Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46757 * 60.00769 * 12 10 8 14 14 H 1.48495 * 109.46824 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47105 * 300.00477 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 C 1.38214 * 119.97222 * 279.72769 * 16 2 1 18 18 C 1.38477 * 120.02289 * 179.72664 * 17 16 2 19 19 F 1.35090 * 120.01384 * 180.29411 * 18 17 16 20 20 C 1.38419 * 119.97147 * 0.54773 * 18 17 16 21 21 C 1.38417 * 119.95473 * 359.72793 * 20 18 17 22 22 F 1.35099 * 120.01758 * 180.02562 * 21 20 18 23 23 C 1.38207 * 119.97714 * 100.00270 * 16 2 1 24 24 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 31 31 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 32 32 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 33 33 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 34 34 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 35 35 H 1.07993 * 119.99011 * 359.97438 * 17 16 2 36 36 H 1.08006 * 120.02246 * 179.74583 * 20 18 17 37 37 H 1.08001 * 119.98692 * 359.97438 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 5.2955 -1.1255 8.3991 14 1 4.0036 0.3365 9.8397 15 1 3.0181 -1.7105 8.9924 16 6 2.0323 -0.7104 -1.2304 17 6 2.0717 -2.0916 -1.2625 18 6 2.5277 -2.7456 -2.3947 19 9 2.5606 -4.0957 -2.4281 20 6 2.9549 -2.0154 -3.4903 21 6 2.9203 -0.6321 -3.4549 22 9 3.3364 0.0819 -4.5237 23 6 2.4585 0.0197 -2.3237 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6164 2.5525 30 1 1.9201 -1.3565 3.8030 31 1 3.5917 -0.9261 3.3683 32 1 3.3384 1.2440 4.5400 33 1 1.6669 0.8143 4.9752 34 1 3.1104 2.0722 8.1210 35 1 1.7430 -2.6611 -0.4058 36 1 3.3146 -2.5246 -4.3722 37 1 2.4310 1.0990 -2.2960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178645924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -86.794489 kcal Electronic energy + Delta-G solvation = -19436.945901 eV Core-core repulsion = 16042.246442 eV Total energy + Delta-G solvation = -3394.699460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.29745 -49.23473 -39.68277 -36.75816 -34.05159 -32.34188 -30.69753 -30.35648 -29.06829 -26.11961 -24.15310 -23.22439 -22.32146 -20.76843 -20.15704 -18.01071 -17.44546 -16.67612 -16.31532 -16.25505 -16.02283 -15.61346 -15.56288 -14.67068 -14.60431 -14.49117 -14.21296 -13.70368 -12.98352 -12.83375 -12.38093 -12.25266 -12.18091 -12.12956 -11.90323 -11.57051 -11.37450 -11.05056 -10.79930 -10.57809 -10.53641 -9.71599 -9.39925 -9.22982 -9.06206 -9.04051 -8.34970 -8.32342 -5.99672 -4.01898 0.64492 0.68013 3.03677 3.33999 3.38154 3.40872 3.51516 3.95923 4.16050 4.37357 4.48142 4.51325 4.64317 4.86923 5.07653 5.23016 5.36153 5.37989 5.49336 5.62810 5.66232 5.72342 5.74402 5.84016 5.87498 6.03071 6.17965 6.30721 6.47057 6.67890 6.72521 7.11126 7.23040 7.50099 7.67616 7.82290 8.00411 8.43532 9.05108 9.62172 11.11719 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.003039 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.291407 B = 9210.477314 C = 9591.445611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.120 3.880 3 H 0.058 0.942 4 N -0.684 5.684 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.023 3.977 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C -0.027 4.027 17 C -0.144 4.144 18 C 0.130 3.870 19 F -0.131 7.131 20 C -0.197 4.197 21 C 0.128 3.872 22 F -0.133 7.133 23 C -0.159 4.159 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.341 0.659 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 -4.391 -22.283 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 H 0.076 0.924 4 N -0.316 5.316 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.027 4.027 17 C -0.163 4.163 18 C 0.110 3.890 19 F -0.109 7.109 20 C -0.217 4.217 21 C 0.109 3.891 22 F -0.111 7.111 23 C -0.179 4.179 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.318 -4.505 -22.021 22.720 hybrid contribution 1.278 0.005 0.371 1.331 sum -2.040 -4.500 -21.649 22.206 Atomic orbital electron populations 1.21798 0.93004 1.02862 1.01743 1.20524 0.96582 0.95480 0.86384 0.92381 1.60740 1.33475 1.33817 1.03579 1.22211 1.00742 0.93654 0.90358 1.21626 0.99331 0.99511 0.94046 1.19056 0.97118 0.94194 0.91139 1.21221 1.43656 0.96379 0.94597 0.92711 1.25027 0.95614 0.94880 0.98960 1.69952 1.48855 1.08988 1.25835 0.86655 0.79448 0.79617 0.82270 1.20257 1.21316 1.20203 1.19723 0.95096 0.92771 0.95153 1.21210 1.02109 0.94797 0.98193 1.17301 0.99947 0.77131 0.94595 1.91540 1.94080 1.28504 1.96790 1.21015 1.07132 0.92979 1.00569 1.17201 0.98740 0.88643 0.84521 1.91532 1.87720 1.77992 1.53877 1.21117 1.02763 1.01487 0.92489 0.92608 0.91670 0.91577 0.84092 0.95514 0.91171 0.92457 0.93629 0.96822 0.96567 0.92966 0.82789 0.83614 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.39 37.16 0.35 -1.04 16 2 C 0.12 1.30 2.82 -68.86 -0.19 1.11 16 3 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 4 N -0.68 -8.99 5.69 -107.95 -0.61 -9.61 16 5 C 0.06 0.95 5.48 -3.82 -0.02 0.92 16 6 C -0.11 -2.15 5.41 -26.73 -0.14 -2.29 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 12 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C -0.03 -0.27 4.71 -104.64 -0.49 -0.76 16 17 C -0.14 -1.46 8.98 -39.50 -0.35 -1.81 16 18 C 0.13 1.30 7.30 -39.43 -0.29 1.02 16 19 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 20 C -0.20 -1.82 10.01 -39.45 -0.39 -2.22 16 21 C 0.13 1.23 7.30 -39.43 -0.29 0.95 16 22 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 23 C -0.16 -1.48 9.65 -39.51 -0.38 -1.86 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 27 H 0.34 4.32 7.98 -39.29 -0.31 4.01 16 28 H 0.03 0.43 8.06 -51.93 -0.42 0.02 16 29 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.15 1.57 7.70 -52.49 -0.40 1.17 16 36 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.14 1.12 8.04 -52.49 -0.42 0.69 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -29.48 322.25 -7.95 -37.43 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.23 Total: -1.35 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.76 Total: -19.10 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.12 Total: -35.84 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.48 -7.95 -37.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds