Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46945 * 2 1 4 4 C 1.50699 * 109.47298 * 119.99082 * 2 1 3 5 5 H 1.07999 * 119.99660 * 120.00397 * 4 2 1 6 6 C 1.37868 * 120.00331 * 300.00698 * 4 2 1 7 7 N 1.31519 * 120.00194 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00086 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46889 * 90.00104 * 8 6 4 10 10 H 1.48505 * 109.47228 * 209.99938 * 8 6 4 11 11 H 1.48497 * 109.46819 * 330.00281 * 8 6 4 12 12 N 1.46900 * 109.47383 * 240.00103 * 2 1 3 13 13 C 1.46899 * 110.99727 * 183.95348 * 12 2 1 14 14 C 1.46894 * 110.99957 * 59.99485 * 12 2 1 15 15 C 1.50707 * 109.46543 * 189.99962 * 14 12 2 16 16 C 1.33329 * 125.94805 * 90.00308 * 15 14 12 17 17 N 1.32117 * 114.57854 * 179.97438 * 16 15 14 18 18 C 1.29693 * 116.86852 * 0.02562 * 17 16 15 19 19 N 1.38612 * 124.95092 * 179.97438 * 18 17 16 20 20 C 1.46499 * 119.99895 * 0.02715 * 19 18 17 21 21 C 1.46499 * 119.99834 * 180.02562 * 19 18 17 22 22 S 1.70969 * 110.09668 * 0.24236 * 18 17 16 23 23 H 1.08998 * 109.46965 * 60.00461 * 1 2 3 24 24 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47186 * 300.00210 * 1 2 3 26 26 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47225 * 296.03883 * 13 12 2 28 28 H 1.08997 * 109.47832 * 56.04439 * 13 12 2 29 29 H 1.09004 * 109.47237 * 176.04318 * 13 12 2 30 30 H 1.08997 * 109.47208 * 70.01068 * 14 12 2 31 31 H 1.08993 * 109.47581 * 310.00091 * 14 12 2 32 32 H 1.07997 * 122.71174 * 0.02562 * 16 15 14 33 33 H 1.09002 * 109.47391 * 359.97438 * 20 19 18 34 34 H 1.09001 * 109.46813 * 239.99920 * 20 19 18 35 35 H 1.09004 * 109.47041 * 120.00047 * 20 19 18 36 36 H 1.08994 * 109.47057 * 270.00052 * 21 19 18 37 37 H 1.09006 * 109.46711 * 30.00213 * 21 19 18 38 38 H 1.08998 * 109.46853 * 150.00007 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 1 2.6533 -1.5882 1.1315 6 6 1.6993 -0.2391 2.4827 7 7 2.1373 -0.8592 3.5566 8 14 0.6257 1.2800 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9769 1.9957 3.9070 11 1 0.8489 2.1773 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7944 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8581 -0.8913 -3.6158 16 6 1.0610 -1.8270 -4.1322 17 7 1.5578 -2.4525 -5.1845 18 6 2.7381 -2.0881 -5.5797 19 7 3.4161 -2.6301 -6.6604 20 6 2.7992 -3.6977 -7.4515 21 6 4.7496 -2.1353 -7.0115 22 16 3.3389 -0.8470 -4.5690 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9032 -0.5276 4.4376 27 1 3.9192 0.2044 -1.2300 28 1 3.8071 -1.2913 -0.2718 29 1 3.8166 -1.3721 -2.0498 30 1 2.0519 0.9345 -2.5281 31 1 0.4723 0.1323 -2.3564 32 1 0.0874 -2.0545 -3.7239 33 1 1.8161 -3.9313 -7.0427 34 1 3.4283 -4.5871 -7.4145 35 1 2.6945 -3.3695 -8.4857 36 1 4.6566 -1.3096 -7.7169 37 1 5.2571 -1.7887 -6.1112 38 1 5.3271 -2.9395 -7.4674 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = 55.991906 kcal Electronic energy + Delta-G solvation = -18504.263776 eV Core-core repulsion = 15701.889137 eV Total energy + Delta-G solvation = -2802.374639 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64909 -39.00320 -37.47683 -34.85132 -32.58932 -31.16089 -29.23418 -28.54138 -27.10123 -26.09388 -24.70171 -23.53834 -21.41525 -20.25305 -19.21424 -18.73354 -17.43977 -16.82330 -16.60112 -16.07837 -15.83463 -15.70076 -15.41716 -14.84785 -14.51778 -14.41722 -14.24328 -13.67215 -13.52398 -13.46339 -13.35842 -12.95202 -12.81417 -12.64589 -12.54256 -12.25639 -12.03758 -11.82585 -11.42797 -11.08772 -10.81235 -10.70554 -10.51943 -10.02481 -9.01683 -8.46805 -8.26167 -6.29674 0.06771 0.21694 0.87016 1.32648 1.37251 1.47417 1.95398 2.05445 2.33764 3.07572 3.33935 3.71385 4.06755 4.22102 4.27032 4.41335 4.45431 4.46769 4.50168 4.59726 4.67824 4.71567 4.78687 4.81564 4.86456 4.93226 5.01639 5.07708 5.19093 5.23672 5.45500 5.66539 5.81408 6.01285 6.03137 6.33789 6.69135 6.77021 7.00098 7.35066 8.90172 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.042939 B = 0.004209 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.930029 B = 6650.829621 C = 6822.948815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H -0.007 1.007 4 C -0.507 4.507 5 H 0.041 0.959 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.264 1.264 10 H -0.300 1.300 11 H -0.249 1.249 12 N -0.534 5.534 13 C 0.042 3.958 14 C 0.134 3.866 15 C -0.258 4.258 16 C 0.088 3.912 17 N -0.576 5.576 18 C 0.301 3.699 19 N -0.594 5.594 20 C 0.097 3.903 21 C 0.086 3.914 22 S 0.108 5.892 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.016 0.984 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 0.628 -23.871 24.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.076 3.924 3 H 0.011 0.989 4 C -0.546 4.546 5 H 0.059 0.941 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.228 1.228 11 H -0.173 1.173 12 N -0.259 5.259 13 C -0.107 4.107 14 C 0.004 3.996 15 C -0.381 4.381 16 C -0.061 4.061 17 N -0.302 5.302 18 C -0.069 4.069 19 N -0.314 5.314 20 C -0.047 4.047 21 C -0.055 4.055 22 S 0.357 5.643 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.196 0.804 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.140 0.233 -24.114 24.319 hybrid contribution -0.806 0.841 1.202 1.674 sum 2.334 1.073 -22.912 23.056 Atomic orbital electron populations 1.22133 0.96509 1.01658 0.99768 1.19546 0.92988 0.91687 0.88128 0.98938 1.21226 1.30914 1.12362 0.90057 0.94100 1.25773 0.97400 0.99995 0.95295 1.70039 1.47863 1.42538 0.98549 0.85849 0.79364 0.79959 0.77181 1.18968 1.22791 1.17337 1.61918 1.10379 1.52332 1.01232 1.22201 0.87888 0.99120 1.01464 1.20418 1.01756 0.92309 0.85072 1.25221 0.97726 1.09295 1.05906 1.21404 1.01424 0.92034 0.91272 1.66404 1.11716 1.33181 1.18943 1.23877 0.92596 0.96203 0.94242 1.46083 1.17983 1.39720 1.27639 1.21799 0.99153 0.88767 0.95026 1.22023 0.80433 1.01557 1.01527 1.83611 1.20178 1.36653 1.23856 0.91297 0.92506 0.94620 0.92568 0.96501 0.92985 0.91523 0.94401 0.87808 0.80423 0.91289 0.90837 0.90523 0.91006 0.91704 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.47 71.98 0.61 -5.31 16 2 C 0.18 8.61 1.65 44.17 0.07 8.69 16 3 H -0.01 -0.32 7.20 -2.38 -0.02 -0.34 16 4 C -0.51 -29.05 8.46 25.60 0.22 -28.83 16 5 H 0.04 2.63 6.65 -2.91 -0.02 2.61 16 6 C 0.01 0.72 5.45 84.65 0.46 1.18 16 7 N -0.95 -59.64 13.96 21.44 0.30 -59.34 16 8 Si 0.95 44.75 24.37 68.60 1.67 46.43 16 9 H -0.26 -11.77 6.87 99.48 0.68 -11.09 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 11 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 12 N -0.53 -22.17 4.61 -906.06 -4.18 -26.35 16 13 C 0.04 1.70 9.03 127.69 1.15 2.85 16 14 C 0.13 4.46 5.31 85.56 0.45 4.91 16 15 C -0.26 -7.98 5.30 24.58 0.13 -7.85 16 16 C 0.09 2.73 11.24 83.54 0.94 3.67 16 17 N -0.58 -17.61 9.54 -202.02 -1.93 -19.53 16 18 C 0.30 8.00 7.75 179.32 1.39 9.39 16 19 N -0.59 -11.66 3.38 -760.98 -2.57 -14.24 16 20 C 0.10 1.50 10.76 127.77 1.37 2.87 16 21 C 0.09 1.05 10.46 127.77 1.34 2.38 16 22 S 0.11 2.83 20.29 -56.49 -1.15 1.68 16 23 H 0.07 2.30 6.20 -2.39 -0.01 2.28 16 24 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.04 1.51 3.27 -2.39 -0.01 1.50 16 26 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 2.43 6.10 -2.39 -0.01 2.42 16 29 H 0.07 2.41 6.10 -2.39 -0.01 2.40 16 30 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.10 3.17 5.83 -2.39 -0.01 3.16 16 32 H 0.18 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.07 1.39 7.12 -2.39 -0.02 1.37 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.87 7.04 -2.38 -0.02 0.85 16 38 H 0.11 0.73 8.07 -2.39 -0.02 0.72 16 Total: -1.00 -70.03 309.29 1.26 -68.77 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.97 Total: 8.62 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 8.14 Total: -6.05 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -8.38 Total: -119.45 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.43 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.15 Total: 1.68 kcal Total: -70.03 1.26 -68.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.766 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds