Wall clock time and date at job start Mon Mar 30 2020 01:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.38315 * 119.99856 * 119.72129 * 12 2 1 15 15 N 1.31632 * 127.50153 * 180.27768 * 14 12 2 16 16 C 1.31295 * 116.79153 * 180.02562 * 15 14 12 17 17 C 1.50700 * 121.06454 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46717 * 60.00150 * 17 16 15 19 19 C 1.52996 * 109.47110 * 180.02562 * 17 16 15 20 20 C 1.52991 * 109.47167 * 300.00271 * 17 16 15 21 21 N 1.30130 * 117.87208 * 0.02562 * 16 15 14 22 22 S 1.69942 * 105.76426 * 359.72976 * 21 16 15 23 23 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 26 26 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 28 28 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 29 29 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 30 30 H 1.08998 * 109.47474 * 59.99876 * 18 17 16 31 31 H 1.09000 * 109.46838 * 180.02562 * 18 17 16 32 32 H 1.08994 * 109.47404 * 299.99960 * 18 17 16 33 33 H 1.08994 * 109.47566 * 60.00236 * 19 17 16 34 34 H 1.09001 * 109.47018 * 180.02562 * 19 17 16 35 35 H 1.09004 * 109.47276 * 300.00322 * 19 17 16 36 36 H 1.09002 * 109.47703 * 59.99961 * 20 17 16 37 37 H 1.09000 * 109.47137 * 179.97438 * 20 17 16 38 38 H 1.08997 * 109.47599 * 299.99558 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.8088 -0.0168 -2.1095 15 7 3.3200 -0.4872 -3.2276 16 6 4.0452 0.3423 -3.9417 17 6 4.6768 -0.0951 -5.2381 18 6 3.5846 -0.5406 -6.2126 19 6 5.4570 1.0727 -5.8448 20 6 5.6303 -1.2618 -4.9728 21 7 4.2020 1.5539 -3.4936 22 16 3.3336 1.6225 -2.0344 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7089 1.1614 3.4844 27 1 2.4182 -2.7377 -0.9758 28 1 0.6926 -2.3015 -0.9803 29 1 1.6190 -2.2841 -2.5002 30 1 2.9052 0.2906 -6.4016 31 1 4.0414 -0.8574 -7.1502 32 1 3.0291 -1.3727 -5.7802 33 1 6.2351 1.3896 -5.1505 34 1 5.9135 0.7564 -6.7828 35 1 4.7780 1.9042 -6.0338 36 1 5.0748 -2.0940 -4.5403 37 1 6.0867 -1.5785 -5.9106 38 1 6.4084 -0.9446 -4.2786 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087639809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:20 Heat of formation + Delta-G solvation = 40.996354 kcal Electronic energy + Delta-G solvation = -18876.095679 eV Core-core repulsion = 16073.070784 eV Total energy + Delta-G solvation = -2803.024895 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88053 -37.33140 -35.54793 -33.13969 -30.99154 -29.30691 -27.29446 -27.16191 -26.59281 -25.45560 -24.11052 -21.33576 -19.91117 -18.26462 -17.81695 -16.51737 -16.20141 -15.04090 -14.96436 -14.90184 -13.95126 -13.84246 -13.71434 -13.07373 -12.88251 -12.22647 -12.10575 -11.82743 -11.79720 -11.60147 -11.53370 -11.26377 -11.10688 -11.01134 -10.90701 -10.87128 -10.66211 -10.60801 -10.50163 -10.30928 -10.10744 -9.37311 -8.90312 -8.70143 -8.64793 -7.12135 -6.28749 -4.39944 1.48853 1.75493 2.51588 3.16997 3.24069 3.25440 3.34442 3.48630 4.23265 4.54151 4.98820 5.02238 5.08808 5.23092 5.67660 5.71005 5.71956 5.82296 5.91203 5.95044 6.00562 6.03225 6.19988 6.24016 6.28069 6.39851 6.40913 6.51285 6.54880 6.61918 6.70020 7.00315 7.31852 7.50908 7.68801 7.84573 8.02805 8.43429 8.65733 9.28364 10.75350 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.005032 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.352762 B = 5562.986577 C = 5645.208723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.065 0.935 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.904 3.096 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.525 5.525 13 C 0.103 3.897 14 C 0.357 3.643 15 N -0.605 5.605 16 C 0.313 3.687 17 C 0.022 3.978 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.133 4.133 21 N -0.527 5.527 22 S 0.155 5.845 23 H 0.017 0.983 24 H 0.038 0.962 25 H 0.101 0.899 26 H 0.268 0.732 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 -2.952 -11.741 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.237 5.237 13 C -0.042 4.042 14 C -0.021 4.021 15 N -0.344 5.344 16 C 0.023 3.977 17 C 0.016 3.984 18 C -0.190 4.190 19 C -0.188 4.188 20 C -0.191 4.191 21 N -0.361 5.361 22 S 0.291 5.709 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.403 -1.707 -11.294 11.918 hybrid contribution 0.114 -1.335 0.760 1.541 sum 3.517 -3.042 -10.534 11.515 Atomic orbital electron populations 1.22157 0.96958 1.00349 1.01491 1.19319 0.91960 0.92917 0.79344 0.92905 1.21236 1.32757 1.13720 0.89596 0.91676 1.24881 0.94529 0.94886 0.99102 1.69847 1.35638 1.22318 1.24387 0.86395 0.78750 0.79955 0.81805 1.20365 1.20902 1.19729 1.47023 1.45761 1.11288 1.19659 1.21599 1.00961 0.80784 1.00895 1.25277 0.91661 0.95034 0.90136 1.67236 1.23192 1.36023 1.07956 1.22802 0.92685 0.85522 0.96726 1.19117 0.95042 0.96179 0.88018 1.21792 0.97700 1.01796 0.97758 1.21737 1.00169 0.97051 0.99878 1.21795 0.98478 0.97393 1.01434 1.77387 1.28668 1.21483 1.08577 1.85080 1.48427 1.12046 1.25360 0.96435 0.94280 0.88049 0.92244 0.92904 0.90550 0.91677 0.92850 0.92074 0.91477 0.92075 0.92483 0.92110 0.91444 0.92090 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.95 37.16 0.33 -2.97 16 2 C 0.26 6.14 2.69 -69.08 -0.19 5.96 16 3 H 0.05 1.33 6.57 -51.93 -0.34 0.99 16 4 C -0.53 -13.44 8.37 -34.44 -0.29 -13.73 16 5 H 0.07 1.65 7.65 -52.48 -0.40 1.25 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.11 11.32 55.43 0.63 -22.48 16 8 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 12 N -0.52 -10.96 2.85 -176.75 -0.50 -11.47 16 13 C 0.10 1.82 9.85 59.85 0.59 2.41 16 14 C 0.36 7.43 7.95 -86.36 -0.69 6.74 16 15 N -0.61 -11.79 9.76 -14.58 -0.14 -11.93 16 16 C 0.31 5.70 6.07 -159.03 -0.97 4.74 16 17 C 0.02 0.31 0.95 -155.67 -0.15 0.16 16 18 C -0.13 -1.62 8.39 37.16 0.31 -1.31 16 19 C -0.13 -1.64 7.73 37.16 0.29 -1.36 16 20 C -0.13 -1.67 8.39 37.15 0.31 -1.36 16 21 N -0.53 -10.31 11.01 29.54 0.33 -9.99 16 22 S 0.15 3.17 22.28 -107.50 -2.40 0.78 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.80 6.66 -51.92 -0.35 0.45 16 25 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 29 H 0.06 1.07 7.73 -51.93 -0.40 0.66 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -26.80 321.49 -8.71 -35.52 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.91 Total: -1.17 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.54 Total: 0.96 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.31 Total: -55.86 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.40 Total: 0.78 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.80 -8.71 -35.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.516 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds