Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46757 * 60.00769 * 12 10 8 14 14 H 1.48495 * 109.46824 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47105 * 300.00477 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 C 1.38214 * 119.97222 * 279.72769 * 16 2 1 18 18 C 1.38477 * 120.02289 * 179.72664 * 17 16 2 19 19 F 1.35090 * 120.01384 * 180.29411 * 18 17 16 20 20 C 1.38419 * 119.97147 * 0.54773 * 18 17 16 21 21 C 1.38417 * 119.95473 * 359.72793 * 20 18 17 22 22 F 1.35099 * 120.01758 * 180.02562 * 21 20 18 23 23 C 1.38207 * 119.97714 * 100.00270 * 16 2 1 24 24 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 31 31 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 32 32 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 33 33 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 34 34 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 35 35 H 1.07993 * 119.99011 * 359.97438 * 17 16 2 36 36 H 1.08006 * 120.02246 * 179.74583 * 20 18 17 37 37 H 1.08001 * 119.98692 * 359.97438 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 5.2955 -1.1255 8.3991 14 1 4.0036 0.3365 9.8397 15 1 3.0181 -1.7105 8.9924 16 6 2.0323 -0.7104 -1.2304 17 6 2.0717 -2.0916 -1.2625 18 6 2.5277 -2.7456 -2.3947 19 9 2.5606 -4.0957 -2.4281 20 6 2.9549 -2.0154 -3.4903 21 6 2.9203 -0.6321 -3.4549 22 9 3.3364 0.0819 -4.5237 23 6 2.4585 0.0197 -2.3237 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 2.9173 -1.1205 1.0288 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6164 2.5525 30 1 1.9201 -1.3565 3.8030 31 1 3.5917 -0.9261 3.3683 32 1 3.3384 1.2440 4.5400 33 1 1.6669 0.8143 4.9752 34 1 3.1104 2.0722 8.1210 35 1 1.7430 -2.6611 -0.4058 36 1 3.3146 -2.5246 -4.3722 37 1 2.4310 1.0990 -2.2960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178645924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -102.656692 kcal Electronic energy + Delta-G solvation = -19437.633738 eV Core-core repulsion = 16042.246442 eV Total energy + Delta-G solvation = -3395.387296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.05565 -50.02890 -40.49318 -37.86508 -35.77767 -33.99069 -31.81266 -31.32300 -30.09433 -27.81609 -25.26633 -24.20160 -23.64480 -21.94540 -21.54635 -18.86813 -18.45873 -18.20684 -17.39670 -17.03616 -16.92699 -16.67407 -16.51748 -16.34719 -15.71491 -15.46440 -15.33151 -14.93297 -14.37526 -13.79981 -13.74568 -13.57186 -13.42853 -12.99004 -12.96559 -12.80595 -12.73277 -12.49126 -12.39843 -12.18298 -11.95179 -11.47656 -11.35742 -11.09620 -10.53489 -10.00191 -9.80313 -9.42177 -8.19082 -6.29863 -0.10591 -0.07771 1.40961 1.43858 1.51750 2.27626 2.41951 2.74681 3.06206 3.14131 3.37951 3.47583 3.78874 3.92832 4.10761 4.22219 4.26956 4.33149 4.52318 4.58175 4.74321 4.74664 4.83875 4.94038 4.96106 4.98887 5.05816 5.12113 5.25716 5.29135 5.39183 5.54227 5.71654 5.77824 5.88051 6.04978 6.28530 6.43300 6.87335 7.39369 8.92526 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.003039 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.291407 B = 9210.477314 C = 9591.445611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.122 3.878 3 H 0.064 0.936 4 N -0.683 5.683 5 C 0.073 3.927 6 C -0.093 4.093 7 C 0.025 3.975 8 C -0.545 4.545 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.267 1.267 16 C -0.029 4.029 17 C -0.145 4.145 18 C 0.120 3.880 19 F -0.137 7.137 20 C -0.191 4.191 21 C 0.122 3.878 22 F -0.135 7.135 23 C -0.153 4.153 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.345 0.655 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.049 0.951 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.264 0.736 35 H 0.151 0.849 36 H 0.162 0.838 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 -5.118 -23.048 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.082 0.918 4 N -0.315 5.315 5 C -0.056 4.056 6 C -0.131 4.131 7 C -0.012 4.012 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.030 4.030 17 C -0.164 4.164 18 C 0.101 3.899 19 F -0.115 7.115 20 C -0.210 4.210 21 C 0.103 3.897 22 F -0.114 7.114 23 C -0.172 4.172 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.015 -5.245 -22.807 23.595 hybrid contribution 1.172 0.247 0.552 1.319 sum -1.843 -4.998 -22.255 22.884 Atomic orbital electron populations 1.21792 0.92484 1.02796 1.02167 1.20533 0.96938 0.95597 0.85642 0.91819 1.60645 1.33810 1.33282 1.03773 1.21885 1.00242 0.93437 0.90031 1.21372 0.99741 0.98331 0.93668 1.18964 0.94882 0.94440 0.92949 1.21698 1.43782 0.96875 0.95898 0.92284 1.25974 0.95706 0.95765 1.02393 1.70083 1.49862 1.10651 1.26798 0.85523 0.79219 0.78381 0.78073 1.19188 1.20839 1.19200 1.19556 0.95867 0.92587 0.95010 1.21211 1.02028 0.94941 0.98189 1.17347 1.00660 0.76950 0.94943 1.91525 1.94217 1.28947 1.96838 1.21174 1.06115 0.92962 1.00784 1.17247 0.99101 0.88774 0.84596 1.91530 1.87798 1.78045 1.53993 1.21254 1.01687 1.02307 0.91963 0.90760 0.91985 0.92587 0.83635 0.95560 0.91458 0.92794 0.93244 0.99064 0.98927 0.92778 0.83130 0.82037 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.39 71.98 0.68 -1.87 16 2 C 0.12 2.45 2.82 44.17 0.12 2.58 16 3 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 4 N -0.68 -17.14 5.69 -495.43 -2.82 -19.95 16 5 C 0.07 2.32 5.48 86.30 0.47 2.79 16 6 C -0.09 -3.73 5.41 30.59 0.17 -3.57 16 7 C 0.03 1.32 4.97 29.85 0.15 1.47 16 8 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 9 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 10 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 11 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 12 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C -0.03 -0.53 4.71 -19.88 -0.09 -0.63 16 17 C -0.14 -2.72 8.98 22.32 0.20 -2.52 16 18 C 0.12 2.25 7.30 22.37 0.16 2.41 16 19 F -0.14 -2.80 17.27 44.97 0.78 -2.02 16 20 C -0.19 -3.17 10.01 22.36 0.22 -2.95 16 21 C 0.12 2.10 7.30 22.37 0.16 2.27 16 22 F -0.14 -2.46 17.27 44.97 0.78 -1.68 16 23 C -0.15 -2.51 9.65 22.32 0.22 -2.29 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.17 7.45 -2.38 -0.02 1.16 16 27 H 0.34 8.27 7.98 -89.69 -0.72 7.56 16 28 H 0.03 0.84 8.06 -2.39 -0.02 0.82 16 29 H 0.07 2.19 7.44 -2.39 -0.02 2.17 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.15 2.92 7.70 -2.91 -0.02 2.90 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.16 2.06 8.04 -2.91 -0.02 2.04 16 Total: -1.00 -62.59 322.25 4.56 -58.03 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.35 Total: 8.70 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.16 Total: -32.79 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.53 Total: -76.59 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 1.55 Total: -3.70 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.59 4.56 -58.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178645924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.625 kcal (2) G-P(sol) polarization free energy of solvation -62.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds