1705 0.1138 22 16 2.1729 -0.9305 1.4285 23 1 -0.3633 -1.0261 0.0550 24 1 -0.3633 0.5608 0.8611 25 1 -0.3634 0.4654 -0.9163 26 1 1.2352 -1.1347 -1.8092 27 1 2.6972 -0.1261 -1.8082 28 1 4.9014 -3.1883 2.7513 29 1 3.2025 -2.6891 2.9640 30 1 2.4302 -4.9858 2.5840 31 1 3.6798 -5.0105 3.8520 32 1 4.6853 -7.8023 1.7794 33 1 4.3852 -7.2534 3.4459 34 1 2.6879 -10.4460 3.5368 35 1 2.9456 -5.7322 0.3713 36 1 4.5814 -6.3163 -0.0194 37 1 4.0980 -4.0039 -0.9171 38 1 5.4911 -4.0520 0.1926 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079497781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = 16.118098 kcal Electronic energy + Delta-G solvation = -18795.986056 eV Core-core repulsion = 15991.882359 eV Total energy + Delta-G solvation = -2804.103697 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34942 -38.64972 -36.53228 -34.56581 -33.16905 -32.16353 -29.90255 -27.78200 -26.48327 -24.84899 -24.26900 -23.48147 -21.75422 -20.35321 -19.00210 -18.34425 -17.20548 -16.75871 -16.48405 -16.09201 -15.96451 -15.68761 -15.53218 -14.89393 -14.59658 -14.47370 -13.88985 -13.74154 -13.61907 -13.22480 -13.02524 -12.96224 -12.62425 -12.49185 -12.40764 -12.23050 -12.22171 -12.01065 -11.83458 -11.64084 -11.37899 -10.62735 -10.13450 -9.37230 -9.06420 -8.75625 -8.18361 -6.37356 0.22408 1.01562 1.18911 1.34430 1.34668 1.43268 1.91638 2.34493 3.06801 3.28559 3.41996 3.70863 3.79314 4.07825 4.12584 4.18501 4.31127 4.33489 4.48165 4.56582 4.62423 4.67226 4.77547 4.80119 4.86334 4.91762 5.03322 5.15412 5.18370 5.20942 5.30542 5.66753 5.71305 5.97796 6.13563 6.29818 6.42806 6.82004 6.91100 7.33918 8.83904 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.004951 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.642905 B = 5654.360564 C = 6170.669381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 H 0.136 0.864 4 C 0.069 3.931 5 N -0.644 5.644 6 C 0.436 3.564 7 N -0.586 5.586 8 C 0.142 3.858 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.200 3.800 12 C -0.558 4.558 13 H 0.048 0.952 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.951 3.049 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.272 1.272 20 C 0.053 3.947 21 C 0.148 3.852 22 S -0.234 6.234 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.008 0.992 33 H 0.014 0.986 34 H 0.266 0.734 35 H 0.013 0.987 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 19.937 -6.134 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.200 4.200 3 H 0.154 0.846 4 C -0.064 4.064 5 N -0.376 5.376 6 C 0.050 3.950 7 N -0.307 5.307 8 C 0.019 3.981 9 C -0.075 4.075 10 N -0.258 5.258 11 C 0.074 3.926 12 C -0.597 4.597 13 H 0.066 0.934 14 C -0.183 4.183 15 N -0.561 5.561 16 Si 0.776 3.224 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.197 1.197 20 C -0.076 4.076 21 C 0.023 3.977 22 S -0.007 6.007 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.464 19.697 -5.542 20.514 hybrid contribution -1.883 -0.923 -0.646 2.194 sum -3.346 18.774 -6.188 20.049 Atomic orbital electron populations 1.21897 0.90135 1.02632 1.04267 1.24819 1.01185 1.02309 0.91701 0.84645 1.22638 0.97336 0.89329 0.97090 1.69798 1.29355 1.24701 1.13794 1.23585 0.91169 0.90434 0.89800 1.46252 1.52496 1.25161 1.06759 1.21942 1.02877 0.95551 0.77721 1.22326 0.95136 0.91691 0.98344 1.62430 1.53869 1.06481 1.02992 1.19442 0.93794 0.84289 0.95097 1.21889 0.96040 1.01075 1.40670 0.93371 1.25718 1.01690 0.96319 0.94528 1.70033 1.36469 1.08252 1.41367 0.85719 0.80553 0.77578 0.78504 1.19933 1.20312 1.19724 1.22284 0.98399 0.96792 0.90142 1.21687 0.97060 0.85172 0.93737 1.86598 1.63811 1.31218 1.19079 0.93293 0.90945 0.88394 0.88710 0.87919 0.89125 0.89263 0.96416 0.90164 0.97340 0.96780 0.92483 0.96880 0.90288 0.89044 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.08 71.98 0.65 -1.24 16 2 C -0.07 -1.23 3.99 30.82 0.12 -1.11 16 3 H 0.14 1.78 8.14 -2.38 -0.02 1.76 16 4 C 0.07 1.43 7.25 86.96 0.63 2.06 16 5 N -0.64 -18.94 9.89 -350.71 -3.47 -22.40 16 6 C 0.44 13.25 7.98 180.07 1.44 14.69 16 7 N -0.59 -18.57 3.08 -702.45 -2.16 -20.74 16 8 C 0.14 4.29 6.66 86.50 0.58 4.87 16 9 C 0.05 2.09 5.17 86.54 0.45 2.54 16 10 N -0.53 -22.50 4.83 -898.90 -4.34 -26.84 16 11 C 0.20 10.38 5.11 85.56 0.44 10.82 16 12 C -0.56 -30.95 7.75 25.60 0.20 -30.75 16 13 H 0.05 2.70 5.88 -2.91 -0.02 2.68 16 14 C 0.02 0.98 5.46 84.66 0.46 1.44 16 15 N -0.92 -54.39 13.29 21.45 0.28 -54.11 16 16 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 C 0.05 2.07 5.24 86.39 0.45 2.52 16 21 C 0.15 4.69 6.66 86.35 0.58 5.27 16 22 S -0.23 -5.96 21.07 -56.49 -1.19 -7.15 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.09 1.82 7.65 -2.39 -0.02 1.80 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.50 6.55 -2.39 -0.02 2.48 16 30 H 0.02 0.77 6.79 -2.39 -0.02 0.75 16 31 H 0.08 3.03 8.11 -2.39 -0.02 3.01 16 32 H 0.01 0.47 8.07 -2.39 -0.02 0.45 16 33 H 0.01 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.01 0.57 6.92 -2.39 -0.02 0.56 16 36 H 0.08 3.00 8.05 -2.39 -0.02 2.99 16 37 H 0.09 2.85 7.27 -2.39 -0.02 2.83 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -63.86 312.11 -1.82 -65.68 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.04 Total: 8.17 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.99 Total: 11.12 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -9.69 Total: -124.09 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -1.19 Total: -7.15 kcal Total: -63.86 -1.82 -65.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079497781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.800 kcal (2) G-P(sol) polarization free energy of solvation -63.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds