Wall clock time and date at job start Mon Mar 30 2020 01:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47151 * 89.99727 * 8 6 4 10 10 H 1.48501 * 109.47284 * 210.00039 * 8 6 4 11 11 H 1.48501 * 109.46883 * 330.00131 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.38315 * 119.99856 * 119.72129 * 12 2 1 15 15 N 1.31632 * 127.50153 * 180.27768 * 14 12 2 16 16 C 1.31295 * 116.79153 * 180.02562 * 15 14 12 17 17 C 1.50700 * 121.06454 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46717 * 60.00150 * 17 16 15 19 19 C 1.52996 * 109.47110 * 180.02562 * 17 16 15 20 20 C 1.52991 * 109.47167 * 300.00271 * 17 16 15 21 21 N 1.30130 * 117.87208 * 0.02562 * 16 15 14 22 22 S 1.69942 * 105.76426 * 359.72976 * 21 16 15 23 23 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 24 24 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 26 26 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 28 28 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 29 29 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 30 30 H 1.08998 * 109.47474 * 59.99876 * 18 17 16 31 31 H 1.09000 * 109.46838 * 180.02562 * 18 17 16 32 32 H 1.08994 * 109.47404 * 299.99960 * 18 17 16 33 33 H 1.08994 * 109.47566 * 60.00236 * 19 17 16 34 34 H 1.09001 * 109.47018 * 180.02562 * 19 17 16 35 35 H 1.09004 * 109.47276 * 300.00322 * 19 17 16 36 36 H 1.09002 * 109.47703 * 59.99961 * 20 17 16 37 37 H 1.09000 * 109.47137 * 179.97438 * 20 17 16 38 38 H 1.08997 * 109.47599 * 299.99558 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1124 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.8088 -0.0168 -2.1095 15 7 3.3200 -0.4872 -3.2276 16 6 4.0452 0.3423 -3.9417 17 6 4.6768 -0.0951 -5.2381 18 6 3.5846 -0.5406 -6.2126 19 6 5.4570 1.0727 -5.8448 20 6 5.6303 -1.2618 -4.9728 21 7 4.2020 1.5539 -3.4936 22 16 3.3336 1.6225 -2.0344 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7089 1.1614 3.4844 27 1 2.4182 -2.7377 -0.9758 28 1 0.6926 -2.3015 -0.9803 29 1 1.6190 -2.2841 -2.5002 30 1 2.9052 0.2906 -6.4016 31 1 4.0414 -0.8574 -7.1502 32 1 3.0291 -1.3727 -5.7802 33 1 6.2351 1.3896 -5.1505 34 1 5.9135 0.7564 -6.7828 35 1 4.7780 1.9042 -6.0338 36 1 5.0748 -2.0940 -4.5403 37 1 6.0867 -1.5785 -5.9106 38 1 6.4084 -0.9446 -4.2786 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087639809.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:20 Heat of formation + Delta-G solvation = 27.959468 kcal Electronic energy + Delta-G solvation = -18876.661001 eV Core-core repulsion = 16073.070784 eV Total energy + Delta-G solvation = -2803.590217 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33756 -38.92365 -36.82304 -34.95634 -32.59754 -31.02017 -28.60491 -28.13736 -27.82314 -27.36185 -25.58988 -22.93205 -21.46482 -19.77914 -19.23855 -18.40053 -17.80575 -16.73373 -16.50884 -16.17012 -15.53505 -15.24612 -14.78924 -14.63479 -14.39796 -13.60655 -13.40676 -13.18999 -13.07817 -12.99697 -12.90064 -12.83317 -12.62635 -12.55301 -12.43092 -12.31577 -12.12617 -12.01575 -11.92038 -11.75394 -11.67189 -11.18568 -10.62048 -10.46135 -10.28095 -8.76878 -8.20149 -6.38942 -0.08962 0.16282 0.98425 1.41893 1.44312 1.52748 1.83571 1.88719 2.39940 3.07248 3.18986 3.91832 4.04114 4.07840 4.29366 4.51444 4.57490 4.65224 4.78253 4.81016 4.82646 4.87479 4.90880 4.92721 4.97054 5.01983 5.04013 5.16664 5.22233 5.32191 5.41492 5.47890 5.55709 5.67170 5.89259 6.03768 6.27617 6.66085 6.91490 7.32506 8.81676 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.030615 B = 0.005032 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.352762 B = 5562.986577 C = 5645.208723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.029 0.971 4 C -0.546 4.546 5 H 0.059 0.941 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.267 1.267 12 N -0.531 5.531 13 C 0.104 3.896 14 C 0.349 3.651 15 N -0.601 5.601 16 C 0.309 3.691 17 C 0.016 3.984 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.127 4.127 21 N -0.533 5.533 22 S 0.121 5.879 23 H 0.027 0.973 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.269 0.731 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -4.338 -13.175 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.047 0.953 4 C -0.584 4.584 5 H 0.077 0.923 6 C -0.172 4.172 7 N -0.545 5.545 8 Si 0.786 3.214 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.191 1.191 12 N -0.244 5.244 13 C -0.040 4.040 14 C -0.030 4.030 15 N -0.340 5.340 16 C 0.019 3.981 17 C 0.011 3.989 18 C -0.185 4.185 19 C -0.183 4.183 20 C -0.186 4.186 21 N -0.366 5.366 22 S 0.256 5.744 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.034 -3.104 -12.751 13.730 hybrid contribution -0.038 -0.900 1.118 1.436 sum 3.996 -4.004 -11.633 12.935 Atomic orbital electron populations 1.21978 0.95989 1.00885 1.00918 1.19076 0.92601 0.91759 0.79797 0.95344 1.21429 1.32758 1.13625 0.90615 0.92274 1.25556 0.94692 0.95474 1.01501 1.69949 1.36379 1.23270 1.24940 0.85515 0.77971 0.79112 0.78827 1.20700 1.20381 1.19141 1.46943 1.46018 1.12254 1.19175 1.21725 1.01316 0.79027 1.01936 1.25449 0.91886 0.94969 0.90651 1.67328 1.23152 1.36015 1.07481 1.23723 0.91692 0.84894 0.97762 1.19475 0.95889 0.97308 0.86258 1.21771 0.97032 1.01035 0.98614 1.21716 0.99407 0.96136 1.01044 1.21777 0.97667 0.96152 1.02961 1.77493 1.28918 1.22293 1.07902 1.85149 1.49369 1.13027 1.26807 0.95344 0.93112 0.90172 0.92168 0.92874 0.89692 0.90228 0.93650 0.88599 0.92485 0.93412 0.88959 0.93200 0.92573 0.88540 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 8.95 71.98 0.64 -5.42 16 2 C 0.27 12.59 2.69 44.25 0.12 12.71 16 3 H 0.03 1.49 6.57 -2.39 -0.02 1.47 16 4 C -0.55 -27.51 8.37 25.60 0.21 -27.30 16 5 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 6 C 0.03 1.48 5.30 84.66 0.45 1.93 16 7 N -0.91 -47.80 11.32 21.45 0.24 -47.56 16 8 Si 0.96 40.69 29.54 68.60 2.03 42.71 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 12 N -0.53 -22.08 2.85 -713.11 -2.03 -24.12 16 13 C 0.10 3.57 9.85 127.77 1.26 4.83 16 14 C 0.35 14.54 7.95 178.86 1.42 15.96 16 15 N -0.60 -23.02 9.76 -200.05 -1.95 -24.97 16 16 C 0.31 11.02 6.07 139.39 0.85 11.86 16 17 C 0.02 0.42 0.95 -52.93 -0.05 0.37 16 18 C -0.13 -2.75 8.39 71.98 0.60 -2.14 16 19 C -0.13 -2.85 7.73 71.98 0.56 -2.30 16 20 C -0.13 -2.87 8.39 71.98 0.60 -2.27 16 21 N -0.53 -20.82 11.01 -60.46 -0.67 -21.49 16 22 S 0.12 5.06 22.28 -56.49 -1.26 3.80 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 2.04 6.66 -2.38 -0.02 2.03 16 25 H 0.08 3.88 6.07 -2.39 -0.01 3.86 16 26 H 0.27 13.49 8.31 -92.70 -0.77 12.72 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.75 6.43 -2.39 -0.02 2.73 16 29 H 0.08 2.48 7.73 -2.39 -0.02 2.46 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 36 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -57.14 321.49 4.06 -53.08 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.03 Total: 10.32 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.67 Total: 8.23 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.41 Total: -118.13 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.26 Total: 3.80 kcal Total: -57.14 4.06 -53.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087639809.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.035 kcal (2) G-P(sol) polarization free energy of solvation -57.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds