Wall clock time and date at job start Mon Mar 30 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47387 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99821 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00108 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46845 * 60.00484 * 12 10 8 14 14 H 1.48498 * 109.47028 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47227 * 300.00326 * 12 10 8 16 16 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 17 17 C 1.38235 * 119.98845 * 264.72206 * 16 2 1 18 18 C 1.38186 * 120.05107 * 179.76466 * 17 16 2 19 19 C 1.38492 * 120.02544 * 0.51700 * 18 17 16 20 20 F 1.35102 * 120.01187 * 179.76286 * 19 18 17 21 21 C 1.38402 * 119.97440 * 359.73915 * 19 18 17 22 22 C 1.38437 * 119.94639 * 0.02562 * 21 19 18 23 23 F 1.35108 * 120.00988 * 180.02562 * 22 21 19 24 24 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 25 25 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 27 27 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 31 31 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 32 32 H 1.09001 * 109.46514 * 300.00105 * 7 6 5 33 33 H 1.08998 * 109.46924 * 59.99625 * 7 6 5 34 34 H 0.97004 * 119.99990 * 179.97438 * 11 10 8 35 35 H 1.08001 * 119.97088 * 0.02562 * 17 16 2 36 36 H 1.08003 * 119.98798 * 180.25537 * 18 17 16 37 37 H 1.08002 * 120.02283 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6611 0.4200 4.7695 8 6 3.1665 -0.3243 5.9784 9 1 3.4169 -1.3720 5.9018 10 6 3.3103 0.3327 7.1820 11 7 3.0059 1.6087 7.2752 12 14 3.9361 -0.5901 8.6808 13 1 5.2921 -1.1269 8.4010 14 1 3.9992 0.3349 9.8409 15 1 3.0142 -1.7117 8.9922 16 6 2.0323 -0.7104 -1.2304 17 6 2.3664 -2.0502 -1.1667 18 6 2.8225 -2.7041 -2.2954 19 6 2.9555 -2.0150 -3.4893 20 9 3.4060 -2.6534 -4.5915 21 6 2.6263 -0.6722 -3.5530 22 6 2.1649 -0.0194 -2.4228 23 9 1.8427 1.2913 -2.4837 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.4495 -1.4979 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 1.9202 -1.3567 3.8030 31 1 3.5917 -0.9263 3.3683 32 1 3.3369 1.2441 4.5408 33 1 1.6655 0.8130 4.9752 34 1 3.1067 2.0708 8.1221 35 1 2.2669 -2.5874 -0.2350 36 1 3.0793 -3.7520 -2.2454 37 1 2.7294 -0.1341 -4.4838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131024286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:03 Heat of formation + Delta-G solvation = -84.986996 kcal Electronic energy + Delta-G solvation = -19577.227391 eV Core-core repulsion = 16182.606310 eV Total energy + Delta-G solvation = -3394.621081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.21423 -49.17434 -39.44804 -36.92533 -34.05388 -32.25949 -31.05110 -30.17304 -28.71394 -25.99140 -23.99046 -23.38992 -22.28282 -20.97235 -20.10545 -18.41091 -17.38392 -16.50483 -16.22220 -16.12991 -15.77000 -15.49197 -15.15610 -14.73141 -14.58649 -14.33282 -14.26768 -13.65781 -13.12665 -13.02672 -12.71802 -12.27724 -12.19335 -11.87602 -11.78074 -11.48330 -11.33775 -11.15380 -10.84035 -10.59917 -10.53136 -9.72501 -9.36794 -9.26711 -9.08432 -8.79664 -8.34568 -8.30002 -5.99606 -4.01931 0.73924 0.81764 3.15558 3.33707 3.38016 3.40513 3.65002 4.07223 4.22079 4.41443 4.46408 4.58265 4.65012 4.97935 5.02932 5.14148 5.36190 5.40567 5.57531 5.59538 5.70381 5.73128 5.80771 5.82157 5.90056 6.03543 6.07720 6.28466 6.55272 6.68456 6.72089 7.11047 7.22852 7.50059 7.67732 7.82559 8.00500 8.43422 9.05117 9.62121 11.11800 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.003072 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.142181 B = 9111.755556 C = 9620.179916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 H 0.092 0.908 4 N -0.683 5.683 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.107 4.107 17 C -0.039 4.039 18 C -0.164 4.164 19 C 0.119 3.881 20 F -0.136 7.136 21 C -0.194 4.194 22 C 0.129 3.871 23 F -0.131 7.131 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.339 0.661 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -5.928 -21.589 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.110 0.890 4 N -0.313 5.313 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.109 4.109 17 C -0.057 4.057 18 C -0.183 4.183 19 C 0.100 3.900 20 F -0.114 7.114 21 C -0.214 4.214 22 C 0.109 3.891 23 F -0.109 7.109 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.324 -5.658 -21.653 22.625 hybrid contribution -0.523 -0.137 0.796 0.962 sum -3.848 -5.795 -20.857 21.986 Atomic orbital electron populations 1.22462 0.95767 1.02517 1.02824 1.20328 0.92956 0.97704 0.88014 0.88993 1.60660 1.56474 1.10235 1.03974 1.22180 0.99399 0.95387 0.89928 1.21626 1.00111 0.98956 0.93791 1.19056 0.97040 0.94328 0.91098 1.21215 1.43691 0.96396 0.94557 0.92715 1.25028 0.95610 0.94879 0.98975 1.69953 1.48814 1.09009 1.25823 0.86655 0.79473 0.79586 0.82273 1.20204 1.21318 1.20267 1.20045 1.01956 0.95030 0.93848 1.20796 0.93979 0.92831 0.98084 1.21259 1.03898 1.01554 0.91567 1.17304 0.99112 0.90141 0.83469 1.91518 1.86584 1.81655 1.51660 1.20936 1.06388 0.94339 0.99699 1.17129 0.99895 0.78437 0.93674 1.91521 1.90140 1.32324 1.96913 0.92044 0.92097 0.91519 0.84231 0.91323 0.95348 0.93602 0.92495 0.96579 0.96811 0.92961 0.83278 0.84085 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.14 37.16 0.34 -1.47 16 2 C 0.12 1.41 2.57 -68.87 -0.18 1.23 16 3 H 0.09 1.18 7.45 -51.93 -0.39 0.79 16 4 N -0.68 -8.97 5.24 -107.95 -0.57 -9.54 16 5 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 6 C -0.11 -2.13 5.41 -26.73 -0.14 -2.28 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 12 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.11 -1.18 5.07 -104.55 -0.53 -1.71 16 17 C -0.04 -0.38 9.32 -39.60 -0.37 -0.75 16 18 C -0.16 -1.50 10.02 -39.51 -0.40 -1.89 16 19 C 0.12 1.18 7.30 -39.43 -0.29 0.90 16 20 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 21 C -0.19 -1.92 10.01 -39.45 -0.39 -2.32 16 22 C 0.13 1.41 7.24 -39.43 -0.29 1.13 16 23 F -0.13 -1.52 16.57 2.25 0.04 -1.49 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.07 0.72 7.45 -51.92 -0.39 0.33 16 27 H 0.34 3.98 7.90 -39.29 -0.31 3.67 16 28 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 29 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.15 1.33 6.88 -52.49 -0.36 0.97 16 36 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -29.84 320.51 -7.93 -37.78 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.17 Total: -1.28 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.82 Total: -19.30 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.17 Total: -35.81 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.84 -7.93 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131024286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.210 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds