Wall clock time and date at job start Mon Mar 30 2020 01:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 5 5 C 1.46905 * 110.99870 * 274.99736 * 4 2 1 6 6 C 1.52993 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47387 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00144 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99821 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00108 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99834 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46845 * 60.00484 * 12 10 8 14 14 H 1.48498 * 109.47028 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47227 * 300.00326 * 12 10 8 16 16 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 17 17 C 1.38235 * 119.98845 * 264.72206 * 16 2 1 18 18 C 1.38186 * 120.05107 * 179.76466 * 17 16 2 19 19 C 1.38492 * 120.02544 * 0.51700 * 18 17 16 20 20 F 1.35102 * 120.01187 * 179.76286 * 19 18 17 21 21 C 1.38402 * 119.97440 * 359.73915 * 19 18 17 22 22 C 1.38437 * 119.94639 * 0.02562 * 21 19 18 23 23 F 1.35108 * 120.00988 * 180.02562 * 22 21 19 24 24 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 25 25 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 27 27 H 1.00901 * 111.00067 * 38.94911 * 4 2 1 28 28 H 1.09001 * 109.46798 * 300.00327 * 5 4 2 29 29 H 1.08998 * 109.46961 * 60.00043 * 5 4 2 30 30 H 1.09001 * 109.47393 * 299.99719 * 6 5 4 31 31 H 1.08998 * 109.47408 * 60.00073 * 6 5 4 32 32 H 1.09001 * 109.46514 * 300.00105 * 7 6 5 33 33 H 1.08998 * 109.46924 * 59.99625 * 7 6 5 34 34 H 0.97004 * 119.99990 * 179.97438 * 11 10 8 35 35 H 1.08001 * 119.97088 * 0.02562 * 17 16 2 36 36 H 1.08003 * 119.98798 * 180.25537 * 18 17 16 37 37 H 1.08002 * 120.02283 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6611 0.4200 4.7695 8 6 3.1665 -0.3243 5.9784 9 1 3.4169 -1.3720 5.9018 10 6 3.3103 0.3327 7.1820 11 7 3.0059 1.6087 7.2752 12 14 3.9361 -0.5901 8.6808 13 1 5.2921 -1.1269 8.4010 14 1 3.9992 0.3349 9.8409 15 1 3.0142 -1.7117 8.9922 16 6 2.0323 -0.7104 -1.2304 17 6 2.3664 -2.0502 -1.1667 18 6 2.8225 -2.7041 -2.2954 19 6 2.9555 -2.0150 -3.4893 20 9 3.4060 -2.6534 -4.5915 21 6 2.6263 -0.6722 -3.5530 22 6 2.1649 -0.0194 -2.4228 23 9 1.8427 1.2913 -2.4837 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.4495 -1.4979 1.4100 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6163 2.5525 30 1 1.9202 -1.3567 3.8030 31 1 3.5917 -0.9263 3.3683 32 1 3.3369 1.2441 4.5408 33 1 1.6655 0.8130 4.9752 34 1 3.1067 2.0708 8.1221 35 1 2.2669 -2.5874 -0.2350 36 1 3.0793 -3.7520 -2.2454 37 1 2.7294 -0.1341 -4.4838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131024286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:03 Heat of formation + Delta-G solvation = -101.128418 kcal Electronic energy + Delta-G solvation = -19577.927335 eV Core-core repulsion = 16182.606310 eV Total energy + Delta-G solvation = -3395.321026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.03735 -49.98672 -40.28487 -38.02786 -35.81544 -33.96162 -31.81421 -31.54066 -29.71138 -27.70989 -24.99221 -24.52010 -23.58591 -22.11072 -21.57739 -19.22573 -18.51066 -18.15561 -17.25767 -16.94612 -16.72241 -16.53018 -16.35273 -16.31768 -15.59556 -15.39039 -15.33274 -14.72584 -14.45091 -14.09665 -13.81915 -13.70273 -13.55647 -13.16478 -12.94099 -12.68398 -12.60603 -12.46061 -12.40246 -12.15001 -12.03531 -11.51346 -11.35550 -11.08914 -10.53290 -10.03321 -9.64217 -9.38373 -8.18661 -6.29649 -0.05354 0.05354 1.41446 1.44519 1.52349 2.37665 2.42392 2.86192 3.06042 3.14683 3.42378 3.64028 3.70657 3.94515 4.10252 4.15125 4.27763 4.32646 4.44413 4.59321 4.73872 4.79697 4.82638 4.92252 4.96283 5.02388 5.09900 5.15314 5.18519 5.27983 5.31428 5.54541 5.77903 5.78767 5.88284 6.01255 6.28178 6.47251 6.87911 7.39754 8.93077 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.032171 B = 0.003072 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.142181 B = 9111.755556 C = 9620.179916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 H 0.077 0.923 4 N -0.678 5.678 5 C 0.073 3.927 6 C -0.091 4.091 7 C 0.024 3.976 8 C -0.543 4.543 9 H 0.061 0.939 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.265 1.265 16 C -0.115 4.115 17 C -0.041 4.041 18 C -0.155 4.155 19 C 0.112 3.888 20 F -0.138 7.138 21 C -0.193 4.193 22 C 0.114 3.886 23 F -0.139 7.139 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.351 0.649 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.053 0.947 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.263 0.737 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -7.858 -22.005 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 H 0.095 0.905 4 N -0.310 5.310 5 C -0.056 4.056 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.200 4.200 11 N -0.576 5.576 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.190 1.190 16 C -0.117 4.117 17 C -0.059 4.059 18 C -0.174 4.174 19 C 0.093 3.907 20 F -0.116 7.116 21 C -0.212 4.212 22 C 0.094 3.906 23 F -0.117 7.117 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.171 0.829 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.007 0.993 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.243 -7.605 -22.092 23.588 hybrid contribution -0.550 0.470 0.862 1.126 sum -3.793 -7.135 -21.229 22.715 Atomic orbital electron populations 1.22403 0.94542 1.03390 1.02689 1.20266 0.93924 0.96903 0.87620 0.90519 1.60530 1.57321 1.09966 1.03142 1.21842 0.98899 0.95083 0.89744 1.21360 1.00456 0.98059 0.93048 1.18972 0.94769 0.94527 0.93065 1.21698 1.43701 0.96976 0.95729 0.92034 1.25998 0.95718 0.95757 1.02503 1.70093 1.49925 1.10758 1.26775 0.85505 0.79257 0.78365 0.77959 1.19185 1.20990 1.19008 1.20019 1.02661 0.95625 0.93371 1.20930 0.93823 0.92331 0.98804 1.21496 1.02550 1.02559 0.90808 1.17429 0.99319 0.90223 0.83740 1.91516 1.86641 1.81651 1.51831 1.21076 1.05670 0.94546 0.99925 1.17249 1.00863 0.78261 0.94178 1.91498 1.90354 1.32909 1.96977 0.91556 0.90704 0.92261 0.82949 0.92441 0.95300 0.92590 0.92777 0.99307 0.99064 0.92820 0.82217 0.81831 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.14 71.98 0.66 -2.64 16 2 C 0.12 2.76 2.57 44.17 0.11 2.88 16 3 H 0.08 1.97 7.45 -2.39 -0.02 1.95 16 4 N -0.68 -16.91 5.24 -495.45 -2.60 -19.51 16 5 C 0.07 2.37 5.48 86.30 0.47 2.84 16 6 C -0.09 -3.61 5.41 30.59 0.17 -3.45 16 7 C 0.02 1.27 4.97 29.85 0.15 1.42 16 8 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 10 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 11 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 12 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 16 C -0.12 -2.38 5.07 -19.82 -0.10 -2.48 16 17 C -0.04 -0.71 9.32 22.26 0.21 -0.50 16 18 C -0.16 -2.45 10.02 22.32 0.22 -2.23 16 19 C 0.11 2.01 7.30 22.37 0.16 2.18 16 20 F -0.14 -2.58 17.27 44.97 0.78 -1.80 16 21 C -0.19 -3.55 10.01 22.36 0.22 -3.32 16 22 C 0.11 2.40 7.24 22.37 0.16 2.57 16 23 F -0.14 -3.20 16.57 44.97 0.74 -2.45 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.06 1.23 7.45 -2.38 -0.02 1.21 16 27 H 0.35 7.48 7.90 -89.69 -0.71 6.77 16 28 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 29 H 0.03 0.93 7.44 -2.39 -0.02 0.91 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.16 2.41 6.88 -2.91 -0.02 2.39 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -63.83 320.51 4.73 -59.09 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.36 Total: 8.48 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.13 Total: -33.04 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.31 Total: -76.46 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 1.52 Total: -4.26 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.83 4.73 -59.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131024286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.034 kcal (2) G-P(sol) polarization free energy of solvation -63.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds