Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47317 * 2 1 4 4 O 1.21272 * 119.99836 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99593 * 179.97438 * 3 2 1 6 6 C 1.47018 * 125.65214 * 359.97438 * 5 3 2 7 7 C 1.54325 * 107.40412 * 181.01647 * 6 5 3 8 8 C 1.55552 * 102.75696 * 22.23822 * 7 6 5 9 9 H 1.09000 * 111.02984 * 82.56372 * 8 7 6 10 10 C 1.50704 * 110.99971 * 206.38998 * 8 7 6 11 11 O 1.20817 * 120.00086 * 112.21181 * 10 8 7 12 12 O 1.34234 * 119.99527 * 292.21335 * 10 8 7 13 13 C 1.45202 * 116.99849 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.46912 * 179.97438 * 13 12 10 15 15 C 1.50711 * 109.46962 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99882 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00134 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99975 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00249 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46901 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47591 * 119.99907 * 19 17 15 22 22 H 1.48504 * 109.46994 * 240.00237 * 19 17 15 23 23 C 1.47430 * 125.64252 * 180.02562 * 5 3 2 24 24 H 1.09002 * 109.47102 * 59.99927 * 1 2 3 25 25 H 1.09000 * 109.47516 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 300.00371 * 1 2 3 27 27 H 1.09002 * 109.47060 * 239.99629 * 2 1 3 28 28 H 1.09002 * 109.47102 * 120.00073 * 2 1 3 29 29 H 1.09002 * 109.88241 * 300.51175 * 6 5 3 30 30 H 1.09000 * 109.88049 * 61.52304 * 6 5 3 31 31 H 1.08993 * 110.72531 * 140.63023 * 7 6 5 32 32 H 1.09000 * 110.72094 * 263.91129 * 7 6 5 33 33 H 1.08994 * 109.47231 * 300.00240 * 13 12 10 34 34 H 1.09001 * 109.46740 * 60.00037 * 13 12 10 35 35 H 1.09000 * 109.47495 * 299.99785 * 14 13 12 36 36 H 1.09001 * 109.47264 * 60.00509 * 14 13 12 37 37 H 0.96997 * 119.99785 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.36526 * 274.67677 * 23 5 3 39 39 H 1.08992 * 110.36633 * 36.89142 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4182 0.6489 0.0017 7 6 5.7707 1.3915 0.0280 8 6 5.3885 2.7807 0.6144 9 1 5.3386 2.7456 1.7026 10 6 6.3519 3.8445 0.1548 11 8 5.9783 4.7144 -0.5958 12 8 7.6252 3.8255 0.5794 13 6 8.4972 4.8809 0.0956 14 6 9.8975 4.6948 0.6832 15 6 10.8025 5.7906 0.1816 16 1 10.4172 6.5446 -0.4888 17 6 12.1222 5.8306 0.5786 18 7 12.5913 4.9127 1.3954 19 14 13.2437 7.1892 -0.0425 20 1 12.4788 8.0900 -0.9419 21 1 13.7653 7.9664 1.1103 22 1 14.3787 6.5910 -0.7904 23 6 3.9833 3.0018 0.0011 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.3248 0.0173 0.8851 30 1 4.3476 0.0391 -0.8990 31 1 6.4798 0.8785 0.6776 32 1 6.1737 1.4947 -0.9795 33 1 8.5506 4.8381 -0.9922 34 1 8.1007 5.8488 0.4022 35 1 9.8439 4.7379 1.7710 36 1 10.2944 3.7268 0.3770 37 1 13.5197 4.9411 1.6749 38 1 4.0693 3.3809 -1.0172 39 1 3.4043 3.6920 0.6145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179029795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = -139.524719 kcal Electronic energy + Delta-G solvation = -20093.469986 eV Core-core repulsion = 16807.571488 eV Total energy + Delta-G solvation = -3285.898499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71338 -39.75235 -37.62447 -36.12200 -33.41286 -33.22567 -32.03267 -30.28871 -29.48410 -26.12249 -24.91474 -23.19261 -22.69745 -20.99620 -20.10130 -19.45131 -17.80595 -17.53236 -16.71099 -16.13118 -15.98600 -15.64663 -15.49027 -14.80697 -14.46808 -14.06715 -13.84147 -13.30134 -13.20473 -12.91583 -12.62465 -12.48913 -12.40396 -12.15899 -11.95768 -11.59195 -11.51246 -11.28901 -11.18523 -11.06127 -10.81551 -10.70970 -10.26157 -10.09840 -9.71362 -9.66989 -9.32490 -8.94174 -8.48597 -6.14474 -4.18844 2.37733 2.40923 2.53748 3.15719 3.25034 3.32880 3.38081 3.98895 4.17583 4.36200 4.42655 4.61070 4.72911 4.77882 4.89772 4.95364 5.08817 5.22090 5.22400 5.26844 5.45505 5.48717 5.58091 5.65259 5.68108 5.77852 5.88862 5.97404 6.03027 6.03799 6.57940 6.89760 7.20010 7.50714 7.56934 7.81966 7.89798 8.09528 8.20213 8.86938 9.45962 10.97042 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.062743 B = 0.002802 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.156191 B = 9990.767665 C =10290.260692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.527 3.473 4 O -0.539 6.539 5 N -0.623 5.623 6 C 0.100 3.900 7 C -0.118 4.118 8 C -0.100 4.100 9 H 0.121 0.879 10 C 0.467 3.533 11 O -0.512 6.512 12 O -0.353 6.353 13 C 0.075 3.925 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.121 3.879 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 -13.539 -1.271 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.415 6.415 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.156 4.156 8 C -0.120 4.120 9 H 0.139 0.861 10 C 0.309 3.691 11 O -0.402 6.402 12 O -0.269 6.269 13 C 0.002 3.998 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.001 4.001 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.515 -12.840 -1.408 22.576 hybrid contribution 0.918 0.810 -0.323 1.266 sum -17.597 -12.031 -1.731 21.387 Atomic orbital electron populations 1.21547 0.92926 1.01628 1.03451 1.21620 0.98566 0.93342 1.04355 1.20502 0.80085 0.92062 0.75757 1.90722 1.54236 1.46802 1.49784 1.48553 1.05351 1.07978 1.73913 1.22112 0.86393 0.91338 1.02419 1.22710 0.96609 0.93086 1.03219 1.22173 0.92798 0.93815 1.03213 0.86082 1.22946 0.83009 0.84864 0.78259 1.90656 1.78414 1.37051 1.34039 1.86521 1.20258 1.53092 1.67019 1.23687 0.90506 0.86788 0.98806 1.19178 0.86382 0.98424 0.97275 1.21016 0.94771 1.11284 1.29372 0.92193 1.24985 0.98068 0.96225 0.94901 1.69981 1.15420 1.33982 1.33457 0.86415 0.80481 0.81694 0.78728 1.19579 1.20803 1.20812 1.22047 0.90474 0.84912 1.02665 0.91952 0.91982 0.91930 0.88901 0.88849 0.90591 0.90673 0.87980 0.89608 0.92224 0.92212 0.95330 0.95324 0.92739 0.89648 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.14 -0.95 5.61 -27.88 -0.16 -1.10 16 3 C 0.53 5.84 7.85 -10.98 -0.09 5.76 16 4 O -0.54 -8.23 16.24 5.56 0.09 -8.14 16 5 N -0.62 -6.34 3.33 -170.53 -0.57 -6.91 16 6 C 0.10 0.69 6.47 -3.07 -0.02 0.67 16 7 C -0.12 -1.02 6.44 -24.68 -0.16 -1.18 16 8 C -0.10 -1.14 3.55 -89.41 -0.32 -1.46 16 9 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 10 C 0.47 7.62 7.28 36.01 0.26 7.88 16 11 O -0.51 -9.77 15.47 -18.74 -0.29 -10.06 16 12 O -0.35 -6.64 10.22 -39.27 -0.40 -7.04 16 13 C 0.07 1.61 5.40 37.16 0.20 1.81 16 14 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 15 C -0.53 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.12 1.47 6.03 -2.53 -0.02 1.45 16 24 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.79 8.04 -51.93 -0.42 0.38 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 34 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 39 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -33.35 332.43 -7.20 -40.56 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -6.25 Total: -4.66 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.51 Total: 0.34 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.17 Total: -32.17 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.60 Total: -25.24 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.35 -7.20 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179029795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.967 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds