Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46945 * 2 1 4 4 C 1.50699 * 109.47298 * 119.99082 * 2 1 3 5 5 H 1.07999 * 119.99660 * 120.00397 * 4 2 1 6 6 C 1.37868 * 120.00331 * 300.00698 * 4 2 1 7 7 N 1.31519 * 120.00194 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00086 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46889 * 90.00104 * 8 6 4 10 10 H 1.48505 * 109.47228 * 209.99938 * 8 6 4 11 11 H 1.48497 * 109.46819 * 330.00281 * 8 6 4 12 12 N 1.46900 * 109.47383 * 240.00103 * 2 1 3 13 13 C 1.46899 * 110.99727 * 183.95348 * 12 2 1 14 14 C 1.46894 * 110.99957 * 59.99485 * 12 2 1 15 15 C 1.50707 * 109.46543 * 189.99962 * 14 12 2 16 16 C 1.33329 * 125.94805 * 90.00308 * 15 14 12 17 17 N 1.32117 * 114.57854 * 179.97438 * 16 15 14 18 18 C 1.29693 * 116.86852 * 0.02562 * 17 16 15 19 19 N 1.38612 * 124.95092 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99895 * 0.02715 * 19 18 17 21 21 C 1.46499 * 119.99834 * 180.02562 * 19 18 17 22 22 S 1.70969 * 110.09668 * 0.24236 * 18 17 16 23 23 H 1.08998 * 109.46965 * 60.00461 * 1 2 3 24 24 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47186 * 300.00210 * 1 2 3 26 26 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47225 * 296.03883 * 13 12 2 28 28 H 1.08997 * 109.47832 * 56.04439 * 13 12 2 29 29 H 1.09004 * 109.47237 * 176.04318 * 13 12 2 30 30 H 1.08997 * 109.47208 * 70.01068 * 14 12 2 31 31 H 1.08993 * 109.47581 * 310.00091 * 14 12 2 32 32 H 1.07997 * 122.71174 * 0.02562 * 16 15 14 33 33 H 1.09002 * 109.47391 * 359.97438 * 20 19 18 34 34 H 1.09001 * 109.46813 * 239.99920 * 20 19 18 35 35 H 1.09004 * 109.47041 * 120.00047 * 20 19 18 36 36 H 1.08994 * 109.47057 * 270.00052 * 21 19 18 37 37 H 1.09006 * 109.46711 * 30.00213 * 21 19 18 38 38 H 1.08998 * 109.46853 * 150.00007 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 1 2.6533 -1.5882 1.1315 6 6 1.6993 -0.2391 2.4827 7 7 2.1373 -0.8592 3.5566 8 14 0.6257 1.2800 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9769 1.9957 3.9070 11 1 0.8489 2.1773 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7944 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8581 -0.8913 -3.6158 16 6 1.0610 -1.8270 -4.1322 17 7 1.5578 -2.4525 -5.1845 18 6 2.7381 -2.0881 -5.5797 19 7 3.4161 -2.6301 -6.6604 20 6 2.7992 -3.6977 -7.4515 21 6 4.7496 -2.1353 -7.0115 22 16 3.3389 -0.8470 -4.5690 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9032 -0.5276 4.4376 27 1 3.9192 0.2044 -1.2300 28 1 3.8071 -1.2913 -0.2718 29 1 3.8166 -1.3721 -2.0498 30 1 2.0519 0.9345 -2.5281 31 1 0.4723 0.1323 -2.3564 32 1 0.0874 -2.0545 -3.7239 33 1 1.8161 -3.9313 -7.0427 34 1 3.4283 -4.5871 -7.4145 35 1 2.6945 -3.3695 -8.4857 36 1 4.6566 -1.3096 -7.7169 37 1 5.2571 -1.7887 -6.1112 38 1 5.3271 -2.9395 -7.4674 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = 78.118797 kcal Electronic energy + Delta-G solvation = -18503.304282 eV Core-core repulsion = 15701.889137 eV Total energy + Delta-G solvation = -2801.415145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53658 -37.48015 -36.44653 -32.87551 -30.90209 -29.65773 -28.54081 -27.27460 -25.57163 -24.39760 -23.37430 -22.36379 -19.69848 -19.09385 -18.05397 -16.75879 -16.17598 -15.69450 -15.22398 -14.86819 -14.51786 -14.22364 -13.98935 -13.39846 -13.10059 -12.94470 -12.85030 -12.75333 -12.42831 -12.22203 -12.05565 -11.87281 -11.31425 -10.93880 -10.71038 -10.62712 -10.38442 -10.12568 -9.89889 -9.49468 -9.39944 -9.01184 -8.90120 -8.55966 -7.51160 -7.32199 -6.06305 -4.05064 1.20026 1.29211 1.99915 2.80718 3.20788 3.27012 3.36375 3.38824 4.39876 4.57667 4.92193 5.01176 5.03415 5.07976 5.25502 5.31265 5.34176 5.37863 5.60140 5.65209 5.95412 6.08527 6.17352 6.27333 6.35673 6.40460 6.48254 6.58783 6.62521 6.79089 6.92884 6.97884 7.27569 7.58279 7.93329 8.06857 8.09924 8.65494 9.00335 9.55292 11.06389 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.004209 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.930029 B = 6650.829621 C = 6822.948815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.521 5.521 13 C 0.033 3.967 14 C 0.128 3.872 15 C -0.229 4.229 16 C 0.087 3.913 17 N -0.549 5.549 18 C 0.302 3.698 19 N -0.595 5.595 20 C 0.101 3.899 21 C 0.095 3.905 22 S 0.086 5.914 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.264 0.736 27 H 0.011 0.989 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.174 0.826 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -0.415 -21.227 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.074 3.926 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.003 4.003 15 C -0.351 4.351 16 C -0.063 4.063 17 N -0.274 5.274 18 C -0.068 4.068 19 N -0.317 5.317 20 C -0.044 4.044 21 C -0.048 4.048 22 S 0.335 5.665 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.190 0.810 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.503 -0.800 -21.403 21.702 hybrid contribution -1.072 1.316 0.558 1.787 sum 2.431 0.517 -20.845 20.993 Atomic orbital electron populations 1.22233 0.98491 1.01502 0.98249 1.19708 0.91510 0.92640 0.88699 0.98438 1.20976 1.31925 1.13591 0.87837 0.89860 1.24918 0.95825 0.96608 0.95784 1.69881 1.45747 1.40262 0.97871 0.86883 0.80814 0.83816 0.76818 1.20484 1.22518 1.19439 1.61993 1.10190 1.51740 1.00603 1.22341 0.87845 0.98947 1.02412 1.20470 1.01249 0.92162 0.86403 1.25375 0.96107 1.08319 1.05336 1.21223 1.01157 0.92476 0.91395 1.66347 1.10634 1.32158 1.18252 1.23510 0.92847 0.96594 0.93805 1.45590 1.17196 1.40081 1.28828 1.21650 0.99865 0.88472 0.94401 1.21733 0.81921 0.99935 1.01209 1.83806 1.21503 1.36846 1.24374 0.95134 0.91862 0.93977 0.92620 0.97083 0.89644 0.93329 0.94991 0.88829 0.80951 0.89248 0.92728 0.92844 0.92560 0.91263 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.47 37.16 0.31 -2.89 16 2 C 0.18 4.30 1.65 -68.87 -0.11 4.19 16 3 H 0.00 -0.05 7.20 -51.93 -0.37 -0.42 16 4 C -0.51 -14.09 8.46 -34.44 -0.29 -14.38 16 5 H 0.08 2.53 6.65 -52.49 -0.35 2.18 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 8 Si 0.89 21.86 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.52 -10.94 4.61 -237.74 -1.10 -12.04 16 13 C 0.03 0.67 9.03 60.06 0.54 1.21 16 14 C 0.13 2.23 5.31 -4.98 -0.03 2.21 16 15 C -0.23 -3.69 5.30 -36.02 -0.19 -3.88 16 16 C 0.09 1.38 11.24 -19.14 -0.22 1.17 16 17 N -0.55 -8.71 9.54 -15.21 -0.15 -8.86 16 18 C 0.30 4.28 7.75 -87.67 -0.68 3.60 16 19 N -0.60 -6.62 3.38 -191.88 -0.65 -7.27 16 20 C 0.10 0.91 10.76 59.85 0.64 1.56 16 21 C 0.10 0.73 10.46 59.85 0.63 1.36 16 22 S 0.09 1.20 20.29 -107.50 -2.18 -0.99 16 23 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 1.91 6.10 -51.93 -0.32 1.59 16 29 H 0.05 0.88 6.10 -51.93 -0.32 0.57 16 30 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.09 1.55 5.83 -51.93 -0.30 1.25 16 32 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 33 H 0.09 0.97 7.12 -51.93 -0.37 0.60 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.56 7.04 -51.93 -0.37 0.19 16 38 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 LS Contribution 309.29 15.07 4.66 4.66 Total: -1.00 -31.81 309.29 -7.71 -39.53 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.44 Total: -2.21 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 0.51 Total: -3.95 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.12 Total: -54.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.18 Total: -0.99 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.81 -7.71 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.646 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds